© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|6278 |
| Gene name | |
| Location | Contig_632:2016..3878 |
| Strand | + |
| Gene length (bp) | 1862 |
| Transcript length (bp) | 1680 |
| Coding sequence length (bp) | 1680 |
| Protein length (aa) | 560 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07478 | Dala_Dala_lig_C | D-ala D-ala ligase C-terminus | 1.7E-10 | 124 | 279 |
| PF13649 | Methyltransf_25 | Methyltransferase domain | 8.5E-09 | 365 | 469 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 2.8E-05 | 366 | 455 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A1VST4|DDL_POLNA | D-alanine--D-alanine ligase OS=Polaromonas naphthalenivorans (strain CJ2) GN=ddl PE=3 SV=1 | 127 | 281 | 3.0E-07 |
| sp|Q12EL3|DDL_POLSJ | D-alanine--D-alanine ligase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=ddl PE=3 SV=1 | 49 | 281 | 5.0E-07 |
| sp|Q023Q5|DDL_SOLUE | D-alanine--D-alanine ligase OS=Solibacter usitatus (strain Ellin6076) GN=ddl PE=3 SV=1 | 126 | 285 | 7.0E-07 |
| sp|B1XT11|DDL_POLNS | D-alanine--D-alanine ligase OS=Polynucleobacter necessarius subsp. necessarius (strain STIR1) GN=ddl PE=3 SV=1 | 55 | 281 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008168 | methyltransferase activity | Yes |
| GO:0008716 | D-alanine-D-alanine ligase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016879 | ligase activity, forming carbon-nitrogen bonds | No |
| GO:0016881 | acid-amino acid ligase activity | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| GO:0016740 | transferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0016874 | ligase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|6278 MRICLINSSYEGTGSPFEAASYDPLPDPSRYIPKTRHEFICKFVTKANAKAEIDEICKEKYDFFFNYMWGVESDN VAGLDATLHLESKGIPILAQPSSFLSLTKLHLAKAAELKGLRMPQNTPGKYPKIVKYAASCGSLGLDYHSVCHDE MAVKRRVAHLQQVGNTPLLVSDFIIGAEASAMVIETGRDVVALTPLKYVFPQGTRPDQAFLTWHNKFEACKDGTI TYAFAEGTEKTRLQKAAVDAFRALEIQGAAWARVDMRLERGTNKIYVLEVNSIPAVFYPKGNKLGDDLVVEETFP GAHLALMDMLLATKMIQLGLHKDKAKLLAAHYDKFAPSYDGNWRASGLCKVQQFLARTFDFGGEILDLACGTGAV GRVLNEAGIEAEITGIEVSEGMLQCSADIYRYYKQPIIIGPMEEEIMVSRRVTQEKPSDVGQAAGQYDHIVCFGA LHFLQPVMFNAVLAKMFMLARKSVSFEIDDMPRSYTDFLLNLCGQLFMNYNHVQAIEQFGVPKGWELVHRSHEFL FTSPHTGHDIFGYAFRFERLPKKRLRFKDAGCWP* |
