© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|6135 |
| Gene name | |
| Location | Contig_605:1620..1925 |
| Strand | - |
| Gene length (bp) | 305 |
| Transcript length (bp) | 228 |
| Coding sequence length (bp) | 228 |
| Protein length (aa) | 76 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00957 | Synaptobrevin | Synaptobrevin | 5.0E-28 | 1 | 70 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q92356|SYB1_SCHPO | Synaptobrevin homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=syb1 PE=3 SV=1 | 1 | 51 | 5.0E-27 |
| sp|P33328|SNC2_YEAST | Synaptobrevin homolog 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC2 PE=1 SV=2 | 1 | 55 | 7.0E-27 |
| sp|P31109|SNC1_YEAST | Synaptobrevin homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC1 PE=1 SV=1 | 1 | 53 | 1.0E-24 |
| sp|Q9M376|VA727_ARATH | Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1 | 1 | 65 | 5.0E-11 |
| sp|Q32L97|VAMP4_BOVIN | Vesicle-associated membrane protein 4 OS=Bos taurus GN=VAMP4 PE=2 SV=1 | 1 | 54 | 6.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q92356|SYB1_SCHPO | Synaptobrevin homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=syb1 PE=3 SV=1 | 1 | 51 | 5.0E-27 |
| sp|P33328|SNC2_YEAST | Synaptobrevin homolog 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC2 PE=1 SV=2 | 1 | 55 | 7.0E-27 |
| sp|P31109|SNC1_YEAST | Synaptobrevin homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC1 PE=1 SV=1 | 1 | 53 | 1.0E-24 |
| sp|Q9M376|VA727_ARATH | Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1 | 1 | 65 | 5.0E-11 |
| sp|Q32L97|VAMP4_BOVIN | Vesicle-associated membrane protein 4 OS=Bos taurus GN=VAMP4 PE=2 SV=1 | 1 | 54 | 6.0E-10 |
| sp|O75379|VAMP4_HUMAN | Vesicle-associated membrane protein 4 OS=Homo sapiens GN=VAMP4 PE=1 SV=2 | 1 | 54 | 7.0E-10 |
| sp|O70480|VAMP4_MOUSE | Vesicle-associated membrane protein 4 OS=Mus musculus GN=Vamp4 PE=1 SV=1 | 1 | 51 | 7.0E-10 |
| sp|O48850|VA725_ARATH | Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2 | 1 | 51 | 1.0E-09 |
| sp|Q9LFP1|VA713_ARATH | Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1 | 1 | 70 | 1.0E-09 |
| sp|Q9FMR5|VA714_ARATH | Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=1 SV=1 | 1 | 66 | 8.0E-09 |
| sp|P18489|SYB_DROME | Synaptobrevin OS=Drosophila melanogaster GN=Syb PE=2 SV=3 | 1 | 67 | 8.0E-09 |
| sp|P47192|VA722_ARATH | Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2 | 1 | 51 | 3.0E-08 |
| sp|Q9MAS5|VA726_ARATH | Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2 | 1 | 57 | 3.0E-08 |
| sp|O23429|VA724_ARATH | Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2 | 1 | 51 | 5.0E-08 |
| sp|Q54GB3|SYBB_DICDI | Synaptobrevin-B OS=Dictyostelium discoideum GN=sybB PE=3 SV=1 | 1 | 71 | 6.0E-08 |
| sp|Q9ZTW3|VA721_ARATH | Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=1 SV=1 | 1 | 51 | 7.0E-08 |
| sp|Q3T0Y8|VAMP8_BOVIN | Vesicle-associated membrane protein 8 OS=Bos taurus GN=VAMP8 PE=3 SV=1 | 1 | 54 | 1.0E-07 |
