© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|6806 |
| Gene name | |
| Location | Contig_731:5395..6487 |
| Strand | + |
| Gene length (bp) | 1092 |
| Transcript length (bp) | 1092 |
| Coding sequence length (bp) | 1092 |
| Protein length (aa) | 364 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-16 | 211 | 280 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10355|YDB2_SCHPO | Uncharacterized RNA-binding protein C22E12.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22E12.02 PE=3 SV=1 | 184 | 298 | 1.0E-33 |
| sp|A2VDB3|RBM42_XENLA | RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1 | 189 | 301 | 2.0E-30 |
| sp|Q6DRG1|RBM42_DANRE | RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2 | 189 | 301 | 3.0E-30 |
| sp|Q66KL9|RBM42_XENTR | RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1 | 189 | 301 | 6.0E-29 |
| sp|Q0P5L0|RBM42_BOVIN | RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1 | 189 | 284 | 1.0E-28 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10355|YDB2_SCHPO | Uncharacterized RNA-binding protein C22E12.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22E12.02 PE=3 SV=1 | 184 | 298 | 1.0E-33 |
| sp|A2VDB3|RBM42_XENLA | RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1 | 189 | 301 | 2.0E-30 |
| sp|Q6DRG1|RBM42_DANRE | RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2 | 189 | 301 | 3.0E-30 |
| sp|Q66KL9|RBM42_XENTR | RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1 | 189 | 301 | 6.0E-29 |
| sp|Q0P5L0|RBM42_BOVIN | RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1 | 189 | 284 | 1.0E-28 |
| sp|Q6AXT7|RBM42_RAT | RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1 | 189 | 284 | 1.0E-28 |
| sp|Q91V81|RBM42_MOUSE | RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1 | 189 | 284 | 1.0E-28 |
| sp|Q9BTD8|RBM42_HUMAN | RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1 | 189 | 284 | 2.0E-28 |
| sp|Q9SYG4|UBP1A_ARATH | Oligouridylate-binding protein 1A OS=Arabidopsis thaliana GN=UBP1A PE=1 SV=1 | 207 | 280 | 5.0E-13 |
| sp|Q9LJH8|UBP1C_ARATH | Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1 | 207 | 280 | 6.0E-13 |
| sp|Q93W34|RP45C_ARATH | Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana GN=RBP45C PE=2 SV=1 | 206 | 280 | 1.0E-11 |
| sp|Q9FPJ8|RB45A_ARATH | Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1 | 206 | 285 | 1.0E-11 |
| sp|Q5RF83|CIRBP_PONAB | Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1 | 210 | 285 | 2.0E-11 |
| sp|Q14011|CIRBP_HUMAN | Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1 | 210 | 285 | 2.0E-11 |
| sp|P10979|GRPA_MAIZE | Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1 | 210 | 285 | 2.0E-11 |
| sp|Q9LIS2|RBG4_ARATH | Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1 | 210 | 285 | 3.0E-11 |
| sp|Q28IQ9|CIRBP_XENTR | Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1 | 210 | 285 | 3.0E-11 |
| sp|Q03878|GRP1_DAUCA | Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1 | 210 | 285 | 3.0E-11 |
| sp|Q9SAB3|RB45B_ARATH | Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1 | 211 | 326 | 5.0E-11 |
| sp|Q99070|GRP2_SORBI | Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1 | 210 | 285 | 6.0E-11 |
| sp|Q9M427|UBP1_NICPL | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia GN=UBP1 PE=2 SV=1 | 207 | 280 | 6.0E-11 |