| Coding | >OphauG2|6278 ATGAGAATCTGTCTCATCAACTCGTCCTACGAGGGCACCGGCTCGCCCTTTGAAGCGGCGAGTTATGACCCTCTG CCGGATCCAAGCCGCTACATCCCCAAGACGCGCCATGAGTTTATCTGCAAGTTTGTCACAAAGGCCAATGCCAAG GCCGAGATTGACGAGATTTGCAAGGAAAAGTATGACTTTTTTTTCAACTACATGTGGGGTGTCGAGTCGGACAAT GTTGCCGGTCTCGACGCCACCCTCCATCTCGAGTCCAAAGGCATCCCCATTCTGGCCCAGCCCTCCTCCTTTCTA AGCTTAACCAAGCTGCACCTTGCCAAGGCGGCCGAGCTCAAGGGACTGCGCATGCCTCAAAACACACCTGGCAAA TACCCCAAAATCGTCAAGTATGCCGCCTCTTGCGGCTCGCTTGGCCTCGACTACCACTCGGTCTGCCACGACGAA ATGGCAGTCAAGCGGCGAGTCGCCCATCTCCAGCAAGTCGGCAACACCCCTCTCTTGGTCTCCGACTTCATCATT GGTGCCGAGGCCTCAGCCATGGTCATTGAGACGGGCAGAGACGTGGTGGCGCTGACCCCGCTCAAGTATGTCTTC CCCCAGGGCACTCGGCCAGACCAGGCCTTTTTGACGTGGCACAACAAATTCGAGGCCTGCAAGGACGGAACAATC ACCTATGCCTTTGCCGAGGGCACGGAAAAGACCAGGCTGCAAAAGGCAGCCGTTGACGCCTTTAGGGCTCTCGAG ATCCAGGGCGCGGCCTGGGCACGAGTCGACATGCGTCTTGAACGCGGCACCAACAAAATCTACGTGCTCGAAGTC AACTCGATCCCCGCCGTCTTCTATCCCAAGGGCAACAAGCTTGGCGACGACTTGGTGGTGGAGGAAACCTTTCCC GGCGCCCATCTGGCCTTGATGGACATGCTGCTGGCAACCAAGATGATTCAGCTGGGCCTTCACAAGGACAAGGCA AAGCTCTTGGCCGCTCACTACGACAAGTTTGCCCCGAGCTACGATGGCAACTGGCGCGCTTCCGGGCTGTGCAAG GTGCAGCAGTTCCTGGCGCGTACTTTTGATTTTGGCGGAGAGATACTGGATCTGGCCTGTGGCACTGGGGCCGTG GGCCGCGTCTTGAACGAGGCGGGCATTGAGGCCGAAATCACAGGCATTGAAGTCTCAGAGGGCATGCTGCAGTGC TCTGCCGACATTTACCGCTACTACAAGCAGCCCATTATTATCGGGCCCATGGAGGAGGAAATCATGGTGAGTCGA AGAGTCACTCAAGAGAAGCCATCTGACGTGGGCCAGGCTGCCGGCCAATACGATCACATCGTCTGCTTCGGAGCC CTCCACTTCCTCCAGCCCGTCATGTTCAACGCGGTGCTGGCCAAGATGTTTATGCTGGCGCGGAAATCAGTCTCG TTTGAAATCGACGACATGCCGCGGTCCTATACCGACTTCCTCCTCAACCTGTGTGGCCAACTCTTTATGAATTAC AACCACGTTCAAGCAATCGAGCAGTTTGGAGTGCCCAAGGGCTGGGAGCTTGTCCACAGGTCGCACGAGTTTCTC TTTACCTCGCCGCATACTGGCCATGACATTTTTGGCTATGCCTTTCGTTTTGAGAGGCTTCCAAAGAAGCGGCTA CGCTTCAAGGATGCTGGGTGCTGGCCTTGA |
| Transcript | >OphauG2|6278 ATGAGAATCTGTCTCATCAACTCGTCCTACGAGGGCACCGGCTCGCCCTTTGAAGCGGCGAGTTATGACCCTCTG CCGGATCCAAGCCGCTACATCCCCAAGACGCGCCATGAGTTTATCTGCAAGTTTGTCACAAAGGCCAATGCCAAG GCCGAGATTGACGAGATTTGCAAGGAAAAGTATGACTTTTTTTTCAACTACATGTGGGGTGTCGAGTCGGACAAT GTTGCCGGTCTCGACGCCACCCTCCATCTCGAGTCCAAAGGCATCCCCATTCTGGCCCAGCCCTCCTCCTTTCTA AGCTTAACCAAGCTGCACCTTGCCAAGGCGGCCGAGCTCAAGGGACTGCGCATGCCTCAAAACACACCTGGCAAA TACCCCAAAATCGTCAAGTATGCCGCCTCTTGCGGCTCGCTTGGCCTCGACTACCACTCGGTCTGCCACGACGAA ATGGCAGTCAAGCGGCGAGTCGCCCATCTCCAGCAAGTCGGCAACACCCCTCTCTTGGTCTCCGACTTCATCATT GGTGCCGAGGCCTCAGCCATGGTCATTGAGACGGGCAGAGACGTGGTGGCGCTGACCCCGCTCAAGTATGTCTTC CCCCAGGGCACTCGGCCAGACCAGGCCTTTTTGACGTGGCACAACAAATTCGAGGCCTGCAAGGACGGAACAATC ACCTATGCCTTTGCCGAGGGCACGGAAAAGACCAGGCTGCAAAAGGCAGCCGTTGACGCCTTTAGGGCTCTCGAG ATCCAGGGCGCGGCCTGGGCACGAGTCGACATGCGTCTTGAACGCGGCACCAACAAAATCTACGTGCTCGAAGTC AACTCGATCCCCGCCGTCTTCTATCCCAAGGGCAACAAGCTTGGCGACGACTTGGTGGTGGAGGAAACCTTTCCC GGCGCCCATCTGGCCTTGATGGACATGCTGCTGGCAACCAAGATGATTCAGCTGGGCCTTCACAAGGACAAGGCA AAGCTCTTGGCCGCTCACTACGACAAGTTTGCCCCGAGCTACGATGGCAACTGGCGCGCTTCCGGGCTGTGCAAG