© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauG2|6233 |
| Gene name | |
| Location | Contig_624:7445..8363 |
| Strand | - |
| Gene length (bp) | 918 |
| Transcript length (bp) | 918 |
| Coding sequence length (bp) | 918 |
| Protein length (aa) | 306 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05383 | La | La domain | 7.3E-19 | 107 | 161 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6K0|YLA3_SCHPO | Uncharacterized HTH La-type RNA-binding protein C1527.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1527.03 PE=1 SV=1 | 96 | 194 | 2.0E-21 |
| sp|Q94K80|LRP1C_ARATH | La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1 | 82 | 189 | 4.0E-17 |
| sp|Q6ZQ58|LARP1_MOUSE | La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=3 | 98 | 190 | 7.0E-16 |
| sp|Q6PKG0|LARP1_HUMAN | La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2 | 100 | 190 | 3.0E-15 |
| sp|Q8RWR2|LRP1B_ARATH | La-related protein 1B OS=Arabidopsis thaliana GN=LARP1B PE=1 SV=2 | 73 | 190 | 4.0E-15 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6K0|YLA3_SCHPO | Uncharacterized HTH La-type RNA-binding protein C1527.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1527.03 PE=1 SV=1 | 96 | 194 | 2.0E-21 |
| sp|Q94K80|LRP1C_ARATH | La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1 | 82 | 189 | 4.0E-17 |
| sp|Q6ZQ58|LARP1_MOUSE | La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=3 | 98 | 190 | 7.0E-16 |
| sp|Q6PKG0|LARP1_HUMAN | La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2 | 100 | 190 | 3.0E-15 |
| sp|Q8RWR2|LRP1B_ARATH | La-related protein 1B OS=Arabidopsis thaliana GN=LARP1B PE=1 SV=2 | 73 | 190 | 4.0E-15 |
| sp|Q659C4|LAR1B_HUMAN | La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2 | 96 | 169 | 6.0E-14 |
| sp|D5MCN2|LARP1_CAEEL | La-related protein 1 OS=Caenorhabditis elegans GN=larp-1 PE=3 SV=2 | 83 | 168 | 1.0E-13 |
| sp|Q9VAW5|LARP_DROME | La-related protein 1 OS=Drosophila melanogaster GN=larp PE=1 SV=5 | 102 | 171 | 1.0E-12 |
| sp|Q9I7T7|Y1505_DROME | La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505 PE=1 SV=2 | 104 | 179 | 5.0E-12 |
| sp|Q940X9|LRP1A_ARATH | La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1 | 64 | 188 | 7.0E-10 |
| sp|Q71RC2|LARP4_HUMAN | La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3 | 104 | 179 | 6.0E-09 |
| sp|Q8BWW4|LARP4_MOUSE | La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2 | 104 | 179 | 8.0E-09 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|6233 MHAQHQHSAGGYGGAGSMTSRPQQGTYSPPLRQGGHSQMFMAPSQRGGRGRNGAGTNFHRMSLPNGSLRLPAVQT QFGPYEYPVPPLSAMPFQPQPYMDSMVLQMLKGQIEYYFSIENLCKDMFLRKRMDSQGFVNLQFVAAFKRIRELT SDMGMIRAVCESSPDLEFVVGEDEVERIRRRSGWQNFVLPMHERDSLARNNGPVHLTFKSRAAAYNSTSPYNNMA PGSYGMSSPLGYNGDTHFQPVADAYTTGMSNGTGGISQLSAEVPDFSPSGLSNLGGIRSHGGDGNIDKNAGANAG NATGN* |
