© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|6253 |
| Gene name | |
| Location | Contig_629:1614..2986 |
| Strand | - |
| Gene length (bp) | 1372 |
| Transcript length (bp) | 1230 |
| Coding sequence length (bp) | 1230 |
| Protein length (aa) | 410 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13639 | zf-RING_2 | Ring finger domain | 1.5E-10 | 22 | 71 |
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 9.4E-09 | 22 | 71 |
| PF14634 | zf-RING_5 | zinc-RING finger domain | 6.9E-07 | 23 | 71 |
| PF12861 | zf-ANAPC11 | Anaphase-promoting complex subunit 11 RING-H2 finger | 3.0E-06 | 19 | 74 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7K6|YGI4_SCHPO | Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=3 SV=1 | 22 | 74 | 1.0E-06 |
| sp|Q20798|HRD1_CAEEL | E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans GN=sel-11 PE=3 SV=1 | 12 | 74 | 1.0E-06 |
| sp|A8Y4B2|HRD1_CAEBR | E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae GN=sel-11 PE=3 SV=2 | 15 | 74 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0097602 | cullin family protein binding | Yes |
| GO:0061630 | ubiquitin protein ligase activity | Yes |
| GO:0031145 | anaphase-promoting complex-dependent catabolic process | Yes |
| GO:0005680 | anaphase-promoting complex | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0004842 | ubiquitin-protein transferase activity | No |
| GO:0009987 | cellular process | No |
| GO:0006511 | ubiquitin-dependent protein catabolic process | No |
| GO:0019787 | ubiquitin-like protein transferase activity | No |
| GO:0032991 | protein-containing complex | No |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043632 | modification-dependent macromolecule catabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009056 | catabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:1901565 | organonitrogen compound catabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0043167 | ion binding | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0000151 | ubiquitin ligase complex | No |
| GO:0019941 | modification-dependent protein catabolic process | No |
| GO:0005515 | protein binding | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0031461 | cullin-RING ubiquitin ligase complex | No |
| GO:0010498 | proteasomal protein catabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0043169 | cation binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:1902494 | catalytic complex | No |
