Protein ID | OphauG2|6735 |
Gene name | |
Location | Contig_718:5903..7377 |
Strand | - |
Gene length (bp) | 1474 |
Transcript length (bp) | 1359 |
Coding sequence length (bp) | 1359 |
Protein length (aa) | 453 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00494 | SQS_PSY | Squalene/phytoene synthase | 6.0E-37 | 38 | 313 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q7S4Z6|FDFT_NEUCR | Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 | 10 | 440 | 0.0E+00 |
sp|P36596|FDFT_SCHPO | Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 | 10 | 372 | 2.0E-127 |
sp|Q9Y753|FDFT_YARLI | Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 | 7 | 425 | 6.0E-127 |
sp|O74165|FDFT_CYBJA | Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 | 10 | 407 | 1.0E-114 |
sp|P29704|FDFT_YEAST | Squalene synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG9 PE=1 SV=2 | 23 | 419 | 2.0E-110 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q7S4Z6|FDFT_NEUCR | Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 | 10 | 440 | 0.0E+00 |
sp|P36596|FDFT_SCHPO | Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 | 10 | 372 | 2.0E-127 |
sp|Q9Y753|FDFT_YARLI | Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 | 7 | 425 | 6.0E-127 |
sp|O74165|FDFT_CYBJA | Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 | 10 | 407 | 1.0E-114 |
sp|P29704|FDFT_YEAST | Squalene synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG9 PE=1 SV=2 | 23 | 419 | 2.0E-110 |
sp|P78589|FDFT_CANAX | Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1 | 12 | 414 | 5.0E-108 |
sp|Q752X9|FDFT_ASHGO | Squalene synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG9 PE=3 SV=1 | 10 | 392 | 1.0E-105 |
sp|Q92459|FDFT_USTMA | Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ERG9 PE=3 SV=2 | 6 | 370 | 7.0E-102 |
sp|Q9HGZ6|FDFT_CANGA | Squalene synthase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG9 PE=3 SV=2 | 10 | 374 | 2.0E-101 |
sp|P53798|FDFT_MOUSE | Squalene synthase OS=Mus musculus GN=Fdft1 PE=1 SV=2 | 20 | 350 | 5.0E-95 |
sp|P37268|FDFT_HUMAN | Squalene synthase OS=Homo sapiens GN=FDFT1 PE=1 SV=1 | 20 | 374 | 7.0E-93 |
sp|Q5R6U3|FDFT_PONAB | Squalene synthase OS=Pongo abelii GN=FDFT1 PE=2 SV=1 | 20 | 374 | 7.0E-93 |
sp|Q32KR6|FDFT_BOVIN | Squalene synthase OS=Bos taurus GN=FDFT1 PE=2 SV=1 | 20 | 390 | 1.0E-92 |
sp|Q02769|FDFT_RAT | Squalene synthase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1 | 20 | 350 | 1.0E-91 |
sp|P53799|FDFT_ARATH | Squalene synthase OS=Arabidopsis thaliana GN=SQS1 PE=1 SV=1 | 31 | 410 | 1.0E-76 |
sp|Q9SDW9|BSS_BOTBR | Squalene synthase OS=Botryococcus braunii GN=BSS PE=1 SV=1 | 31 | 343 | 1.0E-75 |
sp|P53800|FDFT_NICBE | Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1 | 31 | 393 | 1.0E-75 |
sp|Q54DR1|FDFT_DICDI | Squalene synthase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1 | 31 | 350 | 9.0E-69 |
