Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|7220
Gene name
LocationContig_816:7340..7676
Strand+
Gene length (bp)336
Transcript length (bp)336
Coding sequence length (bp)336
Protein length (aa) 112

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.0E-06 3 46

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003676 nucleic acid binding No
GO:0097159 organic cyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 49 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|7220
MSAIDVPVDHHRGRIRGQGYVTFADADAAASAAELLDQKPLMGRLVHARLMGSTNKGKRKMVDKSDKGLPIQDKA
NTAKPLMASPPACEPTQQPEKYPRPVIVNGSNFRLK*
Coding >OphauG2|7220
ATGAGCGCCATTGATGTACCTGTAGATCATCACAGGGGCCGTATCCGTGGCCAGGGCTATGTGACCTTTGCTGAC
GCAGATGCGGCGGCATCGGCCGCTGAGCTTCTTGACCAGAAGCCATTAATGGGACGGCTTGTGCACGCACGTCTC
ATGGGTAGTACAAACAAGGGGAAAAGGAAAATGGTTGACAAGTCGGATAAGGGGTTGCCGATCCAAGACAAGGCA
AACACGGCAAAGCCGCTCATGGCGTCGCCGCCGGCGTGTGAGCCCACGCAGCAGCCCGAAAAGTACCCACGGCCC
GTCATTGTGAATGGCTCAAACTTTCGGCTCAAGTAA
Transcript >OphauG2|7220
ATGAGCGCCATTGATGTACCTGTAGATCATCACAGGGGCCGTATCCGTGGCCAGGGCTATGTGACCTTTGCTGAC
GCAGATGCGGCGGCATCGGCCGCTGAGCTTCTTGACCAGAAGCCATTAATGGGACGGCTTGTGCACGCACGTCTC
ATGGGTAGTACAAACAAGGGGAAAAGGAAAATGGTTGACAAGTCGGATAAGGGGTTGCCGATCCAAGACAAGGCA
AACACGGCAAAGCCGCTCATGGCGTCGCCGCCGGCGTGTGAGCCCACGCAGCAGCCCGAAAAGTACCCACGGCCC
GTCATTGTGAATGGCTCAAACTTTCGGCTCAAGTAA
Gene >OphauG2|7220
ATGAGCGCCATTGATGTACCTGTAGATCATCACAGGGGCCGTATCCGTGGCCAGGGCTATGTGACCTTTGCTGAC
GCAGATGCGGCGGCATCGGCCGCTGAGCTTCTTGACCAGAAGCCATTAATGGGACGGCTTGTGCACGCACGTCTC
ATGGGTAGTACAAACAAGGGGAAAAGGAAAATGGTTGACAAGTCGGATAAGGGGTTGCCGATCCAAGACAAGGCA
AACACGGCAAAGCCGCTCATGGCGTCGCCGCCGGCGTGTGAGCCCACGCAGCAGCCCGAAAAGTACCCACGGCCC
GTCATTGTGAATGGCTCAAACTTTCGGCTCAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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