| sp|P60825|CIRBP_RAT | Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1 | 210 | 285 | 6.0E-11 |
| sp|P60824|CIRBP_MOUSE | Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1 | 210 | 285 | 6.0E-11 |
| sp|P60826|CIRBP_CRIGR | Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1 | 210 | 285 | 6.0E-11 |
| sp|Q9LQI9|UBP1B_ARATH | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana GN=UBP1B PE=1 SV=1 | 207 | 280 | 6.0E-11 |
| sp|O93235|CIRBA_XENLA | Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a PE=1 SV=2 | 210 | 285 | 7.0E-11 |
| sp|Q9DED4|CIRBB_XENLA | Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1 | 210 | 285 | 8.0E-11 |
| sp|Q9PTX2|CIRBP_LITCT | Cold-inducible RNA-binding protein OS=Lithobates catesbeiana GN=cirbp PE=2 SV=1 | 210 | 285 | 9.0E-11 |
| sp|Q03251|RBG8_ARATH | Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8 PE=1 SV=1 | 210 | 285 | 9.0E-11 |
| sp|F4I3B3|RB47A_ARATH | Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1 | 209 | 285 | 1.0E-10 |
| sp|Q0WW84|RB47B_ARATH | Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1 | 209 | 293 | 1.0E-10 |
| sp|Q9LEB4|RBP45_NICPL | Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1 | 205 | 285 | 2.0E-10 |
| sp|Q7ZWA3|RBMX_DANRE | RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2 SV=1 | 210 | 285 | 2.0E-10 |
| sp|Q05966|GRP10_BRANA | Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1 | 210 | 285 | 3.0E-10 |
| sp|Q6IRQ4|RBMX_XENLA | RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx PE=2 SV=1 | 210 | 285 | 6.0E-10 |
| sp|P52912|TIA1_MOUSE | Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1 | 208 | 275 | 1.0E-09 |
| sp|P49310|GRP1_SINAL | Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1 | 210 | 285 | 1.0E-09 |
| sp|Q43472|GRP_HORVU | Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1 | 210 | 285 | 1.0E-09 |
| sp|P31483|TIA1_HUMAN | Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3 | 208 | 275 | 1.0E-09 |
| sp|Q9LEB3|RBP47_NICPL | Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1 | 207 | 285 | 2.0E-09 |
| sp|Q9SVM8|RBG2_ARATH | Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1 | 210 | 286 | 2.0E-09 |
| sp|Q9C652|RBP1_ARATH | RNA-binding protein 1 OS=Arabidopsis thaliana GN=RBP1 PE=2 SV=1 | 205 | 285 | 3.0E-09 |
| sp|P0C8Z4|RMXL3_PANTR | RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes GN=RBMXL3 PE=3 SV=1 | 210 | 282 | 3.0E-09 |
| sp|P38760|MIP6_YEAST | RNA-binding protein MIP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIP6 PE=1 SV=1 | 211 | 271 | 3.0E-09 |
| sp|Q8RWN5|RZ1C_ARATH | Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1 | 210 | 289 | 3.0E-09 |
| sp|Q9H0Z9|RBM38_HUMAN | RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2 | 205 | 298 | 4.0E-09 |
| sp|Q8VXZ9|R47BP_ARATH | Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1 | 206 | 285 | 4.0E-09 |
| sp|Q76LC6|RBM24_DANRE | RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1 | 205 | 300 | 5.0E-09 |
| sp|Q9LKA4|UBA2C_ARATH | UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1 | 205 | 294 | 6.0E-09 |
| sp|Q96E39|RMXL1_HUMAN | RNA binding motif protein, X-linked-like-1 OS=Homo sapiens GN=RBMXL1 PE=1 SV=1 | 210 | 285 | 6.0E-09 |
| sp|Q7T3I7|RBM38_XENLA | RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2 | 202 | 298 | 7.0E-09 |
