© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|6423 |
| Gene name | |
| Location | Contig_66:37589..38881 |
| Strand | - |
| Gene length (bp) | 1292 |
| Transcript length (bp) | 1203 |
| Coding sequence length (bp) | 1203 |
| Protein length (aa) | 401 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04194 | PDCD2_C | Programmed cell death protein 2, C-terminal putative domain | 1.7E-34 | 280 | 393 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87156|TSR4_SCHPO | Probable 20S rRNA accumulation protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.15 PE=3 SV=1 | 15 | 394 | 1.0E-36 |
| sp|P25040|TSR4_YEAST | 20S rRNA accumulation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR4 PE=1 SV=2 | 35 | 394 | 6.0E-26 |
| sp|Q8C5N5|PDD2L_MOUSE | Programmed cell death protein 2-like OS=Mus musculus GN=Pdcd2l PE=1 SV=1 | 35 | 374 | 2.0E-18 |
| sp|Q9BRP1|PDD2L_HUMAN | Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1 | 35 | 374 | 5.0E-16 |
| sp|Q5ZID2|PDD2L_CHICK | Programmed cell death protein 2-like OS=Gallus gallus GN=PDCD2L PE=2 SV=1 | 278 | 374 | 8.0E-12 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87156|TSR4_SCHPO | Probable 20S rRNA accumulation protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.15 PE=3 SV=1 | 15 | 394 | 1.0E-36 |
| sp|P25040|TSR4_YEAST | 20S rRNA accumulation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR4 PE=1 SV=2 | 35 | 394 | 6.0E-26 |
| sp|Q8C5N5|PDD2L_MOUSE | Programmed cell death protein 2-like OS=Mus musculus GN=Pdcd2l PE=1 SV=1 | 35 | 374 | 2.0E-18 |
| sp|Q9BRP1|PDD2L_HUMAN | Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1 | 35 | 374 | 5.0E-16 |
| sp|Q5ZID2|PDD2L_CHICK | Programmed cell death protein 2-like OS=Gallus gallus GN=PDCD2L PE=2 SV=1 | 278 | 374 | 8.0E-12 |
| sp|P46718|PDCD2_MOUSE | Programmed cell death protein 2 OS=Mus musculus GN=Pdcd2 PE=2 SV=2 | 232 | 392 | 6.0E-11 |
| sp|Q09787|YA99_SCHPO | Uncharacterized protein C13G6.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC13G6.09 PE=4 SV=1 | 280 | 378 | 8.0E-10 |
| sp|Q2YDC9|PDCD2_BOVIN | Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1 | 232 | 392 | 2.0E-09 |
| sp|P47816|PDCD2_RAT | Programmed cell death protein 2 OS=Rattus norvegicus GN=Pdcd2 PE=2 SV=2 | 232 | 378 | 5.0E-09 |
