Protein ID | OphauG2|6864 |
Gene name | |
Location | Contig_744:7331..8139 |
Strand | + |
Gene length (bp) | 808 |
Transcript length (bp) | 654 |
Coding sequence length (bp) | 654 |
Protein length (aa) | 218 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04387 | PTPLA | Protein tyrosine phosphatase-like protein, PTPLA | 5.6E-53 | 59 | 206 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14346|HACD_SCHPO | Probable very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19C2.15c PE=3 SV=2 | 12 | 208 | 1.0E-42 |
sp|Q8VZB2|HACD_ARATH | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1 | 12 | 211 | 2.0E-30 |
sp|Q5ZEJ0|HACDB_ORYSJ | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica GN=PAS2B PE=2 SV=1 | 12 | 201 | 6.0E-29 |
sp|Q7XSZ4|HACDA_ORYSJ | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2 | 12 | 201 | 9.0E-29 |
sp|P40857|HACD_YEAST | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PHS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHS1 PE=1 SV=1 | 14 | 214 | 2.0E-28 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14346|HACD_SCHPO | Probable very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19C2.15c PE=3 SV=2 | 12 | 208 | 1.0E-42 |
sp|Q8VZB2|HACD_ARATH | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1 | 12 | 211 | 2.0E-30 |
sp|Q5ZEJ0|HACDB_ORYSJ | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica GN=PAS2B PE=2 SV=1 | 12 | 201 | 6.0E-29 |
sp|Q7XSZ4|HACDA_ORYSJ | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2 | 12 | 201 | 9.0E-29 |
sp|P40857|HACD_YEAST | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PHS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHS1 PE=1 SV=1 | 14 | 214 | 2.0E-28 |
sp|O17040|HACD_CAEEL | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8 OS=Caenorhabditis elegans GN=hpo-8 PE=3 SV=2 | 14 | 213 | 2.0E-28 |
sp|Q9D3B1|HACD2_MOUSE | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Mus musculus GN=Hacd2 PE=1 SV=1 | 2 | 213 | 2.0E-23 |
sp|Q2KIP8|HACD2_BOVIN | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Bos taurus GN=HACD2 PE=2 SV=2 | 8 | 213 | 2.0E-23 |
sp|Q6Y1H2|HACD2_HUMAN | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Homo sapiens GN=HACD2 PE=1 SV=1 | 13 | 213 | 2.0E-23 |
sp|Q5RBK3|HACD2_PONAB | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Pongo abelii GN=HACD2 PE=2 SV=1 | 13 | 213 | 2.0E-23 |
sp|Q9QY80|HACD1_MOUSE | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus GN=Hacd1 PE=2 SV=1 | 2 | 205 | 4.0E-23 |
sp|B0YJ81|HACD1_HUMAN | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Homo sapiens GN=HACD1 PE=1 SV=1 | 13 | 205 | 2.0E-22 |
sp|Q4W1W1|HACD1_CANLF | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris GN=HACD1 PE=2 SV=1 | 13 | 205 | 2.0E-22 |
sp|Q9N1R5|HACD1_SHEEP | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Ovis aries GN=HACD1 PE=2 SV=1 | 2 | 205 | 2.0E-21 |
sp|Q5ZM57|HACD3_CHICK | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Gallus gallus GN=HACD3 PE=2 SV=1 | 12 | 216 | 4.0E-18 |
sp|Q5NVQ2|HACD3_PONAB | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 OS=Pongo abelii GN=HACD3 PE=2 SV=1 | 12 | 211 | 8.0E-14 |
sp|Q9P035|HACD3_HUMAN | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 OS=Homo sapiens GN=HACD3 PE=1 SV=2 | 12 | 211 | 8.0E-14 |
sp|A7YY55|HACD3_BOVIN | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 OS=Bos taurus GN=HACD3 PE=2 SV=1 | 9 | 211 | 8.0E-14 |