| sp|Q03250|RBG7_ARATH | Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1 | 210 | 285 | 7.0E-09 |
| sp|Q01085|TIAR_HUMAN | Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1 | 207 | 275 | 7.0E-09 |
| sp|Q8N7X1|RMXL3_HUMAN | RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens GN=RBMXL3 PE=2 SV=2 | 210 | 282 | 8.0E-09 |
| sp|Q5ZJX4|RBM38_CHICK | RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1 | 202 | 298 | 8.0E-09 |
| sp|Q9SX79|RB47C_ARATH | Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1 | 197 | 272 | 8.0E-09 |
| sp|Q9I8B3|RB24B_XENLA | RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1 | 205 | 300 | 9.0E-09 |
| sp|Q13151|ROA0_HUMAN | Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1 | 210 | 285 | 9.0E-09 |
| sp|P70318|TIAR_MOUSE | Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=1 SV=1 | 207 | 275 | 9.0E-09 |
| sp|Q9SX80|R47CP_ARATH | Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV=1 | 197 | 272 | 9.0E-09 |
| sp|P49311|GRP2_SINAL | Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1 | 210 | 285 | 9.0E-09 |
| sp|Q6GQD3|RB24A_XENLA | RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1 | 205 | 300 | 1.0E-08 |
| sp|P32831|NGR1_YEAST | Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2 | 211 | 285 | 1.0E-08 |
| sp|Q6P8A7|RBM24_XENTR | RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1 | 205 | 300 | 1.0E-08 |
| sp|Q4V898|RBMX_RAT | RNA-binding motif protein, X chromosome OS=Rattus norvegicus GN=Rbmx PE=1 SV=1 | 210 | 285 | 1.0E-08 |
| sp|A5A6M3|RBMX_PANTR | RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX PE=2 SV=1 | 210 | 285 | 1.0E-08 |
| sp|P38159|RBMX_HUMAN | RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX PE=1 SV=3 | 210 | 285 | 1.0E-08 |
| sp|Q9WV02|RBMX_MOUSE | RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx PE=1 SV=1 | 210 | 285 | 1.0E-08 |
| sp|Q4R7F0|RBMX_MACFA | RNA-binding motif protein, X chromosome OS=Macaca fascicularis GN=RBMX PE=2 SV=1 | 210 | 285 | 1.0E-08 |
| sp|Q91VM5|RMXL1_MOUSE | RNA binding motif protein, X-linked-like-1 OS=Mus musculus GN=Rbmxl1 PE=2 SV=1 | 210 | 285 | 2.0E-08 |
| sp|Q9BX46|RBM24_HUMAN | RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1 | 205 | 300 | 2.0E-08 |
| sp|Q9CX86|ROA0_MOUSE | Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus GN=Hnrnpa0 PE=1 SV=1 | 210 | 285 | 2.0E-08 |
| sp|D3Z4I3|RBM24_MOUSE | RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1 | 205 | 300 | 2.0E-08 |
| sp|Q6DIV4|RBM38_XENTR | RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1 | 202 | 289 | 2.0E-08 |
| sp|P51991|ROA3_HUMAN | Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2 | 205 | 262 | 2.0E-08 |
| sp|Q6URK4|ROA3_RAT | Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1 | 205 | 262 | 2.0E-08 |
| sp|Q8BG05|ROA3_MOUSE | Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus GN=Hnrnpa3 PE=1 SV=1 | 205 | 262 | 2.0E-08 |
| sp|Q9H0L4|CSTFT_HUMAN | Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1 | 204 | 288 | 3.0E-08 |
| sp|Q5ZMA3|RBM24_CHICK | RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2 | 205 | 271 | 3.0E-08 |
| sp|Q9LIN3|RZ1A_ARATH | Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1 | 202 | 309 | 3.0E-08 |
| sp|Q8C7E9|CSTFT_MOUSE | Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2 | 211 | 288 | 3.0E-08 |
| sp|Q5RDA3|CSTF2_PONAB | Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2 SV=1 | 211 | 312 | 5.0E-08 |
