© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|7149 |
| Gene name | |
| Location | Contig_80:27091..29677 |
| Strand | + |
| Gene length (bp) | 2586 |
| Transcript length (bp) | 2586 |
| Coding sequence length (bp) | 2586 |
| Protein length (aa) | 862 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 9.3E-11 | 793 | 855 |
| PF13639 | zf-RING_2 | Ring finger domain | 5.0E-08 | 828 | 855 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 2.3E-06 | 794 | 854 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 2.6E-04 | 794 | 852 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36096|TUL1_YEAST | Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1 SV=1 | 250 | 861 | 2.0E-45 |
| sp|O43085|DSC1_SCHPO | DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2 | 338 | 861 | 5.0E-39 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0046872 | metal ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 29 | 0.999394 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| 2 | 454 | 476 | 22 |
| 3 | 483 | 505 | 22 |
| 4 | 602 | 624 | 22 |
| 5 | 629 | 648 | 19 |
| 6 | 658 | 680 | 22 |
| 7 | 693 | 715 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1621 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7149 MPQTRNPAAALLLVVFLIWLLLPDGGFQGQSLVLSDVVAVRLARYHEALDVLKTTSWGDFAPPRSPEGEDQGQDD DEDAKFVNLTGFRAQDGFAWQDLDDFRQRGLRLSRYAVDGGQLWDVAQGEAVWANASGTLRGEWIRRQGSVQRSF ESYNLSRNVPEMDWVGHGVEWARNMTGATGRMMLRLEGNSTVMRYEDVEPPAADTDPSASQHLPLSGGAIRNVKA TLTVEDTAGSGLNWEMRLWGVHWPRQGVVLLTTTSEKFDGILGLPHLTPSASFFRSSRRLLEQILARVLDTKSSN ANMDQNMPWNSDVDNPQYTAYPSPHCEFVMYAQVHPPVGLHARGDAKSQQPQDMIAAIEAELQNPLGAPIRSVPR LVMSAVVWSPDCAFFLETKGPPDFAPGPADHLTGMKTEVHTHHVKMWMLVYALLVLGQVRLLKDQVKESLTPSTL GRISFWTISAMVMVDGMTFTAAATWVSSAAATFLPTLALMFASFLSMTIGGSFLHKMHEMQQPVARLGREQNRAS SPRPTSSAPADQTPTTAAILPGPVTATRASGAPQQPPVIVPSDQDQAAEIAQAASAVPRPGSGDANTTPQALSFQ SIVGRFVLASLCLCFLAISSSTWYPRPRSLLLNFCAAAYLSLWVPQIYRNAVRNCRRALAWPFVIGQSVLRLLPI AYFWLNEDNFLYARPDRPAFFLFVAWVWIQIFVLAAQDVLGPRFGLPASWCPEAWDYHPVLREDGLEAGGLPIGL VAAASDEHDADALHKHPSSTSHDGHASSAHVKPPAGCSLRAIDCAICREALQVPVVKAGHDDSAATGVASVFARR LYMVTPCRHVFHTACLEGWIKFRLQCPICRDDLPPI* |
