© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|6470 |
| Gene name | |
| Location | Contig_67:22137..23097 |
| Strand | + |
| Gene length (bp) | 960 |
| Transcript length (bp) | 843 |
| Coding sequence length (bp) | 843 |
| Protein length (aa) | 281 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02630 | SCO1-SenC | SCO1/SenC | 1.2E-45 | 116 | 252 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P23833|SCO1_YEAST | Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 | 60 | 276 | 1.0E-79 |
| sp|P38072|SCO2_YEAST | Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 | 74 | 276 | 2.0E-72 |
| sp|O42899|SCO1_SCHPO | Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 | 70 | 269 | 1.0E-66 |
| sp|Q8VYP0|SCO11_ARATH | Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 | 70 | 277 | 8.0E-50 |
| sp|Q5SUC9|SCO1_MOUSE | Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=1 SV=1 | 61 | 274 | 7.0E-48 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P23833|SCO1_YEAST | Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 | 60 | 276 | 1.0E-79 |
| sp|P38072|SCO2_YEAST | Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 | 74 | 276 | 2.0E-72 |
| sp|O42899|SCO1_SCHPO | Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 | 70 | 269 | 1.0E-66 |
| sp|Q8VYP0|SCO11_ARATH | Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 | 70 | 277 | 8.0E-50 |
| sp|Q5SUC9|SCO1_MOUSE | Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=1 SV=1 | 61 | 274 | 7.0E-48 |
| sp|A1A4J8|SCO1_BOVIN | Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1 | 70 | 274 | 2.0E-47 |
| sp|O75880|SCO1_HUMAN | Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1 SV=1 | 70 | 277 | 1.0E-46 |
| sp|Q9ZCW7|SCO22_RICPR | SCO2-like protein RP587 OS=Rickettsia prowazekii (strain Madrid E) GN=RP587 PE=3 SV=1 | 112 | 268 | 9.0E-41 |
| sp|Q8VCL2|SCO2_MOUSE | Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=1 SV=1 | 92 | 273 | 3.0E-40 |
| sp|Q92H76|SCO22_RICCN | SCO2-like protein RC0895 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0895 PE=3 SV=1 | 114 | 264 | 8.0E-40 |
| sp|O43819|SCO2_HUMAN | Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1 SV=3 | 94 | 277 | 1.0E-38 |
| sp|Q4UKW2|SCO22_RICFE | SCO2-like protein RF_0960 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0960 PE=3 SV=1 | 114 | 264 | 3.0E-38 |
| sp|Q1RIN4|SCO22_RICBR | SCO2-like protein RBE_0699 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0699 PE=3 SV=1 | 114 | 262 | 4.0E-38 |
| sp|Q5RH02|SCO2_DANRE | Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3 SV=1 | 68 | 274 | 3.0E-37 |
| sp|A6H784|SCO2_BOVIN | Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1 | 92 | 277 | 1.0E-36 |
| sp|Q8LAL0|SCO12_ARATH | Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=HCC2 PE=2 SV=1 | 110 | 273 | 4.0E-36 |
| sp|Q68WF1|SCO22_RICTY | SCO2-like protein RT0576 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=RT0576 PE=3 SV=2 | 114 | 254 | 8.0E-29 |
| sp|Q52720|SENC_RHOCB | Protein SenC OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=senC PE=3 SV=2 | 99 | 269 | 2.0E-26 |
| sp|P47206|SCOP_PSEST | Putative copper-binding protein OS=Pseudomonas stutzeri GN=scoP PE=3 SV=2 | 121 | 252 | 8.0E-26 |
| sp|Q1RKK4|SCO21_RICBR | SCO2-like protein RBE_0029 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0029 PE=3 SV=1 | 119 | 254 | 1.0E-15 |
| sp|Q92JM5|SCO21_RICCN | SCO2-like protein RC0042 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0042 PE=3 SV=1 | 113 | 254 | 4.0E-15 |