| sp|P33240|CSTF2_HUMAN | Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1 | 211 | 312 | 5.0E-08 |
| sp|Q8HXM1|CSTF2_BOVIN | Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2 SV=1 | 211 | 312 | 5.0E-08 |
| sp|Q32P51|RA1L2_HUMAN | Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2 | 205 | 262 | 5.0E-08 |
| sp|P84586|RMXRL_RAT | RNA-binding motif protein, X chromosome retrogene-like OS=Rattus norvegicus GN=Rbmxrtl PE=1 SV=1 | 210 | 285 | 5.0E-08 |
| sp|Q04836|CP31A_ARATH | 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1 | 204 | 285 | 5.0E-08 |
| sp|D4AE41|RMXL1_RAT | RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus GN=Rbmxl1 PE=3 SV=1 | 210 | 285 | 5.0E-08 |
| sp|Q05AT9|U1SBP_XENLA | U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus laevis GN=snrnp35 PE=2 SV=1 | 205 | 282 | 6.0E-08 |
| sp|Q13310|PABP4_HUMAN | Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1 | 211 | 290 | 6.0E-08 |
| sp|Q8BIQ5|CSTF2_MOUSE | Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2 | 211 | 312 | 6.0E-08 |
| sp|P51968|RO31_XENLA | Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1 | 205 | 258 | 6.0E-08 |
| sp|Q1LZH0|U1SBP_BOVIN | U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus GN=SNRNP35 PE=2 SV=1 | 209 | 282 | 7.0E-08 |
| sp|Q62176|RBM38_MOUSE | RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2 | 205 | 298 | 7.0E-08 |
| sp|Q9FNR1|RBG3_ARATH | Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1 | 210 | 286 | 7.0E-08 |
| sp|P04256|ROA1_RAT | Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3 | 205 | 262 | 7.0E-08 |
| sp|A5A6H4|ROA1_PANTR | Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1 | 205 | 262 | 8.0E-08 |
| sp|P49312|ROA1_MOUSE | Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2 | 205 | 262 | 8.0E-08 |
| sp|P09867|ROA1_BOVIN | Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2 | 205 | 262 | 8.0E-08 |
| sp|P51992|RO32_XENLA | Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1 | 205 | 262 | 8.0E-08 |
| sp|P09651|ROA1_HUMAN | Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5 | 205 | 262 | 8.0E-08 |
| sp|P17130|ROA1_XENLA | Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus laevis GN=hnrnpa1 PE=2 SV=1 | 205 | 262 | 9.0E-08 |
| sp|O22173|PABP4_ARATH | Polyadenylate-binding protein 4 OS=Arabidopsis thaliana GN=PAB4 PE=1 SV=1 | 209 | 285 | 9.0E-08 |
| sp|P0DJD4|RBY1C_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo sapiens GN=RBMY1C PE=1 SV=1 | 210 | 285 | 9.0E-08 |
| sp|Q00539|NAM8_YEAST | Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM8 PE=1 SV=2 | 207 | 282 | 9.0E-08 |
| sp|P0DJD3|RBY1A_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo sapiens GN=RBMY1A1 PE=1 SV=1 | 210 | 285 | 1.0E-07 |
| sp|A6NEQ0|RBY1E_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo sapiens GN=RBMY1E PE=2 SV=1 | 210 | 285 | 1.0E-07 |
| sp|P0C7P1|RBY1D_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo sapiens GN=RBMY1D PE=2 SV=1 | 210 | 285 | 1.0E-07 |
| sp|A6NDE4|RBY1B_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo sapiens GN=RBMY1B PE=2 SV=2 | 210 | 285 | 1.0E-07 |
| sp|Q15427|SF3B4_HUMAN | Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1 | 211 | 285 | 1.0E-07 |
| sp|Q29RT0|RBMX_BOVIN | RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2 SV=1 | 210 | 285 | 1.0E-07 |