| Coding | >OphauG2|7149 ATGCCGCAGACTCGGAATCCGGCAGCGGCGCTCCTCCTTGTCGTCTTCCTCATCTGGCTGCTTCTGCCCGACGGC GGCTTTCAAGGCCAATCACTGGTCTTGTCAGACGTGGTGGCTGTCCGTCTCGCGCGCTACCACGAGGCTCTCGAC GTGCTCAAGACGACGTCATGGGGCGACTTTGCGCCGCCACGCAGCCCCGAGGGAGAAGACCAAGGCCAGGATGAC GACGAAGACGCAAAGTTTGTCAACCTCACGGGGTTCCGGGCTCAGGACGGGTTCGCATGGCAGGATCTCGACGAC TTTCGGCAACGAGGCCTCCGACTTAGCCGATACGCCGTTGATGGAGGGCAGCTGTGGGATGTGGCGCAGGGAGAG GCCGTGTGGGCAAACGCATCGGGGACTCTGCGGGGAGAGTGGATACGGCGCCAGGGCTCGGTGCAGCGGTCCTTT GAAAGCTACAATCTTAGTCGTAACGTGCCCGAGATGGACTGGGTCGGGCATGGCGTCGAGTGGGCGCGCAATATG ACGGGCGCCACAGGCCGCATGATGCTGCGACTCGAGGGTAACAGCACCGTGATGCGGTATGAGGATGTGGAGCCG CCCGCGGCAGACACGGATCCCAGCGCCAGCCAGCATCTCCCGCTCTCTGGCGGGGCCATCCGCAACGTCAAGGCC ACTCTGACGGTCGAGGACACGGCCGGGTCGGGCCTCAACTGGGAGATGCGGCTGTGGGGGGTGCACTGGCCGCGG CAGGGCGTTGTTCTGCTTACCACGACGAGCGAGAAGTTTGACGGCATCTTGGGCCTGCCGCACCTCACGCCCAGC GCCAGCTTTTTCCGCTCGAGCCGGCGCCTCCTCGAGCAGATACTGGCCCGGGTGCTTGACACCAAAAGCAGCAAC GCCAACATGGACCAGAACATGCCCTGGAACTCCGACGTGGACAATCCGCAGTACACAGCCTATCCTTCGCCCCAC TGCGAGTTTGTCATGTACGCCCAGGTGCACCCTCCGGTCGGCCTGCACGCGCGAGGCGATGCCAAGAGCCAGCAG CCTCAAGACATGATTGCGGCCATTGAGGCGGAGCTGCAGAACCCACTGGGCGCGCCCATCCGCTCGGTGCCGCGT CTCGTCATGTCCGCCGTGGTATGGTCGCCCGACTGCGCCTTTTTCCTCGAGACCAAGGGCCCGCCCGACTTTGCG CCAGGGCCGGCAGACCATCTGACGGGCATGAAGACCGAGGTGCACACGCACCACGTCAAGATGTGGATGCTGGTG TATGCGCTGCTTGTTCTCGGCCAGGTGCGTCTGCTCAAGGACCAGGTCAAGGAGTCGTTGACGCCGTCGACCCTG GGCCGCATCAGCTTCTGGACCATCAGCGCCATGGTCATGGTGGACGGCATGACCTTTACCGCCGCTGCCACTTGG GTCTCGTCGGCCGCCGCCACCTTTTTGCCTACGCTGGCCCTCATGTTTGCTTCCTTCCTCTCCATGACCATTGGC GGCAGCTTTCTGCACAAGATGCACGAGATGCAGCAGCCAGTGGCACGGCTTGGACGCGAGCAGAACCGCGCCTCT TCTCCCCGGCCCACCAGCTCGGCGCCGGCCGACCAGACCCCGACAACCGCCGCCATACTTCCCGGCCCGGTCACG GCCACCCGCGCATCCGGCGCCCCGCAGCAGCCACCCGTCATTGTTCCCTCGGACCAGGACCAAGCCGCAGAAATT GCCCAAGCCGCCTCGGCCGTGCCTCGCCCTGGTTCGGGAGATGCAAACACCACGCCCCAGGCCCTCTCCTTTCAA TCCATTGTTGGCCGCTTCGTCCTGGCCAGTCTCTGTCTCTGCTTCCTGGCCATTTCGTCGTCGACATGGTATCCG