Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|6818
Gene name
LocationContig_735:5401..5626
Strand-
Gene length (bp)225
Transcript length (bp)225
Coding sequence length (bp)225
Protein length (aa) 75

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-04 51 72

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003676 nucleic acid binding No
GO:0097159 organic cyclic compound binding No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup11786
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6818 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|6818
MSATVVDNKTSEAAVNDLSSALRNSSIISPANDKAAANEAASASAAEGRRLYIGNLAYATKEEELKDFFKGYLV*
Coding >OphauG2|6818
ATGTCTGCTACAGTTGTGGATAACAAGACGTCCGAGGCCGCCGTCAATGACCTCTCATCTGCTCTGCGCAACTCG
TCAATCATCTCGCCCGCCAACGACAAGGCCGCCGCCAATGAAGCTGCTTCGGCCAGCGCGGCCGAGGGCCGTCGC
CTCTACATTGGCAACTTGGCCTATGCGACAAAGGAGGAAGAATTGAAGGACTTTTTCAAGGGTTACCTTGTGTGA
Transcript >OphauG2|6818
ATGTCTGCTACAGTTGTGGATAACAAGACGTCCGAGGCCGCCGTCAATGACCTCTCATCTGCTCTGCGCAACTCG
TCAATCATCTCGCCCGCCAACGACAAGGCCGCCGCCAATGAAGCTGCTTCGGCCAGCGCGGCCGAGGGCCGTCGC
CTCTACATTGGCAACTTGGCCTATGCGACAAAGGAGGAAGAATTGAAGGACTTTTTCAAGGGTTACCTTGTGTGA
Gene >OphauG2|6818
ATGTCTGCTACAGTTGTGGATAACAAGACGTCCGAGGCCGCCGTCAATGACCTCTCATCTGCTCTGCGCAACTCG
TCAATCATCTCGCCCGCCAACGACAAGGCCGCCGCCAATGAAGCTGCTTCGGCCAGCGCGGCCGAGGGCCGTCGC
CTCTACATTGGCAACTTGGCCTATGCGACAAAGGAGGAAGAATTGAAGGACTTTTTCAAGGGTTACCTTGTGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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