Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|7197
Gene name
Location	Contig_81:21551..22731
Strand	+
Gene length (bp)	1180
Transcript length (bp)	939
Coding sequence length (bp)	939
Protein length (aa)	313

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04193	PQ-loop	PQ loop repeat	4.4E-12	22	77
PF04193	PQ-loop	PQ loop repeat	3.9E-19	216	270

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P38279\|YPQ3_YEAST	Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1	23	309	4.0E-44
sp\|Q12010\|YPQ1_YEAST	Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1	34	306	3.0E-39
sp\|Q10482\|STM1_SCHPO	Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1	23	304	1.0E-30
sp\|Q95XZ6\|LAAT1_CAEEL	Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2	21	311	1.0E-29
sp\|Q06328\|YPQ2_YEAST	Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1	31	306	1.0E-23

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P38279\|YPQ3_YEAST	Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1	23	309	4.0E-44
sp\|Q12010\|YPQ1_YEAST	Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1	34	306	3.0E-39
sp\|Q10482\|STM1_SCHPO	Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1	23	304	1.0E-30
sp\|Q95XZ6\|LAAT1_CAEEL	Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2	21	311	1.0E-29
sp\|Q06328\|YPQ2_YEAST	Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1	31	306	1.0E-23
sp\|Q5ZJX0\|LAAT1_CHICK	Lysosomal amino acid transporter 1 homolog OS=Gallus gallus GN=PQLC2 PE=2 SV=1	211	301	3.0E-17
sp\|Q6ZP29\|LAAT1_HUMAN	Lysosomal amino acid transporter 1 homolog OS=Homo sapiens GN=PQLC2 PE=1 SV=1	211	312	2.0E-10
sp\|B0BMY1\|LAAT1_RAT	Lysosomal amino acid transporter 1 homolog OS=Rattus norvegicus GN=Pqlc2 PE=1 SV=1	211	311	9.0E-10
sp\|Q8C4N4\|LAAT1_MOUSE	Lysosomal amino acid transporter 1 homolog OS=Mus musculus GN=Pqlc2 PE=2 SV=1	211	311	8.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 20	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	51	73	22
2	78	100	22
3	162	184	22
4	209	228	19
5	245	267	22
6	277	296	19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|7197 MASTIFMTTLAAAASPLPAGEILSGIFGSISMTAWLPQLVANYRAKNAEALSVLFLIVWFLGDVSNFIGALLTSL APSAIALAGYFCFLDIALIGQTFYYNSINATSSRRPADDSLVSESSPLIRNTSVPSASHLGSSADEDPPTEPDTK TLSDHVDTPVHVGWLRNCLNLLAIYVVGFVAWYVSYKAGLWNGSAPGIPDSPKGDYKRIGEIVGLCLGYISATFY LCARVPQIVKNYKAKSCEGLSLLFFMLSTTGNLTYGLSLAAYSQERQYLLKAFPWLLGSLGTIIEDLIIFVQFRL YANRARHPISEP*