CGCCCTCGCTCCCTCTTGCTCAACTTTTGTGCCGCGGCCTACCTGTCTCTTTGGGTCCCCCAGATTTACCGCAAT GCAGTGCGCAACTGTCGCCGCGCTCTGGCATGGCCCTTTGTCATTGGCCAATCTGTGCTGCGCCTACTGCCTATT GCCTACTTTTGGCTCAATGAGGACAATTTTTTATACGCCCGCCCCGACCGTCCGGCGTTCTTCTTGTTTGTGGCC TGGGTCTGGATCCAGATTTTCGTCCTTGCTGCCCAAGACGTGCTTGGCCCGCGCTTTGGTCTGCCTGCTTCGTGG TGTCCCGAAGCCTGGGACTATCACCCGGTCTTGCGCGAGGATGGCCTCGAAGCGGGCGGCTTGCCCATTGGTCTC GTGGCGGCAGCGTCGGACGAGCACGATGCCGACGCTCTGCACAAACATCCCTCTTCCACCTCTCACGACGGCCAC GCTTCCAGTGCGCATGTCAAGCCGCCTGCTGGCTGCTCTCTGCGCGCTATTGACTGCGCAATTTGCAGAGAAGCG CTACAGGTTCCAGTCGTGAAAGCTGGCCACGACGACAGCGCCGCAACCGGTGTTGCTAGCGTCTTTGCTCGCAGG CTCTACATGGTGACGCCATGCCGCCATGTTTTCCACACGGCTTGCCTCGAGGGCTGGATCAAGTTTCGTCTACAA TGCCCCATATGCCGCGACGATTTGCCGCCAATCTAG |
| Transcript | >OphauG2|7149 ATGCCGCAGACTCGGAATCCGGCAGCGGCGCTCCTCCTTGTCGTCTTCCTCATCTGGCTGCTTCTGCCCGACGGC GGCTTTCAAGGCCAATCACTGGTCTTGTCAGACGTGGTGGCTGTCCGTCTCGCGCGCTACCACGAGGCTCTCGAC GTGCTCAAGACGACGTCATGGGGCGACTTTGCGCCGCCACGCAGCCCCGAGGGAGAAGACCAAGGCCAGGATGAC GACGAAGACGCAAAGTTTGTCAACCTCACGGGGTTCCGGGCTCAGGACGGGTTCGCATGGCAGGATCTCGACGAC TTTCGGCAACGAGGCCTCCGACTTAGCCGATACGCCGTTGATGGAGGGCAGCTGTGGGATGTGGCGCAGGGAGAG GCCGTGTGGGCAAACGCATCGGGGACTCTGCGGGGAGAGTGGATACGGCGCCAGGGCTCGGTGCAGCGGTCCTTT GAAAGCTACAATCTTAGTCGTAACGTGCCCGAGATGGACTGGGTCGGGCATGGCGTCGAGTGGGCGCGCAATATG ACGGGCGCCACAGGCCGCATGATGCTGCGACTCGAGGGTAACAGCACCGTGATGCGGTATGAGGATGTGGAGCCG CCCGCGGCAGACACGGATCCCAGCGCCAGCCAGCATCTCCCGCTCTCTGGCGGGGCCATCCGCAACGTCAAGGCC ACTCTGACGGTCGAGGACACGGCCGGGTCGGGCCTCAACTGGGAGATGCGGCTGTGGGGGGTGCACTGGCCGCGG CAGGGCGTTGTTCTGCTTACCACGACGAGCGAGAAGTTTGACGGCATCTTGGGCCTGCCGCACCTCACGCCCAGC GCCAGCTTTTTCCGCTCGAGCCGGCGCCTCCTCGAGCAGATACTGGCCCGGGTGCTTGACACCAAAAGCAGCAAC GCCAACATGGACCAGAACATGCCCTGGAACTCCGACGTGGACAATCCGCAGTACACAGCCTATCCTTCGCCCCAC TGCGAGTTTGTCATGTACGCCCAGGTGCACCCTCCGGTCGGCCTGCACGCGCGAGGCGATGCCAAGAGCCAGCAG CCTCAAGACATGATTGCGGCCATTGAGGCGGAGCTGCAGAACCCACTGGGCGCGCCCATCCGCTCGGTGCCGCGT CTCGTCATGTCCGCCGTGGTATGGTCGCCCGACTGCGCCTTTTTCCTCGAGACCAAGGGCCCGCCCGACTTTGCG