| GO:0030163 | protein catabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| GO:0000152 | nuclear ubiquitin ligase complex | No |
| GO:1990234 | transferase complex | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005488 | binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0061659 | ubiquitin-like protein ligase activity | No |
| GO:0051603 | proteolysis involved in protein catabolic process | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0043170 | macromolecule metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|6253 MADQTAKGLKDSMSDIADKEKTCVICYNDFGVESPEGINEVPFRLPRCKHIFGDHCIKRWFEDSDRCPYCRDKVR PDPKHYPNSSRAFMNIMRLRGAYLPSALSEQLYSRFIEMAGNDNELIDALARQDRVADRRSPPDDDTGLDQRRTR QRRSSRSPRRPHHAAARESRSAAVALPYSTMPTPDLYTHPLSETANPWPPVPLQVSHQRHARHAASSGTRPLYPA TSRRLPVMSVAAGAYRPPGNGQVDNTAAGNEAYGQSQVVPIIPFYQATPMSVAGLVVNQTSPSMFHQQQYVHTPQ AAGHAPRPSTQGQLQNPPMQNPPVQNPPVQNPPVQSPPVQFPTRETATVTGPAGIHMPSLRPARTTDAYPGTQAP WVAQTTGSHGSQPVATNNQAVPAVSSDVFRALPW* |
| Coding | >OphauG2|6253 ATGGCTGACCAGACTGCCAAGGGTCTGAAGGACTCGATGAGCGACATTGCCGACAAGGAGAAGACCTGCGTCATC TGCTACAACGACTTTGGTGTCGAGTCTCCCGAAGGAATCAACGAGGTTCCTTTTCGTCTCCCCAGATGCAAACAC ATATTTGGTGATCACTGCATCAAGAGATGGTTTGAGGATTCGGACAGATGTCCGTATTGCCGCGACAAGGTGCGC CCGGATCCCAAACACTACCCAAACTCGTCAAGGGCCTTCATGAACATCATGAGACTGCGGGGGGCCTATCTCCCT TCGGCGCTTTCGGAGCAACTCTACTCGCGGTTCATAGAAATGGCTGGCAACGACAACGAACTCATCGATGCTTTG GCACGACAAGACCGAGTAGCAGACCGACGCTCTCCACCCGACGATGACACGGGATTAGATCAACGCCGCACGCGA CAGCGCCGAAGCAGCCGAAGTCCGCGCAGACCGCACCACGCAGCGGCCCGCGAGAGTAGATCCGCCGCCGTCGCC CTTCCATACTCGACGATGCCAACGCCGGACCTATATACACATCCGCTTTCGGAAACGGCGAACCCATGGCCGCCT GTTCCTTTGCAGGTCAGCCACCAGAGACATGCACGGCATGCCGCGTCGAGCGGAACACGTCCATTGTATCCAGCA ACTAGCCGACGTCTTCCAGTCATGAGTGTTGCGGCTGGGGCATATAGGCCGCCGGGAAACGGCCAGGTGGACAAC ACTGCGGCTGGCAACGAGGCCTATGGGCAATCACAGGTGGTGCCAATTATTCCATTCTATCAAGCAACGCCCATG TCAGTGGCTGGCTTGGTGGTTAATCAAACTTCACCGAGTATGTTCCATCAACAGCAATATGTTCACACTCCACAA GCGGCTGGCCATGCGCCGAGGCCTTCAACTCAAGGACAGCTGCAGAACCCCCCAATGCAAAACCCCCCAGTGCAA AACCCCCCAGTGCAAAACCCCCCAGTGCAGAGCCCTCCAGTGCAGTTCCCAACAAGGGAGACGGCGACAGTCACG GGGCCTGCTGGGATCCATATGCCCAGTCTGAGGCCAGCGCGGACGACAGACGCCTACCCCGGGACGCAAGCACCG TGGGTTGCGCAGACGACTGGTTCCCATGGTTCCCAACCGGTGGCTACCAACAATCAAGCAGTCCCCGCCGTTTCA TCAGATGTTTTTAGGGCCCTACCTTGGTGA |
