© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|6188 |
| Gene name | |
| Location | Contig_616:834..1902 |
| Strand | + |
| Gene length (bp) | 1068 |
| Transcript length (bp) | 1068 |
| Coding sequence length (bp) | 1068 |
| Protein length (aa) | 356 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03069 | FmdA_AmdA | Acetamidase/Formamidase family | 6.0E-13 | 113 | 201 |
| PF03069 | FmdA_AmdA | Acetamidase/Formamidase family | 8.2E-26 | 206 | 354 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q07838|AMDA_MYCSM | Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=1 SV=2 | 114 | 253 | 2.0E-12 |
| sp|Q50228|FMDA_METME | Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1 | 114 | 275 | 4.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 32 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|6188 MAYFIQGRRSAEATSFTSLCIKYLLIAVVMALPTQCQVHRLEATPETIAYGYYWSEARPVLRIASGDIVDVDTLV AGSPQQLAKAGVPDEEIQDSLKKVEAAFPEGSPGRGPGVHILTGPVYVEGAEANDVLEVNILSIDLQIGYGYNGC GGFLPENCDSSLSERIVRLDNQTMTSEFLPGIVLPLKPFFGSMGVAPAPELGRVSSIPPGKHAGNLDNKELVAGS TLYMPVFVPGALFQVGDGHAAQGDGEVDRNAIETSLNGKIQLTVRKDLKLTWPRAETATHYISMATDPDLAIATK TAIQEMIDFLVVARGLTKHQAYQLVSIAGDVVVTQLVDRPNLGVHVKMAKDIFKL* |
| Coding | >OphauG2|6188 ATGGCATATTTTATCCAGGGTAGACGTAGCGCCGAGGCGACAAGCTTTACAAGTTTATGCATCAAGTATCTGTTG ATTGCCGTGGTGATGGCACTACCGACGCAATGTCAAGTACACCGGCTCGAGGCGACGCCTGAGACCATCGCCTAT GGCTACTACTGGTCAGAAGCGAGACCGGTGCTGCGTATAGCATCCGGAGACATTGTTGATGTCGACACGCTGGTC GCGGGCTCGCCCCAGCAACTCGCCAAGGCGGGGGTCCCTGATGAAGAAATTCAAGACTCGCTCAAGAAAGTCGAA GCCGCGTTTCCTGAAGGCAGCCCCGGGCGGGGTCCGGGCGTCCATATCCTTACCGGCCCCGTCTATGTCGAGGGT GCGGAAGCCAACGATGTTCTCGAAGTCAATATACTCTCCATCGACCTACAGATTGGATACGGCTACAACGGCTGT GGTGGCTTCTTGCCTGAGAACTGCGACTCTTCGCTCAGCGAGCGCATCGTACGGCTGGATAACCAGACCATGACG TCCGAGTTTCTCCCAGGTATCGTGCTGCCACTCAAACCCTTCTTCGGCAGCATGGGAGTCGCGCCGGCTCCAGAG CTCGGTCGCGTGAGCAGCATTCCGCCGGGCAAACATGCCGGCAATCTCGATAATAAGGAACTCGTCGCCGGCTCG ACACTCTACATGCCAGTCTTCGTGCCAGGTGCCTTGTTTCAAGTCGGCGACGGCCACGCGGCCCAGGGCGACGGC GAGGTCGACCGCAACGCCATTGAGACATCATTAAATGGCAAGATCCAGCTTACTGTTCGCAAAGATTTGAAGCTC ACGTGGCCACGGGCCGAGACTGCGACGCATTATATCTCCATGGCCACAGATCCAGATCTTGCCATTGCCACAAAG ACGGCAATCCAAGAAATGATTGACTTTCTTGTTGTTGCTCGCGGCCTGACCAAGCATCAGGCCTATCAACTCGTC AGCATCGCCGGAGATGTTGTCGTTACACAGCTCGTCGATCGTCCCAACTTGGGGGTGCACGTCAAGATGGCCAAG GATATCTTTAAGCTCTAA |
