Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|7066
Gene name
LocationContig_788:6137..7093
Strand+
Gene length (bp)956
Transcript length (bp)489
Coding sequence length (bp)489
Protein length (aa) 163

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00098 zf-CCHC Zinc knuckle 2.4E-04 68 80
PF00098 zf-CCHC Zinc knuckle 9.6E-06 101 116
PF00098 zf-CCHC Zinc knuckle 1.8E-09 121 137
PF00098 zf-CCHC Zinc knuckle 2.8E-06 145 161

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 64 161 5.0E-20
sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 66 159 1.0E-18
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 65 161 4.0E-17
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 28 161 1.0E-15
sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 68 160 2.0E-15
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Swissprot ID Swissprot Description Start End E-value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 64 161 5.0E-20
sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 66 159 1.0E-18
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 65 161 4.0E-17
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 28 161 1.0E-15
sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 68 160 2.0E-15
sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 68 160 3.0E-15
sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 61 160 5.0E-14
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 48 162 9.0E-14
sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2 68 159 1.0E-10
sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1 68 159 1.0E-10
sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 68 159 1.0E-10
sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 63 159 1.0E-10
sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 63 159 1.0E-10
sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 63 159 1.0E-10
sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster GN=CG3800 PE=1 SV=1 65 160 1.0E-10
sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 56 159 2.0E-10
sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 56 159 2.0E-10
sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 56 159 2.0E-10
sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1 56 159 3.0E-10
sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2 56 159 7.0E-10
sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 66 160 8.0E-10
sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 65 161 2.0E-09
sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 56 159 2.0E-09
sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 65 161 2.0E-09
sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 65 161 2.0E-09
sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 100 160 3.0E-09
sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2 65 161 5.0E-09
sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1 65 161 7.0E-09
sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 65 161 9.0E-09
sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 67 147 1.0E-08
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1 64 159 3.0E-08
sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 68 162 1.0E-07
sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 47 159 2.0E-07
sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis encephalitis virus (strain Cork) GN=gag PE=3 SV=1 94 135 2.0E-07
sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 101 160 4.0E-07
sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 103 160 5.0E-07
sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein 3 OS=Homo sapiens GN=ZCCHC3 PE=1 SV=1 10 161 7.0E-07
sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 66 160 1.0E-06
sp|P24107|POL_HV2CA Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate CAM2) GN=gag-pol PE=3 SV=3 120 161 1.0E-06
sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 101 159 2.0E-06
sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1 96 139 2.0E-06
sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain 1514) GN=gag PE=3 SV=1 98 142 2.0E-06
sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS1) GN=gag PE=3 SV=1 98 142 2.0E-06
sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain KV1772) GN=gag PE=3 SV=1 98 142 2.0E-06
sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2) GN=gag PE=3 SV=1 98 142 2.0E-06
sp|P04584|POL_HV2RO Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate ROD) GN=gag-pol PE=1 SV=3 119 161 2.0E-06
sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29) GN=gag-pol PE=1 SV=2 87 135 3.0E-06
sp|P19505|POL_SIVSP Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate PBj14/BCL-3) GN=gag-pol PE=1 SV=2 120 160 3.0E-06
sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet (isolate AGM gr-1) GN=gag-pol PE=3 SV=2 103 145 3.0E-06
sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B (isolate D205) GN=gag-pol PE=3 SV=3 99 145 3.0E-06
sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N (isolate YBF30) GN=gag-pol PE=3 SV=3 120 161 3.0E-06
sp|A1L2T6|ZCHC7_XENLA Zinc finger CCHC domain-containing protein 7 OS=Xenopus laevis GN=zcchc7 PE=2 SV=2 64 160 3.0E-06
sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1 87 135 7.0E-06
sp|P24106|GAG_HV2CA Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate CAM2) GN=gag PE=3 SV=3 120 161 9.0E-06
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GO

GO Term Description Terminal node
GO:0008270 zinc ion binding Yes
GO:0003676 nucleic acid binding Yes
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No
GO:0046914 transition metal ion binding No
GO:0046872 metal ion binding No
GO:0043169 cation binding No
GO:0005488 binding No
GO:0043167 ion binding No
GO:0097159 organic cyclic compound binding No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Zinc finger, CCHC-type

