© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauG2|7106 |
| Gene name | |
| Location | Contig_797:606..1729 |
| Strand | - |
| Gene length (bp) | 1123 |
| Transcript length (bp) | 1056 |
| Coding sequence length (bp) | 1056 |
| Protein length (aa) | 352 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00010 | HLH | Helix-loop-helix DNA-binding domain | 1.1E-11 | 232 | 279 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5A1E3|CBF1_CANAL | Transcriptional regulator CBF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBF1 PE=1 SV=1 | 210 | 327 | 6.0E-44 |
| sp|Q10186|YAWC_SCHPO | Uncharacterized bHLH domain-containing protein C3F10.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3F10.12c PE=3 SV=1 | 204 | 330 | 8.0E-38 |
| sp|P17106|CBF1_YEAST | Centromere-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBF1 PE=1 SV=2 | 216 | 335 | 6.0E-29 |
| sp|P49379|CBF1_KLULA | Centromere-binding protein 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CBF1 PE=3 SV=2 | 219 | 337 | 2.0E-27 |
| sp|Q07957|USF1_XENBO | Upstream stimulatory factor 1 OS=Xenopus borealis GN=usf1 PE=2 SV=1 | 116 | 312 | 1.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5A1E3|CBF1_CANAL | Transcriptional regulator CBF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBF1 PE=1 SV=1 | 210 | 327 | 6.0E-44 |
| sp|Q10186|YAWC_SCHPO | Uncharacterized bHLH domain-containing protein C3F10.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3F10.12c PE=3 SV=1 | 204 | 330 | 8.0E-38 |
| sp|P17106|CBF1_YEAST | Centromere-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBF1 PE=1 SV=2 | 216 | 335 | 6.0E-29 |
| sp|P49379|CBF1_KLULA | Centromere-binding protein 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CBF1 PE=3 SV=2 | 219 | 337 | 2.0E-27 |
| sp|Q07957|USF1_XENBO | Upstream stimulatory factor 1 OS=Xenopus borealis GN=usf1 PE=2 SV=1 | 116 | 312 | 1.0E-09 |
| sp|Q6XBT4|USF1_BOVIN | Upstream stimulatory factor 1 OS=Bos taurus GN=USF1 PE=2 SV=1 | 232 | 318 | 4.0E-09 |
| sp|O02818|USF1_RABIT | Upstream stimulatory factor 1 OS=Oryctolagus cuniculus GN=USF1 PE=2 SV=1 | 232 | 318 | 4.0E-09 |
| sp|P22415|USF1_HUMAN | Upstream stimulatory factor 1 OS=Homo sapiens GN=USF1 PE=1 SV=1 | 232 | 318 | 4.0E-09 |
| sp|Q61069|USF1_MOUSE | Upstream stimulatory factor 1 OS=Mus musculus GN=Usf1 PE=1 SV=1 | 232 | 318 | 4.0E-09 |