| sp|Q4UNH4|SCO21_RICFE | SCO2-like protein RF_0043 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0043 PE=3 SV=1 | 104 | 254 | 7.0E-15 |
| sp|Q9ZEB4|SCO21_RICPR | SCO2-like protein RP031 OS=Rickettsia prowazekii (strain Madrid E) GN=RP031 PE=3 SV=1 | 118 | 250 | 2.0E-13 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 72 | 91 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|6470 MASRAVWAPRALGGLSGPASIARCQRCFSSRGLRPGLWPSKFLRQAQPTLEQRRTKYKTIEQAKSRYSTGPFSWK AGLVFVLTCGALIYYFEHEKKRMQRKRIAEATKGVGKPKVGGPFVLTDHNGQPFTSDMMMGRHALVYFGFTRCPD ICPEELDKMARIIDLVEAKAPGKLLPIFITCDPQRDGPEALKAYLGEFHKSFIGLTGTYDQIKDTCKAYRVYFST PKEVKPGQDYLVDHSIYFYLMDPEGDFVEALGRQHSPDEGAKLVVDHIKDWKYTK* |
| Coding | >OphauG2|6470 ATGGCATCTCGAGCTGTTTGGGCACCTCGAGCCCTCGGTGGTCTGTCTGGCCCGGCATCCATTGCCCGCTGCCAG CGCTGCTTCTCGAGTCGTGGCCTCAGGCCTGGGCTTTGGCCAAGCAAATTCCTACGACAAGCACAACCCACCCTG GAACAGCGACGGACAAAATACAAGACGATTGAGCAGGCCAAGAGCAGATACAGCACAGGACCCTTTTCATGGAAA GCAGGTCTCGTGTTTGTCTTGACCTGCGGCGCCCTCATCTACTACTTTGAGCATGAGAAGAAGCGCATGCAGCGC AAGCGAATCGCCGAAGCGACCAAGGGTGTCGGAAAGCCCAAAGTCGGCGGCCCATTTGTCCTGACGGACCACAAC GGCCAGCCCTTTACCAGTGACATGATGATGGGGCGCCACGCCCTGGTCTACTTTGGCTTCACGCGGTGCCCCGAC ATTTGCCCCGAGGAACTCGACAAGATGGCGCGCATCATCGACTTGGTTGAGGCCAAGGCGCCTGGCAAGCTGCTT CCCATTTTCATAACGTGCGATCCCCAGCGCGACGGCCCCGAGGCACTCAAGGCCTATCTGGGCGAGTTCCACAAG TCCTTTATAGGCCTGACGGGCACCTATGACCAAATCAAGGACACGTGCAAAGCGTACCGCGTCTATTTTAGCACG CCCAAGGAGGTGAAGCCGGGGCAGGACTATCTTGTAGACCACAGCATATACTTTTACCTGATGGATCCCGAGGGC GACTTTGTCGAGGCACTGGGCAGACAGCACTCGCCGGATGAGGGTGCCAAGCTCGTGGTGGATCACATTAAGGAT TGGAAATATACCAAGTAG |
| Transcript | >OphauG2|6470 ATGGCATCTCGAGCTGTTTGGGCACCTCGAGCCCTCGGTGGTCTGTCTGGCCCGGCATCCATTGCCCGCTGCCAG CGCTGCTTCTCGAGTCGTGGCCTCAGGCCTGGGCTTTGGCCAAGCAAATTCCTACGACAAGCACAACCCACCCTG GAACAGCGACGGACAAAATACAAGACGATTGAGCAGGCCAAGAGCAGATACAGCACAGGACCCTTTTCATGGAAA GCAGGTCTCGTGTTTGTCTTGACCTGCGGCGCCCTCATCTACTACTTTGAGCATGAGAAGAAGCGCATGCAGCGC AAGCGAATCGCCGAAGCGACCAAGGGTGTCGGAAAGCCCAAAGTCGGCGGCCCATTTGTCCTGACGGACCACAAC GGCCAGCCCTTTACCAGTGACATGATGATGGGGCGCCACGCCCTGGTCTACTTTGGCTTCACGCGGTGCCCCGAC ATTTGCCCCGAGGAACTCGACAAGATGGCGCGCATCATCGACTTGGTTGAGGCCAAGGCGCCTGGCAAGCTGCTT CCCATTTTCATAACGTGCGATCCCCAGCGCGACGGCCCCGAGGCACTCAAGGCCTATCTGGGCGAGTTCCACAAG TCCTTTATAGGCCTGACGGGCACCTATGACCAAATCAAGGACACGTGCAAAGCGTACCGCGTCTATTTTAGCACG CCCAAGGAGGTGAAGCCGGGGCAGGACTATCTTGTAGACCACAGCATATACTTTTACCTGATGGATCCCGAGGGC GACTTTGTCGAGGCACTGGGCAGACAGCACTCGCCGGATGAGGGTGCCAAGCTCGTGGTGGATCACATTAAGGAT TGGAAATATACCAAGTAG |
| Gene | >OphauG2|6470 ATGGCATCTCGAGCTGTTTGGGCACCTCGAGCCCTCGGTGGTCTGTCTGGCCCGGCATCCATTGCCCGCTGCCAG CGCTGCTTCTCGAGTCGTGGCCTCAGGCCTGGGCTTTGGCCAAGCAAATTCCTACGACAAGCACAACCCACCCTG GAACAGCGACGGACAAAATACAAGACGATTGAGCAGGCCAAGAGCAGATACAGCACAGGAGTATGCAATCCCACC TGTGGCCTTTTGCAACAAAAGACCTGACGCTTGTTGGCAGCCCTTTTCATGGAAAGCAGGTCTCGTGTTTGTCTT GACCTGCGGCGCCCTCATCTACTACTTTGAGCATGAGAAGAAGCGCATGCAGCGCAAGCGAATCGCCGAAGCGAC CAAGGGTGTCGGAAAGCCCAAAGTCGGCGGCCCATTTGTCCTGACGGACCACAACGGCCAGCCCTTTACCAGTGA CATGATGATGGGGCGCCACGCCCTGGTTAGTCCATTGTCCATGCATGTGCTGCTCGCAAACTGCGCCATCTGATG ACTCGGCTCCAGGTCTACTTTGGCTTCACGCGGTGCCCCGACATTTGCCCCGAGGAACTCGACAAGATGGCGCGC ATCATCGACTTGGTTGAGGCCAAGGCGCCTGGCAAGCTGCTTCCCATTTTCATAACGTGCGATCCCCAGCGCGAC GGCCCCGAGGCACTCAAGGCCTATCTGGGCGAGTTCCACAAGTCCTTTATAGGCCTGACGGGCACCTATGACCAA ATCAAGGACACGTGCAAAGCGTACCGCGTCTATTTTAGCACGCCCAAGGAGGTGAAGCCGGGGCAGGACTATCTT GTAGACCACAGCATATACTTTTACCTGATGGATCCCGAGGGCGACTTTGTCGAGGCACTGGGCAGACAGCACTCG CCGGATGAGGGTGCCAAGCTCGTGGTGGATCACATTAAGGATTGGAAATATACCAAGTAG |