Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|6831
Gene name
LocationContig_739:3562..4595
Strand-
Gene length (bp)1033
Transcript length (bp)978
Coding sequence length (bp)978
Protein length (aa) 326

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00505 HMG_box HMG (high mobility group) box 4.9E-08 228 294
PF09011 HMG_box_2 HMG-box domain 3.7E-05 228 292

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P26586|HMGL_TRYBR High mobility group protein homolog TDP-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1 208 294 4.0E-06

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
HMG

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup3032
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6831 (this protein)
Ophiocordyceps australis map64 (Brazil) OphauB2|5482
Ophiocordyceps camponoti-floridani Ophcf2|04670
Ophiocordyceps camponoti-rufipedis Ophun1|5732
Ophiocordyceps kimflemingae Ophio5|3300
Ophiocordyceps subramaniannii Hirsu2|5235

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|6831
MLVSIGRIAARRVLAPASSKLLVTTALHPRIVDLSVRGIAASALVQSPAAKSTASSSTKAKTSARPKAKSTAKSK
VNKAKAAKAKPKPAKPKPAKPIAKKKLVAKHLTPEQKQRRAIRFLRHIALTREMPKPLPRSSWNVFIGKKLHKGS
VLTRDMAGLSTTFATLPEDTKKELENQATRNRHANVEKMKAWVQEHPPEAIYLANLARRRLDRKFKRAYSQIQDP
RLPARPSSAFIHYYIKRRGDGTDLPSDGVINMSRQVAVEWRALAPSEKKKYEAMNQEDSERFRREFQALKPKMEE
YIQAQKEVFRTRHNKSSKQAARQRK*
Coding >OphauG2|6831
ATGCTCGTCTCAATTGGCCGCATCGCCGCACGCCGAGTGCTGGCCCCAGCGTCATCCAAGCTCCTCGTCACCACG
GCATTGCATCCCCGCATCGTGGACCTGAGTGTCCGCGGCATTGCAGCCTCGGCCTTGGTGCAGTCTCCAGCCGCA
AAGAGCACTGCCTCTTCGTCCACCAAGGCCAAGACTAGCGCCAGGCCAAAGGCCAAATCAACGGCCAAATCAAAG
GTCAACAAGGCCAAGGCAGCAAAAGCAAAGCCCAAGCCAGCAAAGCCCAAGCCAGCAAAGCCCATTGCCAAGAAG
AAGCTCGTAGCCAAGCACCTGACGCCCGAACAGAAGCAGAGGCGCGCCATCCGCTTCCTCCGACATATTGCCTTG
ACACGAGAAATGCCCAAGCCCCTGCCCAGGTCGTCGTGGAACGTTTTTATTGGCAAGAAACTGCACAAGGGATCC
GTTTTGACAAGAGACATGGCCGGGCTCTCAACCACGTTTGCTACACTCCCAGAGGACACAAAAAAGGAGCTTGAG
AATCAAGCCACGCGCAACAGACATGCCAATGTTGAAAAGATGAAGGCCTGGGTCCAGGAGCACCCGCCCGAAGCT
ATTTATCTGGCCAATCTTGCCCGCCGCCGCCTAGACCGTAAGTTCAAGAGGGCCTATAGTCAAATTCAAGACCCG
CGCCTCCCCGCCCGACCCTCTAGCGCCTTTATCCATTACTACATCAAGCGCCGTGGAGATGGTACCGACTTGCCT
AGTGACGGCGTCATCAATATGTCGCGCCAGGTGGCAGTCGAATGGAGGGCGCTTGCTCCGAGTGAAAAGAAAAAG
TATGAGGCCATGAATCAAGAGGATTCGGAGCGCTTTCGCCGCGAGTTCCAGGCCCTCAAGCCCAAGATGGAGGAA