CCAGGGCCGGCAGACCATCTGACGGGCATGAAGACCGAGGTGCACACGCACCACGTCAAGATGTGGATGCTGGTG TATGCGCTGCTTGTTCTCGGCCAGGTGCGTCTGCTCAAGGACCAGGTCAAGGAGTCGTTGACGCCGTCGACCCTG GGCCGCATCAGCTTCTGGACCATCAGCGCCATGGTCATGGTGGACGGCATGACCTTTACCGCCGCTGCCACTTGG GTCTCGTCGGCCGCCGCCACCTTTTTGCCTACGCTGGCCCTCATGTTTGCTTCCTTCCTCTCCATGACCATTGGC GGCAGCTTTCTGCACAAGATGCACGAGATGCAGCAGCCAGTGGCACGGCTTGGACGCGAGCAGAACCGCGCCTCT TCTCCCCGGCCCACCAGCTCGGCGCCGGCCGACCAGACCCCGACAACCGCCGCCATACTTCCCGGCCCGGTCACG GCCACCCGCGCATCCGGCGCCCCGCAGCAGCCACCCGTCATTGTTCCCTCGGACCAGGACCAAGCCGCAGAAATT GCCCAAGCCGCCTCGGCCGTGCCTCGCCCTGGTTCGGGAGATGCAAACACCACGCCCCAGGCCCTCTCCTTTCAA TCCATTGTTGGCCGCTTCGTCCTGGCCAGTCTCTGTCTCTGCTTCCTGGCCATTTCGTCGTCGACATGGTATCCG CGCCCTCGCTCCCTCTTGCTCAACTTTTGTGCCGCGGCCTACCTGTCTCTTTGGGTCCCCCAGATTTACCGCAAT GCAGTGCGCAACTGTCGCCGCGCTCTGGCATGGCCCTTTGTCATTGGCCAATCTGTGCTGCGCCTACTGCCTATT GCCTACTTTTGGCTCAATGAGGACAATTTTTTATACGCCCGCCCCGACCGTCCGGCGTTCTTCTTGTTTGTGGCC TGGGTCTGGATCCAGATTTTCGTCCTTGCTGCCCAAGACGTGCTTGGCCCGCGCTTTGGTCTGCCTGCTTCGTGG TGTCCCGAAGCCTGGGACTATCACCCGGTCTTGCGCGAGGATGGCCTCGAAGCGGGCGGCTTGCCCATTGGTCTC GTGGCGGCAGCGTCGGACGAGCACGATGCCGACGCTCTGCACAAACATCCCTCTTCCACCTCTCACGACGGCCAC GCTTCCAGTGCGCATGTCAAGCCGCCTGCTGGCTGCTCTCTGCGCGCTATTGACTGCGCAATTTGCAGAGAAGCG CTACAGGTTCCAGTCGTGAAAGCTGGCCACGACGACAGCGCCGCAACCGGTGTTGCTAGCGTCTTTGCTCGCAGG CTCTACATGGTGACGCCATGCCGCCATGTTTTCCACACGGCTTGCCTCGAGGGCTGGATCAAGTTTCGTCTACAA TGCCCCATATGCCGCGACGATTTGCCGCCAATCTAG |
| Gene | >OphauG2|7149 ATGCCGCAGACTCGGAATCCGGCAGCGGCGCTCCTCCTTGTCGTCTTCCTCATCTGGCTGCTTCTGCCCGACGGC GGCTTTCAAGGCCAATCACTGGTCTTGTCAGACGTGGTGGCTGTCCGTCTCGCGCGCTACCACGAGGCTCTCGAC GTGCTCAAGACGACGTCATGGGGCGACTTTGCGCCGCCACGCAGCCCCGAGGGAGAAGACCAAGGCCAGGATGAC GACGAAGACGCAAAGTTTGTCAACCTCACGGGGTTCCGGGCTCAGGACGGGTTCGCATGGCAGGATCTCGACGAC TTTCGGCAACGAGGCCTCCGACTTAGCCGATACGCCGTTGATGGAGGGCAGCTGTGGGATGTGGCGCAGGGAGAG GCCGTGTGGGCAAACGCATCGGGGACTCTGCGGGGAGAGTGGATACGGCGCCAGGGCTCGGTGCAGCGGTCCTTT GAAAGCTACAATCTTAGTCGTAACGTGCCCGAGATGGACTGGGTCGGGCATGGCGTCGAGTGGGCGCGCAATATG ACGGGCGCCACAGGCCGCATGATGCTGCGACTCGAGGGTAACAGCACCGTGATGCGGTATGAGGATGTGGAGCCG