GTGCAGCAGTTCCTGGCGCGTACTTTTGATTTTGGCGGAGAGATACTGGATCTGGCCTGTGGCACTGGGGCCGTG GGCCGCGTCTTGAACGAGGCGGGCATTGAGGCCGAAATCACAGGCATTGAAGTCTCAGAGGGCATGCTGCAGTGC TCTGCCGACATTTACCGCTACTACAAGCAGCCCATTATTATCGGGCCCATGGAGGAGGAAATCATGGTGAGTCGA AGAGTCACTCAAGAGAAGCCATCTGACGTGGGCCAGGCTGCCGGCCAATACGATCACATCGTCTGCTTCGGAGCC CTCCACTTCCTCCAGCCCGTCATGTTCAACGCGGTGCTGGCCAAGATGTTTATGCTGGCGCGGAAATCAGTCTCG TTTGAAATCGACGACATGCCGCGGTCCTATACCGACTTCCTCCTCAACCTGTGTGGCCAACTCTTTATGAATTAC AACCACGTTCAAGCAATCGAGCAGTTTGGAGTGCCCAAGGGCTGGGAGCTTGTCCACAGGTCGCACGAGTTTCTC TTTACCTCGCCGCATACTGGCCATGACATTTTTGGCTATGCCTTTCGTTTTGAGAGGCTTCCAAAGAAGCGGCTA CGCTTCAAGGATGCTGGGTGCTGGCCTTGA |
| Gene | >OphauG2|6278 ATGAGAATCTGTCTCATCAACTCGTCCTACGAGGGCACCGGCTCGCCCTTTGAAGCGGCGAGTGTGTTGGACGGG TGTTGTGTCTGCGAGCTGACTGATTTCAGTATGACCCTCTGCCGGATCCAAGCCGCTACATCCCCAAGACGCGCC ATGAGTTTATCTGCAAGTTTGTCACAAAGGCCAATGCCAAGGCCGAGATTGACGAGATTTGCAAGGAAAAGTATG ACTTTTTTTTCAACTACATGGTACGAAGTCTTTTTTTTCCCTCCCTTTTTTCCCCCTGTTTTTTCTCCTCTTTTC CCCCTGTTTTTTCTTCCTCTTTTCCCCCCATCCTTTGTCCTACTCCCCTCCTCTTCTCCTTTTTACTCATCACTG TTTTGCTGCAGTGGGGTGTCGAGTCGGACAATGTTGCCGGTCTCGACGCCACCCTCCATCTCGAGTCCAAAGGCA TCCCCATTCTGGCCCAGCCCTCCTCCTTTCTAAGCTTAACCAAGCTGCACCTTGCCAAGGCGGCCGAGCTCAAGG GACTGCGCATGCCTCAAAACACACCTGGCAAATACCCCAAAATCGTCAAGTATGCCGCCTCTTGCGGCTCGCTTG GCCTCGACTACCACTCGGTCTGCCACGACGAAATGGCAGTCAAGCGGCGAGTCGCCCATCTCCAGCAAGTCGGCA ACACCCCTCTCTTGGTCTCCGACTTCATCATTGGTGCCGAGGCCTCAGCCATGGTCATTGAGACGGGCAGAGACG TGGTGGCGCTGACCCCGCTCAAGTATGTCTTCCCCCAGGGCACTCGGCCAGACCAGGCCTTTTTGACGTGGCACA ACAAATTCGAGGCCTGCAAGGACGGAACAATCACCTATGCCTTTGCCGAGGGCACGGAAAAGACCAGGCTGCAAA AGGCAGCCGTTGACGCCTTTAGGGCTCTCGAGATCCAGGGCGCGGCCTGGGCACGAGTCGACATGCGTCTTGAAC GCGGCACCAACAAAATCTACGTGCTCGAAGTCAACTCGATCCCCGCCGTCTTCTATCCCAAGGGCAACAAGCTTG GCGACGACTTGGTGGTGGAGGAAACCTTTCCCGGCGCCCATCTGGCCTTGATGGACATGCTGCTGGCAACCAAGA TGATTCAGCTGGGCCTTCACAAGGACAAGGCAAAGCTCTTGGCCGCTCACTACGACAAGTTTGCCCCGAGCTACG ATGGCAACTGGCGCGCTTCCGGGCTGTGCAAGGTGCAGCAGTTCCTGGCGCGTACTTTTGATTTTGGCGGAGAGA TACTGGATCTGGCCTGTGGCACTGGGGCCGTGGGCCGCGTCTTGAACGAGGCGGGCATTGAGGCCGAAATCACAG GCATTGAAGTCTCAGAGGGCATGCTGCAGTGCTCTGCCGACATTTACCGCTACTACAAGCAGCCCATTATTATCG GGCCCATGGAGGAGGAAATCATGGTGAGTCGAAGAGTCACTCAAGAGAAGCCATCTGACGTGGGCCAGGCTGCCG GCCAATACGATCACATCGTCTGCTTCGGAGCCCTCCACTTCCTCCAGCCCGTCATGTTCAACGCGGTGCTGGCCA AGATGTTTATGCTGGCGCGGAAATCAGTCTCGTTTGAAATCGACGACATGCCGCGGTCCTATACCGACTTCCTCC TCAACCTGTGTGGCCAACTCTTTATGAATTACAACCACGTTCAAGCAATCGAGCAGTTTGGAGTGCCCAAGGGCT GGGAGCTTGTCCACAGGTCGCACGAGTTTCTCTTTACCTCGCCGCATACTGGCCATGACATTTTTGGCTATGCCT TTCGTTTTGAGAGGCTTCCAAAGAAGCGGCTACGCTTCAAGGATGCTGGGTGCTGGCCTTGA |