| sp|Q15853|USF2_HUMAN | Upstream stimulatory factor 2 OS=Homo sapiens GN=USF2 PE=1 SV=1 | 232 | 316 | 1.0E-08 |
| sp|Q63665|USF2_RAT | Upstream stimulatory factor 2 OS=Rattus norvegicus GN=Usf2 PE=1 SV=2 | 232 | 316 | 1.0E-08 |
| sp|Q64705|USF2_MOUSE | Upstream stimulatory factor 2 OS=Mus musculus GN=Usf2 PE=1 SV=1 | 232 | 316 | 1.0E-08 |
| sp|Q05B92|TFE3_BOVIN | Transcription factor E3 OS=Bos taurus GN=TFE3 PE=2 SV=1 | 230 | 286 | 8.0E-07 |
| sp|Q64092|TFE3_MOUSE | Transcription factor E3 OS=Mus musculus GN=Tfe3 PE=1 SV=2 | 230 | 286 | 1.0E-06 |
| sp|P19532|TFE3_HUMAN | Transcription factor E3 OS=Homo sapiens GN=TFE3 PE=1 SV=4 | 230 | 286 | 1.0E-06 |
| sp|O88368|MITF_RAT | Microphthalmia-associated transcription factor (Fragment) OS=Rattus norvegicus GN=Mitf PE=2 SV=1 | 230 | 285 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046983 | protein dimerization activity | Yes |
| GO:0005488 | binding | No |
| GO:0005515 | protein binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Helix-loop-helix |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|7106 MSQQVAKIEADLVSVPGSPGQKRKRDVDSPDGQRTKRTAPPAAMSAETASFIENAIEATHAATASGVSVADFSAL QQAAAADHTEAPDPAQATSTAQAALGMYPTLHVPTSTEDQFAAQASPEADHGHPPQHHEHSYPGDVAQPEPMMDG SSLSPHHAEAHDHQHQAMGQQQHSPMEQPQQLVQTAVPSQAQAQPSPQAANGVQSSAHRYSTSPIAQHPKPSVGS EEWHKMRKDNHKEVERRRRETINEGINELAKIVPGCEKNKGSILQRAVSFITQLKENEQQNIEKWTLEKLLTEQA ITELSASNDKLKQECERLYRELETWKRVAQNAGLEPPQPNKEETNLGTASS* |
| Coding | >OphauG2|7106 ATGTCGCAGCAGGTTGCAAAGATTGAAGCAGACCTTGTCAGCGTTCCCGGCTCTCCTGGGCAGAAGCGCAAGCGC GACGTGGATAGCCCCGACGGGCAGCGCACCAAGCGCACCGCTCCGCCGGCGGCCATGTCGGCCGAGACTGCGTCA TTCATTGAAAATGCGATAGAGGCGACGCATGCCGCGACGGCCAGTGGAGTCAGTGTGGCCGACTTTAGCGCGCTT CAACAGGCTGCTGCTGCTGACCATACAGAGGCGCCGGATCCTGCTCAGGCTACTAGCACCGCGCAGGCGGCCTTG GGTATGTATCCCACTCTTCATGTGCCTACATCGACCGAGGATCAGTTTGCCGCGCAGGCATCGCCCGAGGCCGAT CACGGACACCCGCCACAGCATCACGAGCATAGCTATCCTGGCGATGTGGCGCAGCCCGAGCCCATGATGGATGGT AGCTCTCTGAGCCCCCATCATGCCGAAGCCCACGACCACCAGCATCAAGCAATGGGCCAGCAGCAGCACTCGCCC ATGGAGCAACCCCAGCAGCTTGTTCAGACGGCGGTGCCATCACAGGCCCAGGCCCAACCATCGCCCCAGGCAGCC AACGGTGTGCAATCGTCGGCTCACCGGTATTCCACGTCGCCCATTGCACAACACCCAAAACCCAGTGTCGGATCG GAGGAATGGCATAAAATGCGCAAAGACAACCACAAGGAAGTGGAGAGGCGACGACGTGAAACCATCAACGAGGGC ATCAATGAACTGGCCAAGATTGTTCCTGGGTGCGAAAAAAACAAGGGCTCGATACTGCAGCGGGCAGTGAGCTTC ATTACGCAGCTCAAGGAAAACGAGCAACAAAACATTGAAAAGTGGACGCTGGAAAAGCTGCTCACTGAGCAAGCC ATTACAGAGCTCAGCGCATCCAATGACAAGCTCAAGCAAGAGTGCGAGCGGCTGTACCGCGAGCTGGAGACGTGG AAGCGCGTCGCGCAAAACGCTGGTCTGGAACCGCCGCAGCCAAACAAGGAGGAGACGAATCTGGGCACGGCATCA AGCTAG |