| Coding | >OphauG2|6233 ATGCATGCACAACACCAGCACAGTGCCGGCGGTTATGGTGGTGCTGGATCGATGACATCTCGGCCCCAGCAAGGG ACTTACAGTCCGCCGCTTAGGCAGGGCGGACACAGCCAAATGTTCATGGCACCGTCCCAAAGAGGTGGTCGAGGG CGCAATGGCGCTGGCACCAACTTTCACCGCATGTCTTTACCAAACGGATCATTACGTCTTCCTGCCGTGCAGACG CAATTTGGCCCGTATGAATACCCTGTGCCACCACTGTCTGCGATGCCATTCCAGCCTCAGCCCTATATGGACAGC ATGGTATTGCAGATGCTCAAAGGCCAGATTGAGTATTATTTTTCAATTGAGAATCTCTGCAAAGATATGTTTCTT CGCAAGAGGATGGATTCGCAGGGTTTCGTCAACTTGCAGTTTGTGGCGGCGTTTAAGCGCATAAGAGAGCTAACG TCGGACATGGGCATGATACGGGCCGTGTGCGAGTCGTCGCCAGACCTTGAATTCGTGGTAGGCGAGGATGAGGTG GAGCGCATACGCAGAAGATCAGGCTGGCAGAATTTTGTTCTGCCCATGCACGAGCGAGACAGCTTGGCTCGCAAT AATGGCCCTGTGCATCTGACATTCAAAAGCCGTGCAGCAGCATATAACTCGACATCGCCTTACAATAACATGGCA CCGGGCTCGTATGGCATGTCATCTCCCCTGGGCTATAATGGCGACACTCATTTTCAGCCCGTGGCCGACGCCTAC ACGACGGGCATGTCGAACGGTACTGGCGGCATTAGCCAGCTTTCGGCTGAAGTGCCCGATTTTTCGCCTTCCGGA TTGAGCAATCTTGGTGGCATCCGAAGCCATGGTGGCGATGGCAACATTGACAAGAATGCAGGCGCAAATGCTGGA AATGCTACTGGAAATTAA |
| Transcript | >OphauG2|6233 ATGCATGCACAACACCAGCACAGTGCCGGCGGTTATGGTGGTGCTGGATCGATGACATCTCGGCCCCAGCAAGGG ACTTACAGTCCGCCGCTTAGGCAGGGCGGACACAGCCAAATGTTCATGGCACCGTCCCAAAGAGGTGGTCGAGGG CGCAATGGCGCTGGCACCAACTTTCACCGCATGTCTTTACCAAACGGATCATTACGTCTTCCTGCCGTGCAGACG CAATTTGGCCCGTATGAATACCCTGTGCCACCACTGTCTGCGATGCCATTCCAGCCTCAGCCCTATATGGACAGC ATGGTATTGCAGATGCTCAAAGGCCAGATTGAGTATTATTTTTCAATTGAGAATCTCTGCAAAGATATGTTTCTT CGCAAGAGGATGGATTCGCAGGGTTTCGTCAACTTGCAGTTTGTGGCGGCGTTTAAGCGCATAAGAGAGCTAACG TCGGACATGGGCATGATACGGGCCGTGTGCGAGTCGTCGCCAGACCTTGAATTCGTGGTAGGCGAGGATGAGGTG GAGCGCATACGCAGAAGATCAGGCTGGCAGAATTTTGTTCTGCCCATGCACGAGCGAGACAGCTTGGCTCGCAAT AATGGCCCTGTGCATCTGACATTCAAAAGCCGTGCAGCAGCATATAACTCGACATCGCCTTACAATAACATGGCA CCGGGCTCGTATGGCATGTCATCTCCCCTGGGCTATAATGGCGACACTCATTTTCAGCCCGTGGCCGACGCCTAC ACGACGGGCATGTCGAACGGTACTGGCGGCATTAGCCAGCTTTCGGCTGAAGTGCCCGATTTTTCGCCTTCCGGA TTGAGCAATCTTGGTGGCATCCGAAGCCATGGTGGCGATGGCAACATTGACAAGAATGCAGGCGCAAATGCTGGA AATGCTACTGGAAATTAA |
| Gene | >OphauG2|6233 ATGCATGCACAACACCAGCACAGTGCCGGCGGTTATGGTGGTGCTGGATCGATGACATCTCGGCCCCAGCAAGGG ACTTACAGTCCGCCGCTTAGGCAGGGCGGACACAGCCAAATGTTCATGGCACCGTCCCAAAGAGGTGGTCGAGGG CGCAATGGCGCTGGCACCAACTTTCACCGCATGTCTTTACCAAACGGATCATTACGTCTTCCTGCCGTGCAGACG CAATTTGGCCCGTATGAATACCCTGTGCCACCACTGTCTGCGATGCCATTCCAGCCTCAGCCCTATATGGACAGC ATGGTATTGCAGATGCTCAAAGGCCAGATTGAGTATTATTTTTCAATTGAGAATCTCTGCAAAGATATGTTTCTT CGCAAGAGGATGGATTCGCAGGGTTTCGTCAACTTGCAGTTTGTGGCGGCGTTTAAGCGCATAAGAGAGCTAACG TCGGACATGGGCATGATACGGGCCGTGTGCGAGTCGTCGCCAGACCTTGAATTCGTGGTAGGCGAGGATGAGGTG GAGCGCATACGCAGAAGATCAGGCTGGCAGAATTTTGTTCTGCCCATGCACGAGCGAGACAGCTTGGCTCGCAAT AATGGCCCTGTGCATCTGACATTCAAAAGCCGTGCAGCAGCATATAACTCGACATCGCCTTACAATAACATGGCA CCGGGCTCGTATGGCATGTCATCTCCCCTGGGCTATAATGGCGACACTCATTTTCAGCCCGTGGCCGACGCCTAC ACGACGGGCATGTCGAACGGTACTGGCGGCATTAGCCAGCTTTCGGCTGAAGTGCCCGATTTTTCGCCTTCCGGA TTGAGCAATCTTGGTGGCATCCGAAGCCATGGTGGCGATGGCAACATTGACAAGAATGCAGGCGCAAATGCTGGA AATGCTACTGGAAATTAA |