Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|6787
Gene name
LocationContig_73:4869..5824
Strand+
Gene length (bp)955
Transcript length (bp)897
Coding sequence length (bp)897
Protein length (aa) 299

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04427 Brix Brix domain 1.7E-30 93 267

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q6BYD9|IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IMP4 PE=3 SV=2 1 298 2.0E-119
sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=IMP4 PE=3 SV=2 1 298 1.0E-118
sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1 1 298 3.0E-118
sp|P53941|IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1 SV=1 1 298 2.0E-117
sp|Q6FNN7|IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1 1 298 3.0E-114
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Swissprot ID Swissprot Description Start End E-value
sp|Q6BYD9|IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IMP4 PE=3 SV=2 1 298 2.0E-119
sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=IMP4 PE=3 SV=2 1 298 1.0E-118
sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1 1 298 3.0E-118
sp|P53941|IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1 SV=1 1 298 2.0E-117
sp|Q6FNN7|IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1 1 298 3.0E-114
sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp4 PE=3 SV=1 1 290 9.0E-99
sp|Q5R947|IMP4_PONAB U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2 12 298 5.0E-73
sp|Q5PQR5|IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1 12 298 5.0E-73
sp|Q8VHZ7|IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1 12 298 5.0E-73
sp|Q96G21|IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1 12 298 6.0E-73
sp|Q0VD01|IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1 12 298 6.0E-73
sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=3 SV=1 1 298 2.0E-71
sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1 37 298 2.0E-30
sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2 37 298 2.0E-30
sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2 37 298 4.0E-30
sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2 37 283 8.0E-30
sp|P54073|YUY1_CAEEL Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=3 SV=4 28 298 3.0E-29
sp|Q8AVP1|RPF1_XENLA Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1 37 298 5.0E-29
sp|Q6IQU6|RPF1_DANRE Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1 50 283 2.0E-26
sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1 67 287 2.0E-26
sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=3 SV=1 58 298 2.0E-23
sp|P38805|RPF1_YEAST Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1 1 298 1.0E-17
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GO

GO Term Description Terminal node
GO:0006364 rRNA processing Yes
GO:0019843 rRNA binding Yes
GO:0005488 binding No
GO:0003676 nucleic acid binding No
GO:1901363 heterocyclic compound binding No
GO:0044238 primary metabolic process No
GO:0016072 rRNA metabolic process No
GO:0008150 biological_process No
GO:0008152 metabolic process No
GO:0006396 RNA processing No
GO:0034660 ncRNA metabolic process No
GO:0034470 ncRNA processing No
GO:0009987 cellular process No
GO:0046483 heterocycle metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0003674 molecular_function No
GO:0097159 organic cyclic compound binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0003723 RNA binding No
GO:0044237 cellular metabolic process No
GO:0016070 RNA metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5226
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6787 (this protein)
Ophiocordyceps australis map64 (Brazil) OphauB2|7248
Ophiocordyceps camponoti-floridani Ophcf2|00707
Ophiocordyceps camponoti-rufipedis Ophun1|4765
Ophiocordyceps kimflemingae Ophio5|6190
Ophiocordyceps subramaniannii Hirsu2|4260