| sp|Q16342|PDCD2_HUMAN | Programmed cell death protein 2 OS=Homo sapiens GN=PDCD2 PE=1 SV=2 | 232 | 373 | 6.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005737 | cytoplasm | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|6423 MAATEYDSDSTEDDFTETNVLLGFATQDGDADIISKLGGTPDWLDADNAPSAALARCQACKELMVLLLQLNGELP DHFPGHERRLYVFACRRAGCRRKEGSVCVLRGVKIWEVEDAVEEDKAPSGDYKKSNQEAELGETLFGVTAMGSAN PFAMNAPSPDPAPSNPFGEPPSLSGITKPEPATPASDREAVPCLSKTFAETLALNVAPSLEAASPGSPLEAWPVG PARPKPYPTFYISEAEYETLDPSVLAPKHTPIRLDDADAPEPSVLDREAFESSMDVTFQKFADRLVQNPDQVIRY EFAGSPLLYSTVDAVGMTLTRSAIPNCPNCGAARVFEVQLTPNAITQLEEGELGLEGMEWGTIIVGVCQSDCAPR GVGKGKAGYLRDWVGVQWEELIKHK* |
| Coding | >OphauG2|6423 ATGGCTGCAACCGAGTACGACTCGGATTCAACAGAAGACGACTTCACTGAGACGAATGTGCTCCTTGGGTTTGCA ACACAAGATGGCGACGCAGACATAATTAGCAAGCTAGGCGGCACTCCGGACTGGCTCGATGCGGATAATGCGCCT TCGGCAGCGCTAGCGCGATGTCAAGCGTGCAAAGAGCTGATGGTGTTGTTGTTGCAGCTCAATGGCGAATTGCCG GATCACTTTCCGGGCCACGAACGACGACTTTATGTGTTTGCATGCAGACGAGCCGGGTGCCGGCGCAAGGAGGGC AGCGTGTGCGTGCTGAGGGGTGTCAAGATATGGGAAGTGGAGGATGCGGTAGAGGAAGACAAGGCGCCGAGCGGA GATTACAAAAAGAGCAATCAGGAAGCAGAACTTGGAGAGACACTCTTTGGCGTGACGGCAATGGGTAGCGCCAAC CCATTTGCCATGAACGCACCATCGCCTGACCCTGCGCCGAGCAACCCATTTGGTGAACCGCCGTCTTTATCAGGC ATCACGAAACCTGAGCCAGCAACTCCCGCTTCCGACAGAGAGGCAGTGCCTTGCTTGTCAAAGACGTTTGCCGAA ACACTGGCTCTGAACGTGGCGCCATCACTCGAGGCTGCTTCTCCCGGATCACCTCTTGAAGCATGGCCTGTTGGC CCTGCCCGACCGAAACCATACCCAACCTTTTACATCTCCGAGGCCGAGTATGAGACACTCGATCCATCAGTACTA GCACCAAAGCATACGCCTATCCGCCTCGACGACGCAGACGCGCCCGAGCCGTCTGTTCTGGACCGTGAGGCATTC GAATCGTCCATGGATGTTACTTTTCAGAAGTTCGCCGACCGCCTGGTGCAGAATCCGGACCAAGTCATTAGATAC GAATTTGCTGGTTCCCCGCTGCTGTACTCGACGGTGGACGCTGTTGGTATGACTCTCACGAGATCAGCCATACCT AATTGTCCCAATTGTGGCGCTGCCAGAGTATTTGAGGTGCAGCTTACGCCAAATGCTATTACTCAACTCGAAGAG GGTGAACTCGGCCTTGAGGGCATGGAATGGGGAACCATTATTGTTGGCGTTTGCCAAAGCGACTGCGCACCCAGA GGTGTGGGAAAGGGCAAGGCTGGATACCTAAGGGATTGGGTTGGTGTGCAATGGGAGGAGCTGATCAAGCATAAG TGA |