| sp|Q54BM2|PAP1A_DICDI | Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1 | 209 | 285 | 1.0E-07 |
| sp|Q28521|ROA1_MACMU | Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3 | 205 | 261 | 1.0E-07 |
| sp|P0CP46|PABP_CRYNJ | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1 | 165 | 285 | 1.0E-07 |
| sp|P0CP47|PABP_CRYNB | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAB1 PE=3 SV=1 | 165 | 285 | 1.0E-07 |
| sp|Q5U1W5|U1SBP_RAT | U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus GN=Snrnp35 PE=2 SV=1 | 209 | 282 | 1.0E-07 |
| sp|Q9SIX3|RBG1_ARATH | Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis thaliana GN=RBG1 PE=2 SV=2 | 206 | 280 | 1.0E-07 |
| sp|Q6AYL5|SF3B4_RAT | Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1 | 211 | 285 | 1.0E-07 |
| sp|Q8QZY9|SF3B4_MOUSE | Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=1 SV=1 | 211 | 285 | 1.0E-07 |
| sp|P21522|ROA1_SCHAM | Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1 | 205 | 260 | 2.0E-07 |
| sp|O35698|RBY1A_MOUSE | RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus musculus GN=Rbmy1a1 PE=1 SV=2 | 210 | 285 | 2.0E-07 |
| sp|P07909|ROA1_DROME | Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=2 SV=1 | 205 | 258 | 2.0E-07 |
| sp|O75526|RMXL2_HUMAN | RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3 | 210 | 285 | 2.0E-07 |
| sp|Q60990|RBY1B_MOUSE | RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus musculus GN=Rbmy1b PE=2 SV=3 | 210 | 285 | 2.0E-07 |
| sp|Q9VVE5|MSIR6_DROME | RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3 | 210 | 284 | 2.0E-07 |
| sp|O60176|YG41_SCHPO | Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.01c PE=1 SV=2 | 207 | 285 | 2.0E-07 |
| sp|P32588|PUB1_YEAST | Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUB1 PE=1 SV=4 | 209 | 285 | 3.0E-07 |
| sp|Q2U256|PPIL4_ASPOR | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1 | 203 | 282 | 3.0E-07 |
| sp|Q9M1S3|ARP1_ARATH | Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1 | 205 | 273 | 3.0E-07 |
| sp|Q9D384|U1SBP_MOUSE | U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus GN=Snrnp35 PE=2 SV=1 | 209 | 282 | 3.0E-07 |
| sp|Q13310|PABP4_HUMAN | Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1 | 184 | 282 | 4.0E-07 |
| sp|Q9H361|PABP3_HUMAN | Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2 | 209 | 282 | 4.0E-07 |
| sp|Q15415|RBY1F_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member F/J OS=Homo sapiens GN=RBMY1F PE=1 SV=2 | 210 | 285 | 5.0E-07 |
| sp|P16914|ELAV_DROME | Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1 | 211 | 272 | 5.0E-07 |
| sp|Q4WAQ9|PPIL4_ASPFU | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cyp6 PE=3 SV=1 | 203 | 280 | 6.0E-07 |
| sp|P23241|ELAV_DROVI | Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1 | 211 | 272 | 6.0E-07 |
| sp|Q6BI95|PABP_DEBHA | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2 | 165 | 282 | 8.0E-07 |
| sp|P42731|PABP2_ARATH | Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 | 211 | 272 | 8.0E-07 |
| sp|O13829|RU17_SCHPO | U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp101 PE=1 SV=1 | 204 | 282 | 1.0E-06 |
| sp|Q4R813|RMXL2_MACFA | RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1 | 210 | 285 | 1.0E-06 |