| sp|Q12255|NYV1_YEAST | Vacuolar v-SNARE NYV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NYV1 PE=1 SV=2 | 1 | 62 | 1.0E-07 |
| sp|O70404|VAMP8_MOUSE | Vesicle-associated membrane protein 8 OS=Mus musculus GN=Vamp8 PE=1 SV=1 | 1 | 50 | 2.0E-07 |
| sp|Q9WUF4|VAMP8_RAT | Vesicle-associated membrane protein 8 OS=Rattus norvegicus GN=Vamp8 PE=1 SV=1 | 1 | 50 | 3.0E-07 |
| sp|P63026|VAMP2_BOVIN | Vesicle-associated membrane protein 2 OS=Bos taurus GN=VAMP2 PE=1 SV=2 | 1 | 58 | 3.0E-07 |
| sp|P63027|VAMP2_HUMAN | Vesicle-associated membrane protein 2 OS=Homo sapiens GN=VAMP2 PE=1 SV=3 | 1 | 58 | 3.0E-07 |
| sp|Q9N0Y0|VAMP2_MACMU | Vesicle-associated membrane protein 2 OS=Macaca mulatta GN=VAMP2 PE=3 SV=3 | 1 | 58 | 3.0E-07 |
| sp|P63044|VAMP2_MOUSE | Vesicle-associated membrane protein 2 OS=Mus musculus GN=Vamp2 PE=1 SV=2 | 1 | 58 | 3.0E-07 |
| sp|P63045|VAMP2_RAT | Vesicle-associated membrane protein 2 OS=Rattus norvegicus GN=Vamp2 PE=1 SV=2 | 1 | 58 | 3.0E-07 |
| sp|P47193|VAMP2_XENLA | Vesicle-associated membrane protein 2 OS=Xenopus laevis GN=vamp2 PE=3 SV=3 | 1 | 58 | 3.0E-07 |
| sp|Q5REQ5|VAMP8_PONAB | Vesicle-associated membrane protein 8 OS=Pongo abelii GN=VAMP8 PE=3 SV=1 | 1 | 54 | 4.0E-07 |
| sp|Q9BV40|VAMP8_HUMAN | Vesicle-associated membrane protein 8 OS=Homo sapiens GN=VAMP8 PE=1 SV=1 | 1 | 54 | 4.0E-07 |
| sp|O49377|VA711_ARATH | Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=1 SV=2 | 1 | 49 | 1.0E-06 |
| sp|Q0V7N0|VAMP1_BOVIN | Vesicle-associated membrane protein 1 OS=Bos taurus GN=VAMP1 PE=3 SV=2 | 1 | 60 | 1.0E-06 |
| sp|Q62442|VAMP1_MOUSE | Vesicle-associated membrane protein 1 OS=Mus musculus GN=Vamp1 PE=1 SV=1 | 1 | 60 | 2.0E-06 |
| sp|Q63666|VAMP1_RAT | Vesicle-associated membrane protein 1 OS=Rattus norvegicus GN=Vamp1 PE=1 SV=2 | 1 | 59 | 3.0E-06 |
| sp|Q54NW7|VAM7A_DICDI | Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1 | 1 | 64 | 4.0E-06 |
| sp|P23763|VAMP1_HUMAN | Vesicle-associated membrane protein 1 OS=Homo sapiens GN=VAMP1 PE=1 SV=1 | 1 | 60 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 50 | 72 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|6135 MRDNINKVSQRGERLDALQDKTDNLAVSAQGFRRGANRVRKQMWWKDMKMRVCIIIGIIVLLLIIILPAVLATRK * |
| Coding | >OphauG2|6135 ATGCGCGATAACATCAACAAAGTGTCCCAACGTGGAGAACGGCTCGATGCTCTTCAAGACAAGACGGACAACCTG GCCGTGTCAGCCCAAGGCTTCCGCCGCGGCGCCAACCGGGTCCGCAAGCAAATGTGGTGGAAAGACATGAAGATG CGCGTTTGCATCATCATTGGCATCATTGTCTTGCTCCTCATCATCATTCTTCCTGCTGTTTTGGCAACTCGCAAG TGA |
| Transcript | >OphauG2|6135 ATGCGCGATAACATCAACAAAGTGTCCCAACGTGGAGAACGGCTCGATGCTCTTCAAGACAAGACGGACAACCTG GCCGTGTCAGCCCAAGGCTTCCGCCGCGGCGCCAACCGGGTCCGCAAGCAAATGTGGTGGAAAGACATGAAGATG CGCGTTTGCATCATCATTGGCATCATTGTCTTGCTCCTCATCATCATTCTTCCTGCTGTTTTGGCAACTCGCAAG TGA |
| Gene | >OphauG2|6135 ATGCGCGATAACATCAACAAAGTGTCCCAACGTGGAGAACGGCTCGATGCTCTTCAAGACAAGACGGACAACCTG GCCGTGTCAGCCCAAGGCTTCCGCCGCGGCGCCAACCGGGTCCGCAAGCAAATGTGGTGGAAAGACATGAAGATG CGCGTTTGCATCATCATTGGCATCATTGTCTTGCTCCTCATCATCATTCTTCCTGCTGGTAAGAGCCCCCCCCCC CCTTTTTTTTTTTAATGGAACTGTGACGGAACCAAAGTGCTAAGCCTTGTCATGATATAGTTTTGGCAACTCGCA AGTGA |