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|6787
MIRKQARQRRDYLYRRALLLRDAEISEKRAKLRASLASGKPLDASIANDKALRKDYQYDESAADGGITEQLDLDD
EYAQLSGIVDPRVLVSTSRDASARLSAFSKEIRLLLPTSMRMNRGNLILPDLVRSAKSAGLSDIVMLHEHRGTPT
ALTLSHFPHGPTLSFSLHNVVLRHDIPGSVRGTVSESYPHLIFDGFTTPLGNRVVKALKHIFPPREPITSKQKMG
SRVVTFKNIDDSIEVRHHVFVQTGYDSVELAEVGPRMTMKMFEIRGGTLENKDGDVEWHLSQYTRTGKKKSYL*
Coding >OphauG2|6787
ATGATTCGCAAGCAAGCCCGCCAAAGAAGAGATTATCTTTACCGCAGAGCCTTGCTCTTGCGCGACGCCGAAATC
AGCGAGAAGAGGGCCAAACTTCGAGCATCTCTGGCTTCGGGCAAACCTCTTGATGCCTCAATAGCCAACGACAAA
GCATTACGCAAAGATTATCAATACGATGAGTCGGCGGCAGATGGTGGCATCACAGAGCAACTCGACTTGGACGAT
GAATATGCGCAGCTGTCGGGCATTGTCGACCCCCGAGTCCTCGTGTCGACATCAAGAGATGCTTCGGCCAGGCTG
TCGGCCTTTTCGAAAGAAATTCGACTCCTGCTTCCAACGTCAATGCGCATGAATCGAGGAAATCTGATATTGCCA
GATCTAGTCAGATCAGCCAAATCTGCTGGGCTGTCTGACATTGTGATGCTGCACGAGCACCGCGGTACACCAACA
GCTCTGACCTTGTCGCATTTCCCTCACGGCCCGACCTTGTCTTTTTCGCTTCACAACGTGGTGCTGCGACATGAC
ATTCCGGGGAGTGTGCGTGGGACAGTCAGCGAGTCGTATCCTCATCTCATATTCGACGGCTTCACGACACCTTTG
GGCAACCGCGTCGTCAAGGCACTCAAGCATATATTCCCACCGAGAGAACCCATCACGAGCAAGCAAAAGATGGGC
AGCCGAGTGGTTACGTTTAAGAACATAGACGACAGTATCGAAGTACGGCATCACGTCTTTGTACAGACTGGGTAC
GACAGCGTCGAGCTCGCAGAGGTGGGGCCTAGGATGACGATGAAGATGTTTGAAATTCGCGGCGGCACGCTGGAA
AATAAGGACGGCGATGTTGAGTGGCACCTGTCGCAATACACCAGGACAGGCAAGAAGAAGAGCTATTTGTGA
Transcript >OphauG2|6787
ATGATTCGCAAGCAAGCCCGCCAAAGAAGAGATTATCTTTACCGCAGAGCCTTGCTCTTGCGCGACGCCGAAATC
AGCGAGAAGAGGGCCAAACTTCGAGCATCTCTGGCTTCGGGCAAACCTCTTGATGCCTCAATAGCCAACGACAAA
GCATTACGCAAAGATTATCAATACGATGAGTCGGCGGCAGATGGTGGCATCACAGAGCAACTCGACTTGGACGAT
GAATATGCGCAGCTGTCGGGCATTGTCGACCCCCGAGTCCTCGTGTCGACATCAAGAGATGCTTCGGCCAGGCTG
TCGGCCTTTTCGAAAGAAATTCGACTCCTGCTTCCAACGTCAATGCGCATGAATCGAGGAAATCTGATATTGCCA
GATCTAGTCAGATCAGCCAAATCTGCTGGGCTGTCTGACATTGTGATGCTGCACGAGCACCGCGGTACACCAACA
GCTCTGACCTTGTCGCATTTCCCTCACGGCCCGACCTTGTCTTTTTCGCTTCACAACGTGGTGCTGCGACATGAC
ATTCCGGGGAGTGTGCGTGGGACAGTCAGCGAGTCGTATCCTCATCTCATATTCGACGGCTTCACGACACCTTTG
GGCAACCGCGTCGTCAAGGCACTCAAGCATATATTCCCACCGAGAGAACCCATCACGAGCAAGCAAAAGATGGGC
AGCCGAGTGGTTACGTTTAAGAACATAGACGACAGTATCGAAGTACGGCATCACGTCTTTGTACAGACTGGGTAC
GACAGCGTCGAGCTCGCAGAGGTGGGGCCTAGGATGACGATGAAGATGTTTGAAATTCGCGGCGGCACGCTGGAA
AATAAGGACGGCGATGTTGAGTGGCACCTGTCGCAATACACCAGGACAGGCAAGAAGAAGAGCTATTTGTGA
Gene >OphauG2|6787
ATGATTGTAAGTTTAGCTGCTCTACAATTCGTGTATGTCCGCCTCGGCTCACAGGGCTCAATAGCGCAAGCAAGC
CCGCCAAAGAAGAGATTATCTTTACCGCAGAGCCTTGCTCTTGCGCGACGCCGAAATCAGCGAGAAGAGGGCCAA
ACTTCGAGCATCTCTGGCTTCGGGCAAACCTCTTGATGCCTCAATAGCCAACGACAAAGCATTACGCAAAGATTA
TCAATACGATGAGTCGGCGGCAGATGGTGGCATCACAGAGCAACTCGACTTGGACGATGAATATGCGCAGCTGTC
GGGCATTGTCGACCCCCGAGTCCTCGTGTCGACATCAAGAGATGCTTCGGCCAGGCTGTCGGCCTTTTCGAAAGA
AATTCGACTCCTGCTTCCAACGTCAATGCGCATGAATCGAGGAAATCTGATATTGCCAGATCTAGTCAGATCAGC
CAAATCTGCTGGGCTGTCTGACATTGTGATGCTGCACGAGCACCGCGGTACACCAACAGCTCTGACCTTGTCGCA
TTTCCCTCACGGCCCGACCTTGTCTTTTTCGCTTCACAACGTGGTGCTGCGACATGACATTCCGGGGAGTGTGCG
TGGGACAGTCAGCGAGTCGTATCCTCATCTCATATTCGACGGCTTCACGACACCTTTGGGCAACCGCGTCGTCAA
GGCACTCAAGCATATATTCCCACCGAGAGAACCCATCACGAGCAAGCAAAAGATGGGCAGCCGAGTGGTTACGTT
TAAGAACATAGACGACAGTATCGAAGTACGGCATCACGTCTTTGTACAGACTGGGTACGACAGCGTCGAGCTCGC
AGAGGTGGGGCCTAGGATGACGATGAAGATGTTTGAAATTCGCGGCGGCACGCTGGAAAATAAGGACGGCGATGT
TGAGTGGCACCTGTCGCAATACACCAGGACAGGCAAGAAGAAGAGCTATTTGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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