| sp|P39697|RT19_ARATH | 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2 | 210 | 285 | 1.0E-06 |
| sp|Q5RC80|RBM39_PONAB | RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1 | 209 | 282 | 1.0E-06 |
| sp|P27476|NSR1_YEAST | Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1 SV=1 | 211 | 280 | 1.0E-06 |
| sp|Q8W034|RNP1_ARATH | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1 | 205 | 285 | 1.0E-06 |
| sp|Q8VH51|RBM39_MOUSE | RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2 | 209 | 282 | 1.0E-06 |
| sp|Q14498|RBM39_HUMAN | RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2 | 209 | 282 | 2.0E-06 |
| sp|Q86U06|RBM23_HUMAN | Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1 | 209 | 282 | 2.0E-06 |
| sp|O89086|RBM3_MOUSE | RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1 | 210 | 285 | 2.0E-06 |
| sp|P28644|ROC1_SPIOL | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | 206 | 285 | 2.0E-06 |
| sp|A4QUF0|PABP_MAGO7 | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=PAB1 PE=3 SV=1 | 203 | 285 | 2.0E-06 |
| sp|Q43349|CP29A_ARATH | 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP29A PE=2 SV=2 | 210 | 285 | 3.0E-06 |
| sp|Q08937|ROC2_NICSY | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 192 | 282 | 3.0E-06 |
| sp|O22703|RZ1B_ARATH | Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1 | 210 | 301 | 3.0E-06 |
| sp|Q16560|U1SBP_HUMAN | U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens GN=SNRNP35 PE=1 SV=1 | 209 | 282 | 3.0E-06 |
| sp|P42731|PABP2_ARATH | Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 | 211 | 285 | 4.0E-06 |
| sp|Q9ZUU4|CP29B_ARATH | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 | 207 | 282 | 4.0E-06 |
| sp|O60506|HNRPQ_HUMAN | Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2 | 165 | 311 | 4.0E-06 |
| sp|P82277|RRP2_SPIOL | 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1 | 210 | 285 | 5.0E-06 |
| sp|P98179|RBM3_HUMAN | RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1 | 210 | 285 | 5.0E-06 |
| sp|Q99069|GRP1_SORBI | Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1 | 224 | 285 | 5.0E-06 |
| sp|Q9CZ96|ZCRB1_MOUSE | Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus GN=Zcrb1 PE=1 SV=1 | 206 | 300 | 5.0E-06 |
| sp|W8E7I1|RBM3_CAPHI | RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2 | 210 | 285 | 5.0E-06 |
| sp|Q499V6|ZCRB1_RAT | Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1 | 206 | 300 | 7.0E-06 |
| sp|Q925G0|RBM3_RAT | RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2 | 210 | 285 | 7.0E-06 |
| sp|Q4WJT7|MRD1_ASPFU | Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mrd1 PE=3 SV=1 | 210 | 276 | 9.0E-06 |
| sp|Q7TP47|HNRPQ_RAT | Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1 | 165 | 311 | 9.0E-06 |
| sp|Q9FXA2|PABP8_ARATH | Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1 | 202 | 290 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|6806 MAYAQPSASLPARPPLPHSSPSFQPASAHAQQQQQAAYGPTGALHSQYAVTNAPSSYRSHGPSSYSAVSVSSLSS HHANRSQVASSQHSAFSSHASGYGHSAYATNHPSYPIHPAANALDSSEAAQIAEWQSAYNSASAHTMTPLTAQVS KDGKPLLPPGVESRFSDHTSYTSATAASDTFDRKKTVSRQGGGKKWTDDTLLEWDPSHLRLFVGNLAGETTDESL LKAFSRWRSVQKARVIRDKRTTKSKGYGFVSFSDADDFFQAAKEMNGKYIQSHPVVVKKANTEIKIANIKDKSKV GKNKKNKKDTATPSTSGIKNRSGNTHGAPTGANRGFESSMGPIGASYVMKPGQRTRNGLRLLG* |