| Transcript | >OphauG2|7106 ATGTCGCAGCAGGTTGCAAAGATTGAAGCAGACCTTGTCAGCGTTCCCGGCTCTCCTGGGCAGAAGCGCAAGCGC GACGTGGATAGCCCCGACGGGCAGCGCACCAAGCGCACCGCTCCGCCGGCGGCCATGTCGGCCGAGACTGCGTCA TTCATTGAAAATGCGATAGAGGCGACGCATGCCGCGACGGCCAGTGGAGTCAGTGTGGCCGACTTTAGCGCGCTT CAACAGGCTGCTGCTGCTGACCATACAGAGGCGCCGGATCCTGCTCAGGCTACTAGCACCGCGCAGGCGGCCTTG GGTATGTATCCCACTCTTCATGTGCCTACATCGACCGAGGATCAGTTTGCCGCGCAGGCATCGCCCGAGGCCGAT CACGGACACCCGCCACAGCATCACGAGCATAGCTATCCTGGCGATGTGGCGCAGCCCGAGCCCATGATGGATGGT AGCTCTCTGAGCCCCCATCATGCCGAAGCCCACGACCACCAGCATCAAGCAATGGGCCAGCAGCAGCACTCGCCC ATGGAGCAACCCCAGCAGCTTGTTCAGACGGCGGTGCCATCACAGGCCCAGGCCCAACCATCGCCCCAGGCAGCC AACGGTGTGCAATCGTCGGCTCACCGGTATTCCACGTCGCCCATTGCACAACACCCAAAACCCAGTGTCGGATCG GAGGAATGGCATAAAATGCGCAAAGACAACCACAAGGAAGTGGAGAGGCGACGACGTGAAACCATCAACGAGGGC ATCAATGAACTGGCCAAGATTGTTCCTGGGTGCGAAAAAAACAAGGGCTCGATACTGCAGCGGGCAGTGAGCTTC ATTACGCAGCTCAAGGAAAACGAGCAACAAAACATTGAAAAGTGGACGCTGGAAAAGCTGCTCACTGAGCAAGCC ATTACAGAGCTCAGCGCATCCAATGACAAGCTCAAGCAAGAGTGCGAGCGGCTGTACCGCGAGCTGGAGACGTGG AAGCGCGTCGCGCAAAACGCTGGTCTGGAACCGCCGCAGCCAAACAAGGAGGAGACGAATCTGGGCACGGCATCA AGCTAG |
| Gene | >OphauG2|7106 ATGTCGCAGCAGGTTGCAAAGATTGAAGCAGACCTTGTCAGCGTTCCCGGCTCTCCTGGGCAGAAGCGCAAGCGC GACGTGGATAGCCCCGACGGGCAGCGCACCAAGCGCACCGCTCCGCCGGCGGCCATGTCGGCCGAGACTGCGTCA TTCATTGAAAATGCGATAGAGGCGACGCATGCCGCGACGGCCAGTGGAGTCAGTGTGGCCGACTTTAGCGCGCTT CAACAGGCTGCTGCTGCTGACCATACAGAGGCGCCGGATCCTGCTCAGGCTACTAGCACCGCGCAGGCGGCCTTG GGTATGTATCCCACTCTTCATGTGCCTACATCGACCGAGGATCAGTTTGCCGCGCAGGCATCGCCCGAGGCCGAT CACGGACACCCGCCACAGCATCACGAGCATAGCTATCCTGGCGATGTGGCGCAGCCCGAGCCCATGATGGATGGT AGCTCTCTGAGCCCCCATCATGCCGAAGCCCACGACCACCAGCATCAAGCAATGGGCCAGCAGCAGCACTCGCCC ATGGAGCAACCCCAGCAGCTTGTTCAGACGGCGGTGCCATCACAGGCCCAGGCCCAACCATCGCCCCAGGCAGCC AACGGTGTGCAATCGTCGGCTCACCGGTATTCCACGTCGCCCATTGCACAACACCCAAAACCCAGTGTCGGATCG GAGGAATGGCATAAAATGCGCAAAGACAACCACAAGGAAGGTGAGATGGCAGCCCCCTCCCCCCCCCTCTTGTTG GCGGAGCTCAAGCTTACTTTGCTTGGCTGTAGTGGAGAGGCGACGACGTGAAACCATCAACGAGGGCATCAATGA ACTGGCCAAGATTGTTCCTGGGTGCGAAAAAAACAAGGGCTCGATACTGCAGCGGGCAGTGAGCTTCATTACGCA GCTCAAGGAAAACGAGCAACAAAACATTGAAAAGTGGACGCTGGAAAAGCTGCTCACTGAGCAAGCCATTACAGA GCTCAGCGCATCCAATGACAAGCTCAAGCAAGAGTGCGAGCGGCTGTACCGCGAGCTGGAGACGTGGAAGCGCGT CGCGCAAAACGCTGGTCTGGAACCGCCGCAGCCAAACAAGGAGGAGACGAATCTGGGCACGGCATCAAGCTAG |