| Transcript | >OphauG2|6188 ATGGCATATTTTATCCAGGGTAGACGTAGCGCCGAGGCGACAAGCTTTACAAGTTTATGCATCAAGTATCTGTTG ATTGCCGTGGTGATGGCACTACCGACGCAATGTCAAGTACACCGGCTCGAGGCGACGCCTGAGACCATCGCCTAT GGCTACTACTGGTCAGAAGCGAGACCGGTGCTGCGTATAGCATCCGGAGACATTGTTGATGTCGACACGCTGGTC GCGGGCTCGCCCCAGCAACTCGCCAAGGCGGGGGTCCCTGATGAAGAAATTCAAGACTCGCTCAAGAAAGTCGAA GCCGCGTTTCCTGAAGGCAGCCCCGGGCGGGGTCCGGGCGTCCATATCCTTACCGGCCCCGTCTATGTCGAGGGT GCGGAAGCCAACGATGTTCTCGAAGTCAATATACTCTCCATCGACCTACAGATTGGATACGGCTACAACGGCTGT GGTGGCTTCTTGCCTGAGAACTGCGACTCTTCGCTCAGCGAGCGCATCGTACGGCTGGATAACCAGACCATGACG TCCGAGTTTCTCCCAGGTATCGTGCTGCCACTCAAACCCTTCTTCGGCAGCATGGGAGTCGCGCCGGCTCCAGAG CTCGGTCGCGTGAGCAGCATTCCGCCGGGCAAACATGCCGGCAATCTCGATAATAAGGAACTCGTCGCCGGCTCG ACACTCTACATGCCAGTCTTCGTGCCAGGTGCCTTGTTTCAAGTCGGCGACGGCCACGCGGCCCAGGGCGACGGC GAGGTCGACCGCAACGCCATTGAGACATCATTAAATGGCAAGATCCAGCTTACTGTTCGCAAAGATTTGAAGCTC ACGTGGCCACGGGCCGAGACTGCGACGCATTATATCTCCATGGCCACAGATCCAGATCTTGCCATTGCCACAAAG ACGGCAATCCAAGAAATGATTGACTTTCTTGTTGTTGCTCGCGGCCTGACCAAGCATCAGGCCTATCAACTCGTC AGCATCGCCGGAGATGTTGTCGTTACACAGCTCGTCGATCGTCCCAACTTGGGGGTGCACGTCAAGATGGCCAAG GATATCTTTAAGCTCTAA |
| Gene | >OphauG2|6188 ATGGCATATTTTATCCAGGGTAGACGTAGCGCCGAGGCGACAAGCTTTACAAGTTTATGCATCAAGTATCTGTTG ATTGCCGTGGTGATGGCACTACCGACGCAATGTCAAGTACACCGGCTCGAGGCGACGCCTGAGACCATCGCCTAT GGCTACTACTGGTCAGAAGCGAGACCGGTGCTGCGTATAGCATCCGGAGACATTGTTGATGTCGACACGCTGGTC GCGGGCTCGCCCCAGCAACTCGCCAAGGCGGGGGTCCCTGATGAAGAAATTCAAGACTCGCTCAAGAAAGTCGAA GCCGCGTTTCCTGAAGGCAGCCCCGGGCGGGGTCCGGGCGTCCATATCCTTACCGGCCCCGTCTATGTCGAGGGT GCGGAAGCCAACGATGTTCTCGAAGTCAATATACTCTCCATCGACCTACAGATTGGATACGGCTACAACGGCTGT GGTGGCTTCTTGCCTGAGAACTGCGACTCTTCGCTCAGCGAGCGCATCGTACGGCTGGATAACCAGACCATGACG TCCGAGTTTCTCCCAGGTATCGTGCTGCCACTCAAACCCTTCTTCGGCAGCATGGGAGTCGCGCCGGCTCCAGAG CTCGGTCGCGTGAGCAGCATTCCGCCGGGCAAACATGCCGGCAATCTCGATAATAAGGAACTCGTCGCCGGCTCG ACACTCTACATGCCAGTCTTCGTGCCAGGTGCCTTGTTTCAAGTCGGCGACGGCCACGCGGCCCAGGGCGACGGC GAGGTCGACCGCAACGCCATTGAGACATCATTAAATGGCAAGATCCAGCTTACTGTTCGCAAAGATTTGAAGCTC ACGTGGCCACGGGCCGAGACTGCGACGCATTATATCTCCATGGCCACAGATCCAGATCTTGCCATTGCCACAAAG ACGGCAATCCAAGAAATGATTGACTTTCTTGTTGTTGCTCGCGGCCTGACCAAGCATCAGGCCTATCAACTCGTC AGCATCGCCGGAGATGTTGTCGTTACACAGCTCGTCGATCGTCCCAACTTGGGGGTGCACGTCAAGATGGCCAAG GATATCTTTAAGCTCTAA |