Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|6923
Gene name
LocationContig_756:3219..4529
Strand-
Gene length (bp)1310
Transcript length (bp)1239
Coding sequence length (bp)1239
Protein length (aa) 413

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03178 CPSF_A CPSF A subunit region 1.9E-95 56 377

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2 2 412 0.0E+00
sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=msp-5 PE=3 SV=2 1 412 0.0E+00
sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3 SV=1 1 404 0.0E+00
sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1 PE=3 SV=2 1 412 0.0E+00
sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp12 PE=1 SV=1 1 410 2.0E-117
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Swissprot ID Swissprot Description Start End E-value
sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2 2 412 0.0E+00
sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=msp-5 PE=3 SV=2 1 412 0.0E+00
sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3 SV=1 1 404 0.0E+00
sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1 PE=3 SV=2 1 412 0.0E+00
sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp12 PE=1 SV=1 1 410 2.0E-117
sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RSE1 PE=3 SV=1 3 407 6.0E-117
sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RSE1 PE=3 SV=1 1 412 9.0E-116
sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1 1 412 9.0E-116
sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4 41 412 3.0E-107
sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1 41 412 3.0E-107
sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum GN=sf3b3 PE=3 SV=1 45 409 3.0E-107
sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1 41 412 9.0E-107
sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=1 SV=1 41 412 2.0E-106
sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1 41 412 6.0E-103
sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RSE1 PE=3 SV=2 44 412 2.0E-94
sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RSE1 PE=3 SV=1 34 412 2.0E-71
sp|Q6CAH5|RSE1_YARLI Pre-mRNA-splicing factor RSE1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RSE1 PE=3 SV=1 95 385 5.0E-47
sp|Q753D4|RSE1_ASHGO Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RSE1 PE=3 SV=2 128 408 4.0E-43
sp|Q04693|RSE1_YEAST Pre-mRNA-splicing factor RSE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSE1 PE=1 SV=1 77 409 4.0E-35
sp|Q6CXH8|RSE1_KLULA Pre-mRNA-splicing factor RSE1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RSE1 PE=3 SV=1 105 387 1.0E-32
sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1 SV=1 135 406 1.0E-17
sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=1 SV=1 71 392 1.0E-15
sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1 71 392 4.0E-15
sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=1 SV=1 71 392 6.0E-15
sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2 71 392 6.0E-15
sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1 SV=1 71 392 6.0E-15
sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1 71 392 7.0E-15
sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=1 SV=1 71 392 9.0E-15
sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1 71 392 2.0E-14
sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2 SV=2 72 406 3.0E-12
sp|Q6FLQ6|RSE1_CANGA Pre-mRNA-splicing factor RSE1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RSE1 PE=3 SV=1 133 357 9.0E-12
sp|Q21554|DDB1_CAEEL DNA damage-binding protein 1 OS=Caenorhabditis elegans GN=ddb-1 PE=1 SV=2 93 405 4.0E-11
sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1 SV=1 72 406 9.0E-11
sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1 72 406 4.0E-10
sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmaniae GN=DDB1 PE=3 SV=1 72 406 4.0E-10
sp|B0M0P5|DDB1_DICDI DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE PE=1 SV=1 147 407 4.0E-09
sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2 86 412 2.0E-07
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GO

GO Term Description Terminal node
GO:0005634 nucleus Yes
GO:0003676 nucleic acid binding Yes
GO:0003674 molecular_function No
GO:0043229 intracellular organelle No
GO:0043231 intracellular membrane-bounded organelle No
GO:1901363 heterocyclic compound binding No
GO:0043227 membrane-bounded organelle No
GO:0043226 organelle No
GO:0005488 binding No
GO:0097159 organic cyclic compound binding No
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup11796
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6923 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|6923
MRHPDQPLFYTIEADNHTLPPELREKLLSEPSAVNGDVKVLPPDVFGYPRGNRHWASCISIVDPVSEEPRVLQTL
HLDNNECAVSMTIVPFASQDGENFLVVGTAKDLVINPRSFSEAAIHIYRLNDNGRDAEFVHRTVVEEPPMALVHF
QGKLLAGIGTMLRMYDLGMRQMLRKAQASVSPQQIVSLSSQGSRIVVGDVSQGITYVAYKAATNKLLPFADDAIP
RWTTCSAMVDYESVAGGDKFGNIFVVRCPPKASEEADEEGTGIHLMNARSYLHGTSHRLDLMCHFYTQDIPTSVE
KTSLVVGGQDVLLWSGLVGTIGVFIPLVSREDADFFQSLEQHLRTEDAPLTGRDHLIYRSYYAPVKGVIDGDLCE
RYNLLPHEKKMMIAAELDRSVREIERKISDIRTRSAF*
Coding >OphauG2|6923
ATGAGACATCCGGACCAGCCTCTGTTTTACACCATTGAAGCAGACAACCATACCCTCCCACCGGAACTAAGAGAG
AAGCTCTTGTCTGAGCCGTCGGCAGTCAATGGCGATGTAAAGGTGCTACCACCAGATGTCTTTGGTTATCCCCGG
GGCAATCGCCACTGGGCGTCATGCATTAGCATTGTCGATCCCGTGTCTGAAGAGCCAAGAGTCTTGCAAACACTT
CATTTGGATAACAACGAGTGTGCTGTTAGCATGACGATTGTGCCATTTGCCAGTCAGGATGGTGAAAACTTTTTG
GTCGTGGGGACTGCCAAAGATTTGGTGATTAATCCTCGGAGCTTCTCAGAAGCGGCCATTCACATATACCGCCTC
AACGACAACGGTCGCGACGCCGAATTTGTGCATAGGACCGTGGTTGAAGAGCCTCCCATGGCGCTTGTGCATTTC
CAGGGGAAGCTGTTGGCTGGAATCGGCACCATGTTGCGCATGTATGATCTTGGGATGCGGCAAATGCTACGCAAG
GCCCAGGCGTCGGTATCGCCCCAGCAGATTGTCTCTCTTAGCTCGCAGGGCAGCCGTATTGTGGTTGGAGACGTC
AGCCAGGGCATCACCTATGTCGCATACAAGGCAGCGACCAACAAGCTCCTCCCATTCGCCGACGATGCCATCCCG
AGATGGACGACGTGCTCGGCCATGGTGGACTATGAATCAGTTGCTGGTGGTGATAAATTTGGCAACATATTTGTT
GTGCGATGCCCGCCAAAAGCGAGCGAAGAAGCAGACGAGGAAGGCACTGGGATCCACCTGATGAATGCGAGAAGC
TATCTCCATGGCACGTCACATCGTCTGGATCTAATGTGCCATTTTTACACGCAAGATATTCCAACAAGTGTTGAA
AAAACTAGTCTTGTGGTGGGCGGGCAGGATGTGTTGCTGTGGAGCGGACTAGTGGGCACCATTGGCGTCTTTATA