Coding	>OphauG2\|7197 ATGGCCTCTACAATCTTCATGACAACTTTGGCTGCTGCAGCCTCGCCGCTGCCTGCCGGAGAAATTCTTTCGGGC ATATTTGGGAGTATTAGCATGACGGCTTGGCTTCCTCAGCTCGTTGCAAACTACAGAGCAAAGAATGCCGAGGCC CTCAGCGTCCTGTTTCTCATTGTGTGGTTCCTTGGTGATGTCTCTAATTTCATCGGCGCCCTGCTTACCAGTTTG GCACCAAGCGCCATTGCCTTGGCGGGCTACTTCTGCTTCCTGGATATCGCTCTCATCGGCCAGACCTTTTACTAC AATTCCATCAATGCCACCAGTTCACGTCGGCCCGCCGACGATTCACTAGTGTCCGAATCTTCACCGCTCATTAGA AACACCTCTGTCCCGTCCGCCTCGCATCTTGGCTCCAGTGCAGACGAGGATCCACCAACAGAGCCAGACACAAAG ACGCTTTCAGATCACGTCGATACGCCCGTACATGTCGGATGGCTTCGCAATTGCTTAAACCTGCTGGCCATCTAC GTTGTGGGGTTCGTTGCCTGGTACGTATCGTACAAGGCTGGACTTTGGAACGGCAGCGCTCCAGGAATTCCCGAT TCTCCAAAGGGCGATTATAAGCGCATTGGCGAAATTGTCGGGCTCTGCCTCGGCTATATCAGTGCAACGTTTTAT CTCTGTGCTCGAGTGCCTCAAATTGTCAAGAATTACAAGGCCAAGTCGTGTGAAGGTTTATCGCTTCTCTTCTTC ATGCTCTCTACAACGGGAAACCTGACGTATGGGTTGAGCCTTGCCGCGTACTCACAGGAGAGACAGTACCTCCTC AAGGCCTTTCCTTGGCTTCTTGGGTCACTGGGCACTATTATTGAGGACCTGATTATCTTTGTTCAGTTTCGCCTA TATGCCAACAGGGCCCGTCACCCTATCTCGGAGCCATGA
Transcript	>OphauG2\|7197 ATGGCCTCTACAATCTTCATGACAACTTTGGCTGCTGCAGCCTCGCCGCTGCCTGCCGGAGAAATTCTTTCGGGC ATATTTGGGAGTATTAGCATGACGGCTTGGCTTCCTCAGCTCGTTGCAAACTACAGAGCAAAGAATGCCGAGGCC CTCAGCGTCCTGTTTCTCATTGTGTGGTTCCTTGGTGATGTCTCTAATTTCATCGGCGCCCTGCTTACCAGTTTG GCACCAAGCGCCATTGCCTTGGCGGGCTACTTCTGCTTCCTGGATATCGCTCTCATCGGCCAGACCTTTTACTAC AATTCCATCAATGCCACCAGTTCACGTCGGCCCGCCGACGATTCACTAGTGTCCGAATCTTCACCGCTCATTAGA AACACCTCTGTCCCGTCCGCCTCGCATCTTGGCTCCAGTGCAGACGAGGATCCACCAACAGAGCCAGACACAAAG ACGCTTTCAGATCACGTCGATACGCCCGTACATGTCGGATGGCTTCGCAATTGCTTAAACCTGCTGGCCATCTAC GTTGTGGGGTTCGTTGCCTGGTACGTATCGTACAAGGCTGGACTTTGGAACGGCAGCGCTCCAGGAATTCCCGAT TCTCCAAAGGGCGATTATAAGCGCATTGGCGAAATTGTCGGGCTCTGCCTCGGCTATATCAGTGCAACGTTTTAT CTCTGTGCTCGAGTGCCTCAAATTGTCAAGAATTACAAGGCCAAGTCGTGTGAAGGTTTATCGCTTCTCTTCTTC ATGCTCTCTACAACGGGAAACCTGACGTATGGGTTGAGCCTTGCCGCGTACTCACAGGAGAGACAGTACCTCCTC AAGGCCTTTCCTTGGCTTCTTGGGTCACTGGGCACTATTATTGAGGACCTGATTATCTTTGTTCAGTTTCGCCTA TATGCCAACAGGGCCCGTCACCCTATCTCGGAGCCATGA
Gene	>OphauG2\|7197 ATGGCCTCTACAATCTTCATGACAACTTTGGCTGCTGCAGCCTCGCCGCTGCCTGCCGGAGAAATTCTTTCGGGC ATATTTGGGAGTATTAGCATGACGGCTTGGGTCTGCCTCTTGGTACAGAAAAAACGTGGTGTGGTGGTGATGCCA ATTCATTCGCTGATGCTGCCGCAGCTTCCTCAGCTCGTTGCAAACTACAGAGCAAAGAATGCCGAGGCCCTCAGC GTCCTGTTTCTCATTGTGTGGTTCCTTGGTGATGTCTCTAATTTCATCGGTTCGTTTGGCTACTGGTCTGCGACA CGGCAAGCCCTTGCAGCGAGACTGACATTTCCCCATCAGGCGCCCTGCTTACCAGTTTGGCACCAAGCGCCATTG CCTTGGCGGGCTACTTCTGCTTCCTGGATATCGCTCTCATCGGCCAGACCTTTTACTACAATTCCATCAATGCCA CCAGTTCACGTCGGCCCGCCGACGATTCACTAGTGTCCGAATCTTCACCGCTCATTAGAAACACCTCTGTCCCGT CCGCCTCGCATCTTGGCTCCAGTGCAGACGAGGATCCACCAACAGAGCCAGACACAAAGACGCTTTCAGATCACG TCGATACGCCCGTACATGTCGGATGGCTTCGCAATTGCTTAAACCTGCTGGCCATCTACGTTGTGGGGTTCGTTG CCTGGTACGTATCGTACAAGGCTGGACTTTGGAACGGCAGCGCTCCAGGAATTCCCGATTCTCCAAAGGGCGATT ATAAGCGCATTGGCGAAATTGTCGGGCTCTGCCTCGGCTATATCAGTGCAACGTTTTATCTCTGGTAGGCTGCCC CACAGGCCAAACACCAGTCGATGACGCTGACTTGAGACGCAGTGCTCGAGTGCCTCAAATTGTCAAGAATTACAA GGCCAAGTCGTGTGAAGGTAAGCCATGCATCTTTTCCGGGCTGGCACGATGAATTGTCTGACACACTACAGGTTT ATCGCTTCTCTTCTTCATGCTCTCTACAACGGGAAACCTGACGTATGGGTTGAGCCTTGCCGCGTACTCACAGGA GAGACAGTACCTCCTCAAGGCCTTTCCTTGGCTTCTTGGGTCACTGGGCACTATTATTGAGGACCTGATTATCTT TGTTCAGTTTCGCCTATATGCCAACAGGGCCCGTCACCCTATCTCGGAGCCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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