| Transcript | >OphauG2|6253 ATGGCTGACCAGACTGCCAAGGGTCTGAAGGACTCGATGAGCGACATTGCCGACAAGGAGAAGACCTGCGTCATC TGCTACAACGACTTTGGTGTCGAGTCTCCCGAAGGAATCAACGAGGTTCCTTTTCGTCTCCCCAGATGCAAACAC ATATTTGGTGATCACTGCATCAAGAGATGGTTTGAGGATTCGGACAGATGTCCGTATTGCCGCGACAAGGTGCGC CCGGATCCCAAACACTACCCAAACTCGTCAAGGGCCTTCATGAACATCATGAGACTGCGGGGGGCCTATCTCCCT TCGGCGCTTTCGGAGCAACTCTACTCGCGGTTCATAGAAATGGCTGGCAACGACAACGAACTCATCGATGCTTTG GCACGACAAGACCGAGTAGCAGACCGACGCTCTCCACCCGACGATGACACGGGATTAGATCAACGCCGCACGCGA CAGCGCCGAAGCAGCCGAAGTCCGCGCAGACCGCACCACGCAGCGGCCCGCGAGAGTAGATCCGCCGCCGTCGCC CTTCCATACTCGACGATGCCAACGCCGGACCTATATACACATCCGCTTTCGGAAACGGCGAACCCATGGCCGCCT GTTCCTTTGCAGGTCAGCCACCAGAGACATGCACGGCATGCCGCGTCGAGCGGAACACGTCCATTGTATCCAGCA ACTAGCCGACGTCTTCCAGTCATGAGTGTTGCGGCTGGGGCATATAGGCCGCCGGGAAACGGCCAGGTGGACAAC ACTGCGGCTGGCAACGAGGCCTATGGGCAATCACAGGTGGTGCCAATTATTCCATTCTATCAAGCAACGCCCATG TCAGTGGCTGGCTTGGTGGTTAATCAAACTTCACCGAGTATGTTCCATCAACAGCAATATGTTCACACTCCACAA GCGGCTGGCCATGCGCCGAGGCCTTCAACTCAAGGACAGCTGCAGAACCCCCCAATGCAAAACCCCCCAGTGCAA AACCCCCCAGTGCAAAACCCCCCAGTGCAGAGCCCTCCAGTGCAGTTCCCAACAAGGGAGACGGCGACAGTCACG GGGCCTGCTGGGATCCATATGCCCAGTCTGAGGCCAGCGCGGACGACAGACGCCTACCCCGGGACGCAAGCACCG TGGGTTGCGCAGACGACTGGTTCCCATGGTTCCCAACCGGTGGCTACCAACAATCAAGCAGTCCCCGCCGTTTCA TCAGATGTTTTTAGGGCCCTACCTTGGTGA |
| Gene | >OphauG2|6253 ATGGCTGACCAGACTGCCAAGGGTCTGAAGGACTCGATGAGCGACATTGCCGACAAGGAGAAGAGTGAGCAGAAG CAGCCCATGTCTATTTTGCCACGATGGAATGCTCCAAAGAGGGCCAAGCAAGACTGACGCTTTCTGACGCTCTAG CCTGCGTCATCTGCTACAACGACTTTGGTGTCGAGTCTCCCGAAGGAATCAACGAGGTTCCTTTTCGTCTCCCCA GATGCAAACACATATTTGGTGATCACTGCATCAAGAGATGGTTTGAGGATTCGGACAGATGTCCGTATTGCCGCG ACAAGGTGCGCCCGGATCCCAAACACTACCCAAACTCGTCAAGGGCCTTCATGAACATCATGAGACTGCGGGGGG CCTATCTCCCTTCGGCGTCGGTACATCCTTGCCCCAAGGTCCTTTCAGCAACGCCGCTGACTTTGGCGTCAGGCT TTCGGAGCAACTCTACTCGCGGTTCATAGAAATGGCTGGCAACGACAACGAACTCATCGATGCTTTGGCACGACA AGACCGAGTAGCAGACCGACGCTCTCCACCCGACGATGACACGGGATTAGATCAACGCCGCACGCGACAGCGCCG AAGCAGCCGAAGTCCGCGCAGACCGCACCACGCAGCGGCCCGCGAGAGTAGATCCGCCGCCGTCGCCCTTCCATA CTCGACGATGCCAACGCCGGACCTATATACACATCCGCTTTCGGAAACGGCGAACCCATGGCCGCCTGTTCCTTT GCAGGTCAGCCACCAGAGACATGCACGGCATGCCGCGTCGAGCGGAACACGTCCATTGTATCCAGCAACTAGCCG ACGTCTTCCAGTCATGAGTGTTGCGGCTGGGGCATATAGGCCGCCGGGAAACGGCCAGGTGGACAACACTGCGGC TGGCAACGAGGCCTATGGGCAATCACAGGTGGTGCCAATTATTCCATTCTATCAAGCAACGCCCATGTCAGTGGC TGGCTTGGTGGTTAATCAAACTTCACCGAGTATGTTCCATCAACAGCAATATGTTCACACTCCACAAGCGGCTGG CCATGCGCCGAGGCCTTCAACTCAAGGACAGCTGCAGAACCCCCCAATGCAAAACCCCCCAGTGCAAAACCCCCC AGTGCAAAACCCCCCAGTGCAGAGCCCTCCAGTGCAGTTCCCAACAAGGGAGACGGCGACAGTCACGGGGCCTGC TGGGATCCATATGCCCAGTCTGAGGCCAGCGCGGACGACAGACGCCTACCCCGGGACGCAAGCACCGTGGGTTGC GCAGACGACTGGTTCCCATGGTTCCCAACCGGTGGCTACCAACAATCAAGCAGTCCCCGCCGTTTCATCAGATGT TTTTAGGGCCCTACCTTGGTGA |