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup11804
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7066 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|7066
MPAAPLAIRLVIARPAALLNATTVAARATSVENAPSPSKTTSRVTNVDSQDISRVIVLPAVVPVVLECGEMGHIA
RSCPKSSFGGTSYGGGSFGPGGGAGKTCYSCGGYGHMSRECVNGMKCYNCGETGHFSRECPKESAGGERICYKCQ
QPGHVQAQCPNN*
Coding >OphauG2|7066
ATGCCTGCGGCTCCACTGGCCATCAGGCTCGTGATTGCCCGTCCCGCGGCCCTGCTAAATGCTACAACTGTGGCG
GCGAGGGCCACATCAGTCGAGAATGCCCCGAGCCCCTCAAAGACAACAAGTCGTGTTACAAATGTGGACAGCCAG
GACATATCTCGCGTGATTGTCCTACCAGCGGTGGTGCCGGTGGTGCTGGAGTGCGGAGAAATGGGACATATTGCC
CGCAGCTGTCCCAAATCTTCGTTTGGCGGTACGTCGTATGGCGGTGGCAGCTTTGGACCCGGTGGTGGCGCTGGC
AAGACTTGCTATTCTTGCGGAGGATACGGCCACATGTCGCGTGAGTGCGTCAATGGCATGAAGTGCTATAATTGT
GGTGAGACGGGCCACTTCTCCAGAGAGTGCCCTAAGGAATCGGCTGGAGGCGAAAGGATCTGTTATAAATGCCAA
CAACCTGGACACGTGCAGGCTCAGTGCCCCAACAACTAA
Transcript >OphauG2|7066
ATGCCTGCGGCTCCACTGGCCATCAGGCTCGTGATTGCCCGTCCCGCGGCCCTGCTAAATGCTACAACTGTGGCG
GCGAGGGCCACATCAGTCGAGAATGCCCCGAGCCCCTCAAAGACAACAAGTCGTGTTACAAATGTGGACAGCCAG
GACATATCTCGCGTGATTGTCCTACCAGCGGTGGTGCCGGTGGTGCTGGAGTGCGGAGAAATGGGACATATTGCC
CGCAGCTGTCCCAAATCTTCGTTTGGCGGTACGTCGTATGGCGGTGGCAGCTTTGGACCCGGTGGTGGCGCTGGC
AAGACTTGCTATTCTTGCGGAGGATACGGCCACATGTCGCGTGAGTGCGTCAATGGCATGAAGTGCTATAATTGT
GGTGAGACGGGCCACTTCTCCAGAGAGTGCCCTAAGGAATCGGCTGGAGGCGAAAGGATCTGTTATAAATGCCAA
CAACCTGGACACGTGCAGGCTCAGTGCCCCAACAACTAA
Gene >OphauG2|7066
ATGCCTGTGAGTACCCAGTTGCATCTTTTCTGTCATGGCTCTACGCCTTTTCTCTCAGCCTCTCTAACAAACTTT
GCGCAGGCGGCTCCACTGGCCATCAGGTACGGGAAACGATACCGTGTGCTAGAACCCTAGCCTGACAACTGCTGC
TCTAGGCTCGTGATTGCCCGTCCCGCGGCCCTGCTAAATGGTGAGTTTGCATGAGCTCTGTAATATGTCCTCGAA
CGTTTGGAATTGACGGATTGATTTAGCTACAACTGTGGCGGTATGCCCCAACACTTCACTGCCTCGTACTTGCAG
TCTTGCTAATCGCAGATGCATTGCTCCAGGCGAGGGCCACATCAGTAAGTACTCCATTCTTAGACTATGAAATGG
CTTTTGGCTCACAAAACTTCTTCAAGGTCGAGAATGCCCCGAGCCCCTCAAAGACAACAAGTCGTGTTACAAATG
TGGACAGCCAGGACATATCTCGCGTGATTGTCCTACCAGCGGTGGTGCCGGTGGTGCTGGAGGTAATGGGCCATC
AACTGAATGTTACAAGGTAAATCTAGGTTCTTCACTGCACTGTGCTACCACCAGCACCAGCGTCAGCGTCAGCTA
ACGCGGAAAACCAGTGCGGAGAAATGGGACATATTGCCCGCAGCTGTCCCAAATCTTCGTTTGGCGGTACGTCGT
ATGGCGGTGGCAGCTTTGGACCCGGTGGTGGCGCTGGCAAGACTTGCTATTCTTGCGGAGGATACGGCCACATGT
CGCGTAAGGAAACACCTTTTTGCCCCAGCTTTCTTTGAGATGCTGACCGTGATACAGGTGAGTGCGTCAATGGCA
TGAAGTGCTATAATTGTGGTGAGACGGGCCACTTCTCCAGAGAGTGCCCTAAGGAATCGGCTGGAGGCGAAAGGA
TCTGTTATAAATGCCAACAACCTGGACACGTGCAGGCTCAGTGCCCCAACAACTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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