CCCGCGGCAGACACGGATCCCAGCGCCAGCCAGCATCTCCCGCTCTCTGGCGGGGCCATCCGCAACGTCAAGGCC ACTCTGACGGTCGAGGACACGGCCGGGTCGGGCCTCAACTGGGAGATGCGGCTGTGGGGGGTGCACTGGCCGCGG CAGGGCGTTGTTCTGCTTACCACGACGAGCGAGAAGTTTGACGGCATCTTGGGCCTGCCGCACCTCACGCCCAGC GCCAGCTTTTTCCGCTCGAGCCGGCGCCTCCTCGAGCAGATACTGGCCCGGGTGCTTGACACCAAAAGCAGCAAC GCCAACATGGACCAGAACATGCCCTGGAACTCCGACGTGGACAATCCGCAGTACACAGCCTATCCTTCGCCCCAC TGCGAGTTTGTCATGTACGCCCAGGTGCACCCTCCGGTCGGCCTGCACGCGCGAGGCGATGCCAAGAGCCAGCAG CCTCAAGACATGATTGCGGCCATTGAGGCGGAGCTGCAGAACCCACTGGGCGCGCCCATCCGCTCGGTGCCGCGT CTCGTCATGTCCGCCGTGGTATGGTCGCCCGACTGCGCCTTTTTCCTCGAGACCAAGGGCCCGCCCGACTTTGCG CCAGGGCCGGCAGACCATCTGACGGGCATGAAGACCGAGGTGCACACGCACCACGTCAAGATGTGGATGCTGGTG TATGCGCTGCTTGTTCTCGGCCAGGTGCGTCTGCTCAAGGACCAGGTCAAGGAGTCGTTGACGCCGTCGACCCTG GGCCGCATCAGCTTCTGGACCATCAGCGCCATGGTCATGGTGGACGGCATGACCTTTACCGCCGCTGCCACTTGG GTCTCGTCGGCCGCCGCCACCTTTTTGCCTACGCTGGCCCTCATGTTTGCTTCCTTCCTCTCCATGACCATTGGC GGCAGCTTTCTGCACAAGATGCACGAGATGCAGCAGCCAGTGGCACGGCTTGGACGCGAGCAGAACCGCGCCTCT TCTCCCCGGCCCACCAGCTCGGCGCCGGCCGACCAGACCCCGACAACCGCCGCCATACTTCCCGGCCCGGTCACG GCCACCCGCGCATCCGGCGCCCCGCAGCAGCCACCCGTCATTGTTCCCTCGGACCAGGACCAAGCCGCAGAAATT GCCCAAGCCGCCTCGGCCGTGCCTCGCCCTGGTTCGGGAGATGCAAACACCACGCCCCAGGCCCTCTCCTTTCAA TCCATTGTTGGCCGCTTCGTCCTGGCCAGTCTCTGTCTCTGCTTCCTGGCCATTTCGTCGTCGACATGGTATCCG CGCCCTCGCTCCCTCTTGCTCAACTTTTGTGCCGCGGCCTACCTGTCTCTTTGGGTCCCCCAGATTTACCGCAAT GCAGTGCGCAACTGTCGCCGCGCTCTGGCATGGCCCTTTGTCATTGGCCAATCTGTGCTGCGCCTACTGCCTATT GCCTACTTTTGGCTCAATGAGGACAATTTTTTATACGCCCGCCCCGACCGTCCGGCGTTCTTCTTGTTTGTGGCC TGGGTCTGGATCCAGATTTTCGTCCTTGCTGCCCAAGACGTGCTTGGCCCGCGCTTTGGTCTGCCTGCTTCGTGG TGTCCCGAAGCCTGGGACTATCACCCGGTCTTGCGCGAGGATGGCCTCGAAGCGGGCGGCTTGCCCATTGGTCTC GTGGCGGCAGCGTCGGACGAGCACGATGCCGACGCTCTGCACAAACATCCCTCTTCCACCTCTCACGACGGCCAC GCTTCCAGTGCGCATGTCAAGCCGCCTGCTGGCTGCTCTCTGCGCGCTATTGACTGCGCAATTTGCAGAGAAGCG CTACAGGTTCCAGTCGTGAAAGCTGGCCACGACGACAGCGCCGCAACCGGTGTTGCTAGCGTCTTTGCTCGCAGG CTCTACATGGTGACGCCATGCCGCCATGTTTTCCACACGGCTTGCCTCGAGGGCTGGATCAAGTTTCGTCTACAA TGCCCCATATGCCGCGACGATTTGCCGCCAATCTAG |