sp|Q8K2C9|HACD3_MOUSE | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 OS=Mus musculus GN=Hacd3 PE=1 SV=2 | 12 | 211 | 2.0E-13 |
sp|Q7SY06|HACD3_DANRE | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Danio rerio GN=hacd3 PE=2 SV=2 | 7 | 200 | 2.0E-11 |
sp|A2AKM2|HACD4_MOUSE | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 OS=Mus musculus GN=Hacd4 PE=2 SV=2 | 15 | 215 | 1.0E-10 |
sp|Q5VWC8|HACD4_HUMAN | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 OS=Homo sapiens GN=HACD4 PE=1 SV=1 | 6 | 214 | 2.0E-10 |
sp|Q6GNB5|HACD4_XENLA | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Xenopus laevis GN=hacd4 PE=2 SV=1 | 15 | 162 | 8.0E-09 |
sp|Q0P5C7|HACD4_BOVIN | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 OS=Bos taurus GN=HACD4 PE=2 SV=1 | 6 | 214 | 1.0E-06 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 41 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 15 | 37 | 22 |
2 | 64 | 86 | 22 |
3 | 101 | 123 | 22 |
4 | 143 | 165 | 22 |
5 | 178 | 195 | 17 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauG2|6864 MASNQMPPCSPRTAYLIAYNAASALAWAVVLCRTLAVSVGHHNPQLAYAVVGHWTKWTQTMAALEVLHSLLGLVG APWTTTLMQVASRYLLVWGIINPFPYLALVPVYASMLTAWSIAEVIRYSYFALSLARCRPAALTWLRYNSFVILY PIGILSESCLVYLATEPAGVISPLAKYALYAVLVLYVPGSYVLYSHMMKQRRKVMGSARPKDQKARQ* |
Coding | >OphauG2|6864 ATGGCGTCCAACCAAATGCCGCCATGCTCGCCTCGCACCGCCTATCTGATTGCTTACAATGCAGCCTCCGCCCTA GCCTGGGCTGTGGTGCTGTGCCGCACTCTGGCCGTCAGCGTCGGCCACCACAACCCGCAGCTCGCCTATGCCGTC GTTGGCCACTGGACAAAGTGGACGCAGACAATGGCTGCTCTCGAGGTATTGCACTCACTGCTCGGCCTCGTTGGC GCTCCTTGGACCACGACGCTCATGCAGGTCGCGTCTCGCTACTTGCTCGTCTGGGGCATTATCAACCCGTTTCCC TATCTGGCATTGGTGCCCGTCTACGCGTCGATGCTCACGGCCTGGTCCATTGCCGAAGTGATTCGCTACTCCTAC TTTGCCCTTAGCCTGGCGCGCTGCCGTCCTGCCGCCCTGACGTGGCTTCGCTACAACTCGTTTGTCATACTTTAC CCAATTGGCATTTTGAGCGAGTCTTGTCTTGTCTACCTAGCCACGGAGCCTGCTGGCGTCATCAGTCCGCTGGCA AAGTATGCTCTCTACGCTGTGCTCGTGCTGTACGTTCCGGGCTCCTACGTCCTGTACTCGCACATGATGAAGCAG AGGCGAAAGGTCATGGGCTCGGCGAGACCAAAGGACCAAAAGGCAAGGCAATGA |
Transcript | >OphauG2|6864 ATGGCGTCCAACCAAATGCCGCCATGCTCGCCTCGCACCGCCTATCTGATTGCTTACAATGCAGCCTCCGCCCTA GCCTGGGCTGTGGTGCTGTGCCGCACTCTGGCCGTCAGCGTCGGCCACCACAACCCGCAGCTCGCCTATGCCGTC GTTGGCCACTGGACAAAGTGGACGCAGACAATGGCTGCTCTCGAGGTATTGCACTCACTGCTCGGCCTCGTTGGC GCTCCTTGGACCACGACGCTCATGCAGGTCGCGTCTCGCTACTTGCTCGTCTGGGGCATTATCAACCCGTTTCCC TATCTGGCATTGGTGCCCGTCTACGCGTCGATGCTCACGGCCTGGTCCATTGCCGAAGTGATTCGCTACTCCTAC TTTGCCCTTAGCCTGGCGCGCTGCCGTCCTGCCGCCCTGACGTGGCTTCGCTACAACTCGTTTGTCATACTTTAC CCAATTGGCATTTTGAGCGAGTCTTGTCTTGTCTACCTAGCCACGGAGCCTGCTGGCGTCATCAGTCCGCTGGCA AAGTATGCTCTCTACGCTGTGCTCGTGCTGTACGTTCCGGGCTCCTACGTCCTGTACTCGCACATGATGAAGCAG AGGCGAAAGGTCATGGGCTCGGCGAGACCAAAGGACCAAAAGGCAAGGCAATGA |
Gene | >OphauG2|6864 ATGGCGTCCAACCAAATGCCGCCATGCTCGCCTCGCACCGCCTATCTGATTGCTTACAATGCAGCCTCCGCCCTA GCCTGGGCTGTGGTGCTGTGCCGCACTCTGGCCGTCAGCGTCGGCCACCACAACCCGCAGCTCGCCTATGCCGTC GTTGGCCACTGGACAAAGTGGACGCAGACAATGGCTGCTCTCGAGGTATTGCACTCACTGCTCGGTACGTTGAGC GGCAAAAAATGAAGAAAAAAGAAGACAAGACAATTGCTTGGCCGCTGAGCCCAGAGTGCTGACGGCCCGAGGCTA GGCCTCGTTGGCGCTCCTTGGACCACGACGCTCATGCAGGTCGCGTCTCGCTACTTGCTCGTCTGGGGCATTATC AACCCGTTTCCCTATCTGGCATTGGTGCCCGTCTACGCGTCGATGCTCACGGCCTGGTCCATTGCCGAAGTGATT CGCTACTCCTACTTTGCCCTTAGCCTGGCGCGCTGCCGTCCTGCCGCCCTGACGTGGCTTCGCTACAACTCGTTT GTCATACTTTACCCAATTGGCATTTTGAGCGAGTCTTGTCTTGTCTACCTAGCCACGGAGCCTGCTGGCGTCATC AGTCCGCTGGCAAAGTATGCTCTCTACGCTGTGCTCGTGCTGTACGTTCCGGGTGAGTCTTGGGCAAGAACAAAG CATGGCGCCTTGGCTCGACGATTGGAGCTGACGCATGCCACTAGGCTCCTACGTCCTGTACTCGCACATGATGAA GCAGAGGCGAAAGGTCATGGGCTCGGCGAGACCAAAGGACCAAAAGGCAAGGCAATGA |