CCTCTAGTCAGCCGCGAGGACGCAGACTTCTTCCAAAGCCTGGAGCAGCATCTGCGAACCGAAGATGCGCCCCTC
ACCGGGCGAGATCATCTCATCTATCGCAGCTATTATGCGCCGGTCAAGGGCGTTATCGACGGCGACCTTTGTGAG
AGGTACAACTTGCTTCCACATGAGAAGAAGATGATGATTGCGGCCGAGCTTGATCGGTCAGTGCGAGAAATTGAG
AGAAAGATATCGGATATCCGGACGAGATCTGCATTTTGA
Transcript >OphauG2|6923
ATGAGACATCCGGACCAGCCTCTGTTTTACACCATTGAAGCAGACAACCATACCCTCCCACCGGAACTAAGAGAG
AAGCTCTTGTCTGAGCCGTCGGCAGTCAATGGCGATGTAAAGGTGCTACCACCAGATGTCTTTGGTTATCCCCGG
GGCAATCGCCACTGGGCGTCATGCATTAGCATTGTCGATCCCGTGTCTGAAGAGCCAAGAGTCTTGCAAACACTT
CATTTGGATAACAACGAGTGTGCTGTTAGCATGACGATTGTGCCATTTGCCAGTCAGGATGGTGAAAACTTTTTG
GTCGTGGGGACTGCCAAAGATTTGGTGATTAATCCTCGGAGCTTCTCAGAAGCGGCCATTCACATATACCGCCTC
AACGACAACGGTCGCGACGCCGAATTTGTGCATAGGACCGTGGTTGAAGAGCCTCCCATGGCGCTTGTGCATTTC
CAGGGGAAGCTGTTGGCTGGAATCGGCACCATGTTGCGCATGTATGATCTTGGGATGCGGCAAATGCTACGCAAG
GCCCAGGCGTCGGTATCGCCCCAGCAGATTGTCTCTCTTAGCTCGCAGGGCAGCCGTATTGTGGTTGGAGACGTC
AGCCAGGGCATCACCTATGTCGCATACAAGGCAGCGACCAACAAGCTCCTCCCATTCGCCGACGATGCCATCCCG
AGATGGACGACGTGCTCGGCCATGGTGGACTATGAATCAGTTGCTGGTGGTGATAAATTTGGCAACATATTTGTT
GTGCGATGCCCGCCAAAAGCGAGCGAAGAAGCAGACGAGGAAGGCACTGGGATCCACCTGATGAATGCGAGAAGC
TATCTCCATGGCACGTCACATCGTCTGGATCTAATGTGCCATTTTTACACGCAAGATATTCCAACAAGTGTTGAA
AAAACTAGTCTTGTGGTGGGCGGGCAGGATGTGTTGCTGTGGAGCGGACTAGTGGGCACCATTGGCGTCTTTATA
CCTCTAGTCAGCCGCGAGGACGCAGACTTCTTCCAAAGCCTGGAGCAGCATCTGCGAACCGAAGATGCGCCCCTC
ACCGGGCGAGATCATCTCATCTATCGCAGCTATTATGCGCCGGTCAAGGGCGTTATCGACGGCGACCTTTGTGAG
AGGTACAACTTGCTTCCACATGAGAAGAAGATGATGATTGCGGCCGAGCTTGATCGGTCAGTGCGAGAAATTGAG
AGAAAGATATCGGATATCCGGACGAGATCTGCATTTTGA
Gene >OphauG2|6923
ATGAGACATCCGGACCAGCCTCTGTTTTACACCATTGAAGCAGACAACCATACCCTCCCACCGGAACTAAGAGAG
AAGCTCTTGTCTGAGCCGTCGGCAGTCAATGGCGATGTAAAGGTGCTACCACCAGATGTCTTTGGTTATCCCCGG
GGCAATCGCCACTGGGCGTCATGCATTAGCATTGTCGATCCCGTGTCTGAAGAGCCAAGAGTCTTGCAAACACTT
CATTTGGATAACAACGAGTGTGCTGTTAGCATGACGATTGTGCCATTTGCCAGTCAGGATGGTGAAAACTTTTTG
GTCGTGGGGACTGCCAAAGATTTGGTGATTAATCCTCGGAGCTTCTCAGAAGCGGCCATTCACATATACCGCCTC
AACGACAACGGTCGCGACGCCGAATTTGTGCATAGGACCGTGGTTGAAGAGCCTCCCATGGCGCTTGTGCATTTC
CAGGGGAAGCTGTTGGCTGGAATCGGCACCATGTTGCGCATGTATGATCTTGGGATGCGGCAAATGCTACGCAAG
GCCCAGGCGTCGGTATCGCCCCAGCAGATTGTCTCTCTTAGCTCGCAGGGCAGCCGTATTGTGGTTGGAGACGTC
AGCCAGGGCATCACCTATGTCGCATACAAGGCAGCGACCAACAAGCTCCTCCCATTCGCCGACGATGCCATCCCG
AGATGGACGACGTGCTCGGCCATGGTGGACTATGAATCAGTTGCTGGTGGTGATAAATTTGGCAACATATTTGTT
GTGCGATGCCCGCCAAAAGCGAGCGAAGAAGCAGACGAGGAAGGCACTGGGATCCACCTGATGAATGCGAGAAGC
TATCTCCATGGCACGTCACATCGTCTGGATCTAATGTGCCATTTTTACACGCAAGATATTCCAACAAGTGTTGAA
AAAACTAGTCTTGTGGTGGGCGGGCAGGATGTGTTGCTGTGGAGCGGACTAGTGGGCACCATTGGCGTCTTTATA
CCTCTAGTCAGCCGCGAGGACGCAGACTTCTTCCAAAGCCTGGAGCAGCATCTGCGAACCGAAGATGCGCCCCTC
ACCGGGCGAGATCATCTCATCTATCGCAGCTATTATGCGCCGGTCAAGGGCGTTATCGACGGCGACCTTTGTGAG
AGGTACAACTTGCTTCCACATGAGAAGAAGATGATGATTGCGGCCGAGCTTGATCGGTCAGTGCGAGAAATTGAG
AGAAAGATATCGGTAAGGATTTTTTATTTTGTTACGCGGAGACGTGAGAATTAAAGCAGGCGAGTGCTGACAGCC
TTTGACAGGATATCCGGACGAGATCTGCATTTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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