| Transcript | >OphauG2|6423 ATGGCTGCAACCGAGTACGACTCGGATTCAACAGAAGACGACTTCACTGAGACGAATGTGCTCCTTGGGTTTGCA ACACAAGATGGCGACGCAGACATAATTAGCAAGCTAGGCGGCACTCCGGACTGGCTCGATGCGGATAATGCGCCT TCGGCAGCGCTAGCGCGATGTCAAGCGTGCAAAGAGCTGATGGTGTTGTTGTTGCAGCTCAATGGCGAATTGCCG GATCACTTTCCGGGCCACGAACGACGACTTTATGTGTTTGCATGCAGACGAGCCGGGTGCCGGCGCAAGGAGGGC AGCGTGTGCGTGCTGAGGGGTGTCAAGATATGGGAAGTGGAGGATGCGGTAGAGGAAGACAAGGCGCCGAGCGGA GATTACAAAAAGAGCAATCAGGAAGCAGAACTTGGAGAGACACTCTTTGGCGTGACGGCAATGGGTAGCGCCAAC CCATTTGCCATGAACGCACCATCGCCTGACCCTGCGCCGAGCAACCCATTTGGTGAACCGCCGTCTTTATCAGGC ATCACGAAACCTGAGCCAGCAACTCCCGCTTCCGACAGAGAGGCAGTGCCTTGCTTGTCAAAGACGTTTGCCGAA ACACTGGCTCTGAACGTGGCGCCATCACTCGAGGCTGCTTCTCCCGGATCACCTCTTGAAGCATGGCCTGTTGGC CCTGCCCGACCGAAACCATACCCAACCTTTTACATCTCCGAGGCCGAGTATGAGACACTCGATCCATCAGTACTA GCACCAAAGCATACGCCTATCCGCCTCGACGACGCAGACGCGCCCGAGCCGTCTGTTCTGGACCGTGAGGCATTC GAATCGTCCATGGATGTTACTTTTCAGAAGTTCGCCGACCGCCTGGTGCAGAATCCGGACCAAGTCATTAGATAC GAATTTGCTGGTTCCCCGCTGCTGTACTCGACGGTGGACGCTGTTGGTATGACTCTCACGAGATCAGCCATACCT AATTGTCCCAATTGTGGCGCTGCCAGAGTATTTGAGGTGCAGCTTACGCCAAATGCTATTACTCAACTCGAAGAG GGTGAACTCGGCCTTGAGGGCATGGAATGGGGAACCATTATTGTTGGCGTTTGCCAAAGCGACTGCGCACCCAGA GGTGTGGGAAAGGGCAAGGCTGGATACCTAAGGGATTGGGTTGGTGTGCAATGGGAGGAGCTGATCAAGCATAAG TGA |
| Gene | >OphauG2|6423 ATGGCTGCAACCGAGTACGACTCGGATTCAACAGAAGACGACTTCACTGAGACGAATGTGCTCCTTGGGTTTGCA ACACAAGATGGCGACGCAGACATAATTAGCAAGCTAGGCGGCACTCCGGTATGCTTAGGGGCCATCGGGCCTTCT ACAATCTTGGGCATCGCAAAGACGAGAACCTGGCTAACTTGATTCGCGCACCCGCCACTTAGGACTGGCTCGATG CGGATAATGCGCCTTCGGCAGCGCTAGCGCGATGTCAAGCGTGCAAAGAGCTGATGGTGTTGTTGTTGCAGCTCA ATGGCGAATTGCCGGATCACTTTCCGGGCCACGAACGACGACTTTATGTGTTTGCATGCAGACGAGCCGGGTGCC GGCGCAAGGAGGGCAGCGTGTGCGTGCTGAGGGGTGTCAAGATATGGGAAGTGGAGGATGCGGTAGAGGAAGACA AGGCGCCGAGCGGAGATTACAAAAAGAGCAATCAGGAAGCAGAACTTGGAGAGACACTCTTTGGCGTGACGGCAA TGGGTAGCGCCAACCCATTTGCCATGAACGCACCATCGCCTGACCCTGCGCCGAGCAACCCATTTGGTGAACCGC CGTCTTTATCAGGCATCACGAAACCTGAGCCAGCAACTCCCGCTTCCGACAGAGAGGCAGTGCCTTGCTTGTCAA AGACGTTTGCCGAAACACTGGCTCTGAACGTGGCGCCATCACTCGAGGCTGCTTCTCCCGGATCACCTCTTGAAG CATGGCCTGTTGGCCCTGCCCGACCGAAACCATACCCAACCTTTTACATCTCCGAGGCCGAGTATGAGACACTCG ATCCATCAGTACTAGCACCAAAGCATACGCCTATCCGCCTCGACGACGCAGACGCGCCCGAGCCGTCTGTTCTGG ACCGTGAGGCATTCGAATCGTCCATGGATGTTACTTTTCAGAAGTTCGCCGACCGCCTGGTGCAGAATCCGGACC AAGTCATTAGATACGAATTTGCTGGTTCCCCGCTGCTGTACTCGACGGTGGACGCTGTTGGTATGACTCTCACGA GATCAGCCATACCTAATTGTCCCAATTGTGGCGCTGCCAGAGTATTTGAGGTGCAGCTTACGCCAAATGCTATTA CTCAACTCGAAGAGGGTGAACTCGGCCTTGAGGGCATGGAATGGGGAACCATTATTGTTGGCGTTTGCCAAAGCG ACTGCGCACCCAGAGGTGTGGGAAAGGGCAAGGCTGGATACCTAAGGGATTGGGTTGGTGTGCAATGGGAGGAGC TGATCAAGCATAAGTGA |