sp|G0Y287|BOSS_BOTBR | Botryococcus squalene synthase OS=Botryococcus braunii GN=SSL-2 PE=1 SV=1 | 22 | 343 | 1.0E-61 |
sp|G0Y288|BOCS_BOTBR | Botryococcene synthase OS=Botryococcus braunii GN=SSL-3 PE=2 SV=1 | 17 | 382 | 6.0E-61 |
sp|G0Y286|PSDS_BOTBR | Presqualene diphosphate synthase OS=Botryococcus braunii GN=SSL-1 PE=1 SV=1 | 31 | 330 | 6.0E-51 |
sp|Q4L976|CRTM_STAHJ | Dehydrosqualene synthase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=crtM PE=3 SV=1 | 21 | 227 | 2.0E-07 |
GO Term | Description | Terminal node |
---|---|---|
GO:0009058 | biosynthetic process | Yes |
GO:0008150 | biological_process | No |
GO:0008152 | metabolic process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 19 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 397 | 419 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauG2|6735 MLTQDLIFRKLWHDPVHTRDLSSESETLKECYRLLNMTSRSFASVIQELTSEIRAPVVLFYLVLRGLDTIEDDMA MPIDKKVSILCNFYKTMEVDGWQFHESKEKDRELLEKFDVVITELKKIKKPYYDIIHDLTQKMGKGMADYAQNTD VIENGVQTVKDYELYCHYVAGLVGEGLTRLFVVSELANPKLSERPNLTESMGQFLQKTNIIRDIHEDWQDGRRWY PKEIWSKYVDRWEDLFNVKYRDQAMNCISEMVLDALKHAEECLFYMAAMREQSIFNFVAIPQTMAIATLELTFRN PAVLERNVKITKGDACQIMMESTQNLFTVCEVYRRYSRRIHAKNDPRDPNFLDISTRCAKIEQFIETLYPRQDPK ILSAENAKRQREEPISDPGEGLLMFGIVTLCLIFISAIMLGTAWAMGAKFPAISDLFSESKTATVIPEAGPLGRD EL* |
Coding | >OphauG2|6735 ATGCTAACCCAAGACTTGATATTCAGGAAGCTCTGGCACGACCCCGTACACACGCGTGACCTCTCGAGCGAGTCT GAGACGCTCAAGGAATGCTACCGCTTACTCAACATGACTAGTCGTAGCTTTGCCTCGGTGATACAGGAGCTCACA AGTGAAATTCGCGCTCCAGTCGTCCTCTTCTATCTGGTCCTGCGCGGCCTTGATACTATTGAAGATGACATGGCT ATGCCTATCGACAAGAAGGTCTCAATCTTGTGCAACTTCTACAAGACCATGGAAGTGGATGGCTGGCAATTCCAC GAAAGCAAGGAAAAGGACCGCGAACTCTTGGAGAAGTTTGATGTTGTCATAACAGAACTCAAAAAGATCAAGAAG CCTTACTACGACATCATACATGACCTGACACAAAAAATGGGTAAAGGAATGGCCGACTATGCACAGAACACAGAC GTTATTGAAAATGGCGTTCAAACCGTTAAAGACTACGAGCTCTACTGCCACTACGTTGCAGGCCTCGTTGGTGAA GGGTTGACGCGGTTATTTGTCGTATCAGAGCTAGCCAACCCCAAGCTTTCTGAGCGTCCAAATTTGACAGAGTCT ATGGGCCAATTTCTACAAAAGACCAACATCATTCGCGATATTCACGAAGACTGGCAAGACGGCAGACGATGGTAC CCAAAGGAGATTTGGAGCAAATACGTCGACCGCTGGGAGGATTTGTTCAATGTCAAGTATCGCGATCAAGCCATG AACTGCATTTCAGAAATGGTCCTCGATGCGCTAAAACACGCTGAGGAATGCCTCTTTTACATGGCAGCCATGCGG GAACAAAGCATCTTCAACTTTGTCGCCATTCCCCAGACCATGGCAATTGCCACGCTCGAGCTTACATTTCGCAAT CCAGCCGTGCTTGAGAGAAACGTCAAGATTACCAAAGGCGATGCTTGTCAGATAATGATGGAGTCAACCCAAAAT CTTTTCACAGTCTGTGAAGTTTACCGGCGGTACAGTCGACGTATCCATGCCAAGAACGATCCTCGGGATCCCAAT TTTCTCGATATAAGCACACGATGTGCCAAAATTGAACAGTTCATCGAGACGCTATATCCTAGACAGGATCCCAAG ATACTCTCCGCTGAGAATGCAAAGCGACAGAGAGAGGAGCCTATATCAGATCCAGGTGAAGGTTTACTCATGTTT GGAATTGTCACGCTCTGTCTCATCTTTATTTCTGCCATCATGCTCGGAACAGCTTGGGCCATGGGGGCCAAGTTT CCTGCCATTTCTGATCTCTTCAGCGAGTCCAAGACGGCGACGGTGATACCAGAAGCAGGTCCTCTAGGGCGCGAT GAACTTTAG |