| Coding | >OphauG2|6806 ATGGCCTACGCACAGCCTTCTGCTTCGCTCCCTGCTCGACCCCCGCTACCACACAGCAGTCCCAGCTTCCAGCCT GCGTCGGCTCATGCGCAACAACAACAACAAGCAGCCTATGGACCTACCGGCGCTTTGCACAGTCAGTACGCTGTC ACCAACGCTCCGTCTAGTTATCGCTCCCATGGCCCATCATCATACTCGGCCGTCAGCGTTTCCTCTTTGTCGTCG CATCACGCCAATCGAAGCCAAGTCGCGTCATCTCAGCACTCAGCCTTTTCCTCTCACGCCTCAGGATACGGCCAC TCTGCCTACGCCACAAATCATCCCTCATATCCCATCCACCCCGCTGCTAATGCCCTCGACTCAAGCGAGGCCGCG CAAATCGCCGAATGGCAAAGCGCCTACAACTCGGCCTCTGCACATACCATGACCCCCCTCACGGCTCAGGTATCC AAGGATGGAAAGCCTCTTTTGCCACCCGGCGTTGAGTCACGCTTCTCTGACCACACTTCCTATACTTCCGCCACG GCCGCTTCAGACACATTTGACCGCAAGAAAACCGTGTCAAGACAGGGAGGCGGAAAGAAATGGACCGACGACACT CTTCTAGAATGGGATCCCTCTCACCTGCGCCTGTTTGTTGGCAATCTCGCCGGTGAAACGACGGATGAGTCGCTG CTCAAGGCCTTTTCGCGCTGGCGCTCAGTCCAAAAGGCTCGTGTTATTCGCGACAAGCGCACAACAAAGTCCAAG GGCTATGGCTTTGTCAGCTTCAGTGATGCCGACGACTTCTTCCAGGCGGCCAAAGAAATGAATGGCAAATACATT CAAAGTCATCCTGTCGTCGTCAAAAAAGCAAACACGGAAATCAAAATTGCCAACATCAAAGACAAGTCAAAAGTT GGCAAGAACAAGAAGAACAAGAAGGACACAGCCACTCCTTCAACCAGCGGGATAAAGAATCGGTCAGGAAACACA CACGGAGCTCCCACTGGAGCGAATAGAGGCTTTGAGTCTAGTATGGGGCCCATTGGCGCCTCGTACGTCATGAAG CCAGGACAGAGGACAAGGAATGGACTGAGACTTCTTGGTTGA |
| Transcript | >OphauG2|6806 ATGGCCTACGCACAGCCTTCTGCTTCGCTCCCTGCTCGACCCCCGCTACCACACAGCAGTCCCAGCTTCCAGCCT GCGTCGGCTCATGCGCAACAACAACAACAAGCAGCCTATGGACCTACCGGCGCTTTGCACAGTCAGTACGCTGTC ACCAACGCTCCGTCTAGTTATCGCTCCCATGGCCCATCATCATACTCGGCCGTCAGCGTTTCCTCTTTGTCGTCG CATCACGCCAATCGAAGCCAAGTCGCGTCATCTCAGCACTCAGCCTTTTCCTCTCACGCCTCAGGATACGGCCAC TCTGCCTACGCCACAAATCATCCCTCATATCCCATCCACCCCGCTGCTAATGCCCTCGACTCAAGCGAGGCCGCG CAAATCGCCGAATGGCAAAGCGCCTACAACTCGGCCTCTGCACATACCATGACCCCCCTCACGGCTCAGGTATCC AAGGATGGAAAGCCTCTTTTGCCACCCGGCGTTGAGTCACGCTTCTCTGACCACACTTCCTATACTTCCGCCACG GCCGCTTCAGACACATTTGACCGCAAGAAAACCGTGTCAAGACAGGGAGGCGGAAAGAAATGGACCGACGACACT CTTCTAGAATGGGATCCCTCTCACCTGCGCCTGTTTGTTGGCAATCTCGCCGGTGAAACGACGGATGAGTCGCTG CTCAAGGCCTTTTCGCGCTGGCGCTCAGTCCAAAAGGCTCGTGTTATTCGCGACAAGCGCACAACAAAGTCCAAG GGCTATGGCTTTGTCAGCTTCAGTGATGCCGACGACTTCTTCCAGGCGGCCAAAGAAATGAATGGCAAATACATT CAAAGTCATCCTGTCGTCGTCAAAAAAGCAAACACGGAAATCAAAATTGCCAACATCAAAGACAAGTCAAAAGTT GGCAAGAACAAGAAGAACAAGAAGGACACAGCCACTCCTTCAACCAGCGGGATAAAGAATCGGTCAGGAAACACA CACGGAGCTCCCACTGGAGCGAATAGAGGCTTTGAGTCTAGTATGGGGCCCATTGGCGCCTCGTACGTCATGAAG CCAGGACAGAGGACAAGGAATGGACTGAGACTTCTTGGTTGA |
| Gene | >OphauG2|6806 ATGGCCTACGCACAGCCTTCTGCTTCGCTCCCTGCTCGACCCCCGCTACCACACAGCAGTCCCAGCTTCCAGCCT GCGTCGGCTCATGCGCAACAACAACAACAAGCAGCCTATGGACCTACCGGCGCTTTGCACAGTCAGTACGCTGTC ACCAACGCTCCGTCTAGTTATCGCTCCCATGGCCCATCATCATACTCGGCCGTCAGCGTTTCCTCTTTGTCGTCG CATCACGCCAATCGAAGCCAAGTCGCGTCATCTCAGCACTCAGCCTTTTCCTCTCACGCCTCAGGATACGGCCAC TCTGCCTACGCCACAAATCATCCCTCATATCCCATCCACCCCGCTGCTAATGCCCTCGACTCAAGCGAGGCCGCG CAAATCGCCGAATGGCAAAGCGCCTACAACTCGGCCTCTGCACATACCATGACCCCCCTCACGGCTCAGGTATCC AAGGATGGAAAGCCTCTTTTGCCACCCGGCGTTGAGTCACGCTTCTCTGACCACACTTCCTATACTTCCGCCACG GCCGCTTCAGACACATTTGACCGCAAGAAAACCGTGTCAAGACAGGGAGGCGGAAAGAAATGGACCGACGACACT CTTCTAGAATGGGATCCCTCTCACCTGCGCCTGTTTGTTGGCAATCTCGCCGGTGAAACGACGGATGAGTCGCTG CTCAAGGCCTTTTCGCGCTGGCGCTCAGTCCAAAAGGCTCGTGTTATTCGCGACAAGCGCACAACAAAGTCCAAG GGCTATGGCTTTGTCAGCTTCAGTGATGCCGACGACTTCTTCCAGGCGGCCAAAGAAATGAATGGCAAATACATT CAAAGTCATCCTGTCGTCGTCAAAAAAGCAAACACGGAAATCAAAATTGCCAACATCAAAGACAAGTCAAAAGTT GGCAAGAACAAGAAGAACAAGAAGGACACAGCCACTCCTTCAACCAGCGGGATAAAGAATCGGTCAGGAAACACA CACGGAGCTCCCACTGGAGCGAATAGAGGCTTTGAGTCTAGTATGGGGCCCATTGGCGCCTCGTACGTCATGAAG CCAGGACAGAGGACAAGGAATGGACTGAGACTTCTTGGTTGA |