TACATCCAGGCACAAAAGGAAGTCTTCAGAACCAGGCACAACAAATCCTCCAAGCAAGCTGCAAGGCAGCGAAAA
TAG
Transcript >OphauG2|6831
ATGCTCGTCTCAATTGGCCGCATCGCCGCACGCCGAGTGCTGGCCCCAGCGTCATCCAAGCTCCTCGTCACCACG
GCATTGCATCCCCGCATCGTGGACCTGAGTGTCCGCGGCATTGCAGCCTCGGCCTTGGTGCAGTCTCCAGCCGCA
AAGAGCACTGCCTCTTCGTCCACCAAGGCCAAGACTAGCGCCAGGCCAAAGGCCAAATCAACGGCCAAATCAAAG
GTCAACAAGGCCAAGGCAGCAAAAGCAAAGCCCAAGCCAGCAAAGCCCAAGCCAGCAAAGCCCATTGCCAAGAAG
AAGCTCGTAGCCAAGCACCTGACGCCCGAACAGAAGCAGAGGCGCGCCATCCGCTTCCTCCGACATATTGCCTTG
ACACGAGAAATGCCCAAGCCCCTGCCCAGGTCGTCGTGGAACGTTTTTATTGGCAAGAAACTGCACAAGGGATCC
GTTTTGACAAGAGACATGGCCGGGCTCTCAACCACGTTTGCTACACTCCCAGAGGACACAAAAAAGGAGCTTGAG
AATCAAGCCACGCGCAACAGACATGCCAATGTTGAAAAGATGAAGGCCTGGGTCCAGGAGCACCCGCCCGAAGCT
ATTTATCTGGCCAATCTTGCCCGCCGCCGCCTAGACCGTAAGTTCAAGAGGGCCTATAGTCAAATTCAAGACCCG
CGCCTCCCCGCCCGACCCTCTAGCGCCTTTATCCATTACTACATCAAGCGCCGTGGAGATGGTACCGACTTGCCT
AGTGACGGCGTCATCAATATGTCGCGCCAGGTGGCAGTCGAATGGAGGGCGCTTGCTCCGAGTGAAAAGAAAAAG
TATGAGGCCATGAATCAAGAGGATTCGGAGCGCTTTCGCCGCGAGTTCCAGGCCCTCAAGCCCAAGATGGAGGAA
TACATCCAGGCACAAAAGGAAGTCTTCAGAACCAGGCACAACAAATCCTCCAAGCAAGCTGCAAGGCAGCGAAAA
TAG
Gene >OphauG2|6831
ATGCTCGTCTCAATTGGCCGCATCGCCGCACGCCGAGTGCTGGCCCCAGCGTCATCCAAGCTCCTCGTCACCACG
GCATTGCATCCCCGCATCGTGGACCTGAGTGTCCGCGGCATTGCAGCCTCGGCCTTGGTGCAGTCTCCAGCCGCA
AAGAGCACTGCCTCTTCGTCCACCAAGGCCAAGACTAGCGCCAGGCCAAAGGCCAAATCAACGGCCAAATCAAAG
GTCAACAAGGCCAAGGCAGCAAAAGCAAAGCCCAAGCCAGCAAAGCCCAAGCCAGCAAAGCCCATTGCCAAGAAG
AAGCTCGTAGCCAAGCACCTGACGCCCGAACAGAAGCAGAGGCGCGCCATCCGCTTCCTCCGACATATTGCCTTG
ACACGAGAAATGCCCAAGCCCCTGCCCAGGTCGTCGTGGAACGTTTTTATTGGCAAGAAACTGCACAAGGGATCC
GTTTTGACAAGAGACATGGCCGGGCTCTCAACCACGTTTGCTACACTCCCAGAGGACACAAAAAAGGTGTGTGCT
ATTCAACTTGGTTTACCCCTCGACCCAGCTGACTTGGGCCCTGTAGGAGCTTGAGAATCAAGCCACGCGCAACAG
ACATGCCAATGTTGAAAAGATGAAGGCCTGGGTCCAGGAGCACCCGCCCGAAGCTATTTATCTGGCCAATCTTGC
CCGCCGCCGCCTAGACCGTAAGTTCAAGAGGGCCTATAGTCAAATTCAAGACCCGCGCCTCCCCGCCCGACCCTC
TAGCGCCTTTATCCATTACTACATCAAGCGCCGTGGAGATGGTACCGACTTGCCTAGTGACGGCGTCATCAATAT
GTCGCGCCAGGTGGCAGTCGAATGGAGGGCGCTTGCTCCGAGTGAAAAGAAAAAGTATGAGGCCATGAATCAAGA
GGATTCGGAGCGCTTTCGCCGCGAGTTCCAGGCCCTCAAGCCCAAGATGGAGGAATACATCCAGGCACAAAAGGA
AGTCTTCAGAACCAGGCACAACAAATCCTCCAAGCAAGCTGCAAGGCAGCGAAAATAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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