Transcript | >OphauG2|6735 ATGCTAACCCAAGACTTGATATTCAGGAAGCTCTGGCACGACCCCGTACACACGCGTGACCTCTCGAGCGAGTCT GAGACGCTCAAGGAATGCTACCGCTTACTCAACATGACTAGTCGTAGCTTTGCCTCGGTGATACAGGAGCTCACA AGTGAAATTCGCGCTCCAGTCGTCCTCTTCTATCTGGTCCTGCGCGGCCTTGATACTATTGAAGATGACATGGCT ATGCCTATCGACAAGAAGGTCTCAATCTTGTGCAACTTCTACAAGACCATGGAAGTGGATGGCTGGCAATTCCAC GAAAGCAAGGAAAAGGACCGCGAACTCTTGGAGAAGTTTGATGTTGTCATAACAGAACTCAAAAAGATCAAGAAG CCTTACTACGACATCATACATGACCTGACACAAAAAATGGGTAAAGGAATGGCCGACTATGCACAGAACACAGAC GTTATTGAAAATGGCGTTCAAACCGTTAAAGACTACGAGCTCTACTGCCACTACGTTGCAGGCCTCGTTGGTGAA GGGTTGACGCGGTTATTTGTCGTATCAGAGCTAGCCAACCCCAAGCTTTCTGAGCGTCCAAATTTGACAGAGTCT ATGGGCCAATTTCTACAAAAGACCAACATCATTCGCGATATTCACGAAGACTGGCAAGACGGCAGACGATGGTAC CCAAAGGAGATTTGGAGCAAATACGTCGACCGCTGGGAGGATTTGTTCAATGTCAAGTATCGCGATCAAGCCATG AACTGCATTTCAGAAATGGTCCTCGATGCGCTAAAACACGCTGAGGAATGCCTCTTTTACATGGCAGCCATGCGG GAACAAAGCATCTTCAACTTTGTCGCCATTCCCCAGACCATGGCAATTGCCACGCTCGAGCTTACATTTCGCAAT CCAGCCGTGCTTGAGAGAAACGTCAAGATTACCAAAGGCGATGCTTGTCAGATAATGATGGAGTCAACCCAAAAT CTTTTCACAGTCTGTGAAGTTTACCGGCGGTACAGTCGACGTATCCATGCCAAGAACGATCCTCGGGATCCCAAT TTTCTCGATATAAGCACACGATGTGCCAAAATTGAACAGTTCATCGAGACGCTATATCCTAGACAGGATCCCAAG ATACTCTCCGCTGAGAATGCAAAGCGACAGAGAGAGGAGCCTATATCAGATCCAGGTGAAGGTTTACTCATGTTT GGAATTGTCACGCTCTGTCTCATCTTTATTTCTGCCATCATGCTCGGAACAGCTTGGGCCATGGGGGCCAAGTTT CCTGCCATTTCTGATCTCTTCAGCGAGTCCAAGACGGCGACGGTGATACCAGAAGCAGGTCCTCTAGGGCGCGAT GAACTTTAG |
Gene | >OphauG2|6735 ATGCTAACCCAAGACTTGATATTCAGGAAGCTCTGGCACGACCCCGTACACACGCGTGACCTCTCGAGCGAGTCT GAGACGCTCAAGGAATGCTACCGCTTACTCAACATGACTAGTCGTAGCTTTGCCTCGGTGATACAGGAGCTCACA AGTGAAATTCGCGCTCCAGTCGTCCTCTTCTATCTGGTCCTGCGCGGCCTTGATACTATTGAAGATGACATGGCT ATGCCTATCGACAAGAAGGTCTCAATCTTGTGCAACTTCTACAAGACCATGGAAGTGGATGGCTGGCAATTCCAC GAAAGCAAGGAAAAGGACCGCGAACTCTTGGAGAAGTTTGATGTTGTCATAACAGAACTCAAAAAGATCAAGAAG CCTTACTACGACATCATACATGACCTGACACAAAAAATGGGTAAAGGAATGGCCGACTATGCACAGAACACAGAC GTTATTGAAAATGGCGTTCAAACCGTTAAAGACTACGAGCTCTACTGCCACTACGTTGCAGGCCTCGTTGGTGAA GGGTTGACGCGGTTATTTGTCGTATCAGAGCTAGCCAACCCCAAGCTTTCTGAGCGTCCAAATTTGACAGAGTCT ATGGGCCAATTTCTACAAAAGACCAACATCATTCGCGATATTCACGAAGACTGGCAAGACGGCAGACGATGGTAC CCAAAGGAGATTTGGAGCAAATACGTCGACCGCTGGGAGGATTTGTTCAATGTCAAGTATCGCGATCAAGCCATG AACTGCATTTCAGAAATGGTCCTCGATGCGCTAAAACACGCTGAGGAATGCCTCTTTTACATGGCAGCCATGCGG GAACAAAGCATCTTCAACTTTGTCGCCATTCCCCAGACCATGGCAATTGCCACGCTCGAGCTTACATTTCGCAAT CCAGCCGTGCTTGAGAGAAACGTCAAGATTACCAAAGGCGATGCTTGTCAGATAATGATGGAGTCAACCCAAAAT CTTTTCACAGTCTGTGAAGTTTACCGGCGGTACAGTCGACGTATCCATGCCAAGAACGATCCTCGGGATCCCAAT TTTCTCGATATAAGCACACGATGTGCCAAAGTATGCATCTTGAAGCCTTTTCATCTGTGCGTTCTGCTGACGCCG CCACACAGATTGAACAGTTCATCGAGACGCTATATCCTAGACAGGATCCCAAGATACTCTCCGCTGAGAATGCAA AGCGACAGAGAGAGGAGCCTATATCAGATCCAGGTGAAGGTTTACTCATGTTTGGAATTGTCACGCTCTGTCTCA TCTTTATTTCTGCCATCATGGTAAGTGAAACCAACTGTTGCTGCATGTCTCAACTCATGTCTGACAACATGATGT TTGCTAGCTCGGAACAGCTTGGGCCATGGGGGCCAAGTTTCCTGCCATTTCTGATCTCTTCAGCGAGTCCAAGAC GGCGACGGTGATACCAGAAGCAGGTCCTCTAGGGCGCGATGAACTTTAG |