© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|6920 |
| Gene name | |
| Location | Contig_755:8396..9113 |
| Strand | + |
| Gene length (bp) | 717 |
| Transcript length (bp) | 717 |
| Coding sequence length (bp) | 717 |
| Protein length (aa) | 239 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 5.1E-06 | 101 | 125 |
| PF12874 | zf-met | Zinc-finger of C2H2 type | 2.4E-05 | 101 | 125 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09776|SNU23_SCHPO | U4/U6.U5 small nuclear ribonucleoprotein component snu23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snu23 PE=3 SV=4 | 63 | 235 | 8.0E-22 |
| sp|P34670|YO14_CAEEL | Putative zinc finger protein ZK686.4 OS=Caenorhabditis elegans GN=ZK686.4 PE=4 SV=1 | 11 | 237 | 6.0E-17 |
| sp|Q9CPW7|ZMAT2_MOUSE | Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1 | 9 | 237 | 4.0E-16 |
| sp|Q96NC0|ZMAT2_HUMAN | Zinc finger matrin-type protein 2 OS=Homo sapiens GN=ZMAT2 PE=1 SV=1 | 9 | 237 | 4.0E-16 |
| sp|Q12368|SNU23_YEAST | 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNU23 PE=1 SV=1 | 20 | 237 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|6920 MADSKKTSAYGAPASDTDFRKTWDLDEYAAKAKEREASERLEAKARYEAKLAGKKYHKPLTGNETFTTARRTVLD LSAQVGKTQLVPAGAGVGRRGRSAGFYCEACDVTLKDNKQYVEHLNTMSHLARAGQTAEVRRASVDEVRARIEHY VQRRAELQAEHATSLQARLELRKEERERETEEKRAKRRAEAERRRGTRKEEDRVKQEYGEDVRIEGEHDEDDMMA QLGFTGFATSKKG* |
| Coding | >OphauG2|6920 ATGGCCGACTCGAAAAAGACGAGCGCATACGGCGCACCAGCCAGCGATACCGACTTTCGCAAAACATGGGACCTT GACGAATATGCCGCCAAGGCCAAAGAGCGCGAAGCCTCTGAACGCCTCGAAGCAAAAGCACGCTACGAAGCCAAG CTCGCGGGCAAAAAATACCACAAGCCGCTGACGGGCAACGAAACCTTTACCACTGCGCGGCGCACCGTCCTCGAC CTCAGCGCCCAGGTTGGCAAAACCCAGCTCGTCCCCGCAGGCGCAGGCGTGGGCCGCCGGGGCCGCAGCGCCGGC TTCTACTGCGAGGCATGCGACGTGACGCTCAAGGACAACAAGCAGTATGTCGAGCACCTCAACACCATGTCGCAT CTGGCGCGCGCGGGCCAAACAGCCGAGGTGCGGCGCGCAAGTGTGGACGAGGTGCGAGCGCGCATAGAGCATTAT GTCCAGCGCAGGGCAGAGCTGCAAGCAGAGCACGCAACCAGTCTACAGGCGCGGCTGGAGCTGCGCAAGGAGGAG CGCGAGCGGGAGACGGAGGAGAAGCGGGCGAAGCGCAGGGCCGAGGCCGAGCGGCGGCGAGGGACTAGGAAAGAG GAGGACAGGGTGAAGCAGGAGTATGGCGAGGATGTGCGCATCGAGGGGGAGCACGACGAGGACGACATGATGGCG CAACTGGGCTTTACTGGCTTTGCCACGTCGAAGAAGGGGTGA |
| Transcript | >OphauG2|6920 ATGGCCGACTCGAAAAAGACGAGCGCATACGGCGCACCAGCCAGCGATACCGACTTTCGCAAAACATGGGACCTT GACGAATATGCCGCCAAGGCCAAAGAGCGCGAAGCCTCTGAACGCCTCGAAGCAAAAGCACGCTACGAAGCCAAG CTCGCGGGCAAAAAATACCACAAGCCGCTGACGGGCAACGAAACCTTTACCACTGCGCGGCGCACCGTCCTCGAC CTCAGCGCCCAGGTTGGCAAAACCCAGCTCGTCCCCGCAGGCGCAGGCGTGGGCCGCCGGGGCCGCAGCGCCGGC TTCTACTGCGAGGCATGCGACGTGACGCTCAAGGACAACAAGCAGTATGTCGAGCACCTCAACACCATGTCGCAT CTGGCGCGCGCGGGCCAAACAGCCGAGGTGCGGCGCGCAAGTGTGGACGAGGTGCGAGCGCGCATAGAGCATTAT GTCCAGCGCAGGGCAGAGCTGCAAGCAGAGCACGCAACCAGTCTACAGGCGCGGCTGGAGCTGCGCAAGGAGGAG CGCGAGCGGGAGACGGAGGAGAAGCGGGCGAAGCGCAGGGCCGAGGCCGAGCGGCGGCGAGGGACTAGGAAAGAG GAGGACAGGGTGAAGCAGGAGTATGGCGAGGATGTGCGCATCGAGGGGGAGCACGACGAGGACGACATGATGGCG CAACTGGGCTTTACTGGCTTTGCCACGTCGAAGAAGGGGTGA |
| Gene | >OphauG2|6920 ATGGCCGACTCGAAAAAGACGAGCGCATACGGCGCACCAGCCAGCGATACCGACTTTCGCAAAACATGGGACCTT GACGAATATGCCGCCAAGGCCAAAGAGCGCGAAGCCTCTGAACGCCTCGAAGCAAAAGCACGCTACGAAGCCAAG CTCGCGGGCAAAAAATACCACAAGCCGCTGACGGGCAACGAAACCTTTACCACTGCGCGGCGCACCGTCCTCGAC CTCAGCGCCCAGGTTGGCAAAACCCAGCTCGTCCCCGCAGGCGCAGGCGTGGGCCGCCGGGGCCGCAGCGCCGGC TTCTACTGCGAGGCATGCGACGTGACGCTCAAGGACAACAAGCAGTATGTCGAGCACCTCAACACCATGTCGCAT CTGGCGCGCGCGGGCCAAACAGCCGAGGTGCGGCGCGCAAGTGTGGACGAGGTGCGAGCGCGCATAGAGCATTAT GTCCAGCGCAGGGCAGAGCTGCAAGCAGAGCACGCAACCAGTCTACAGGCGCGGCTGGAGCTGCGCAAGGAGGAG CGCGAGCGGGAGACGGAGGAGAAGCGGGCGAAGCGCAGGGCCGAGGCCGAGCGGCGGCGAGGGACTAGGAAAGAG GAGGACAGGGTGAAGCAGGAGTATGGCGAGGATGTGCGCATCGAGGGGGAGCACGACGAGGACGACATGATGGCG CAACTGGGCTTTACTGGCTTTGCCACGTCGAAGAAGGGGTGA |