© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|6022 |
| Gene name | |
| Location | Contig_590:6813..7947 |
| Strand | - |
| Gene length (bp) | 1134 |
| Transcript length (bp) | 1134 |
| Coding sequence length (bp) | 1134 |
| Protein length (aa) | 378 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05625 | PAXNEB | PAXNEB protein | 4.4E-94 | 33 | 377 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9USP1|ELP4_SCHPO | Elongator complex protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elp4 PE=3 SV=1 | 34 | 377 | 2.0E-38 |
| sp|Q02884|ELP4_YEAST | Elongator complex protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELP4 PE=1 SV=1 | 33 | 321 | 3.0E-29 |
| sp|Q2TBH6|ELP4_BOVIN | Elongator complex protein 4 OS=Bos taurus GN=ELP4 PE=2 SV=1 | 33 | 372 | 8.0E-19 |
| sp|Q9ER73|ELP4_MOUSE | Elongator complex protein 4 OS=Mus musculus GN=Elp4 PE=1 SV=2 | 33 | 372 | 2.0E-18 |
| sp|Q5XG58|ELP4_XENLA | Elongator complex protein 4 OS=Xenopus laevis GN=elp4 PE=2 SV=1 | 34 | 365 | 1.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9USP1|ELP4_SCHPO | Elongator complex protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elp4 PE=3 SV=1 | 34 | 377 | 2.0E-38 |
| sp|Q02884|ELP4_YEAST | Elongator complex protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELP4 PE=1 SV=1 | 33 | 321 | 3.0E-29 |
| sp|Q2TBH6|ELP4_BOVIN | Elongator complex protein 4 OS=Bos taurus GN=ELP4 PE=2 SV=1 | 33 | 372 | 8.0E-19 |
| sp|Q9ER73|ELP4_MOUSE | Elongator complex protein 4 OS=Mus musculus GN=Elp4 PE=1 SV=2 | 33 | 372 | 2.0E-18 |
| sp|Q5XG58|ELP4_XENLA | Elongator complex protein 4 OS=Xenopus laevis GN=elp4 PE=2 SV=1 | 34 | 365 | 1.0E-16 |
| sp|Q96EB1|ELP4_HUMAN | Elongator complex protein 4 OS=Homo sapiens GN=ELP4 PE=1 SV=2 | 33 | 373 | 2.0E-16 |
| sp|Q566Y1|ELP4_DANRE | Elongator complex protein 4 OS=Danio rerio GN=elp4 PE=2 SV=2 | 34 | 366 | 2.0E-15 |
| sp|Q54XS0|ELP4_DICDI | Probable elongator complex protein 4 OS=Dictyostelium discoideum GN=elp4 PE=3 SV=1 | 34 | 287 | 3.0E-10 |
| sp|Q60ZM2|ELP4_CAEBR | Putative elongator complex protein 4 OS=Caenorhabditis briggsae GN=elpc-4 PE=3 SV=1 | 46 | 377 | 1.0E-08 |
| sp|Q9VMQ7|ELP4_DROME | Putative elongator complex protein 4 OS=Drosophila melanogaster GN=CG6907 PE=1 SV=1 | 34 | 174 | 7.0E-07 |
| sp|Q9C778|ELP4_ARATH | Elongator complex protein 4 OS=Arabidopsis thaliana GN=ELP4 PE=1 SV=1 | 34 | 262 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0033588 | elongator holoenzyme complex | Yes |
| GO:0002098 | tRNA wobble uridine modification | Yes |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0006400 | tRNA modification | No |
| GO:0043412 | macromolecule modification | No |
| GO:0009451 | RNA modification | No |
| GO:0006396 | RNA processing | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0008033 | tRNA processing | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0002097 | tRNA wobble base modification | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|6022 MSFRKRNTVIRATGSQRDPDKPSNAINHGLVSAGVRPSPLDGRPTTSTGTASLDQLLAGHAGLPLASSLLLEENG TSDFSGVLLRYYAAEGLVQGHTIHVLGTDELVWRRQLPGLAKASTTENSSKISVPAEKMRIAWRYEALGGANKKA SLPAGNTSAEPFCHSFDMSKHLDAAAVQGQVEFTNCITHAGGVPFSSFLDRLGSVLQKSPPSSIHRVLVPGLLSP ALYSSAACQPQNVLQFLHGLRNLLRKFPNQATAMLTLPLPLYPRSSGLTRWMELLVDGVMELVPLNHRSLVTTGE ADAKTQGLLKMHSYPVFHEKGGGLQDALCCQDLGFSLSALDGIVISPLSLPPLGSDETATKSSSEVVKETTQQKL EF* |
| Coding | >OphauG2|6022 ATGTCGTTTAGAAAGCGAAACACCGTCATTCGGGCGACAGGAAGCCAAAGGGACCCGGACAAGCCTTCCAATGCC ATCAACCATGGTCTCGTGAGCGCTGGTGTTCGGCCGTCGCCTCTTGATGGAAGGCCAACAACGTCAACGGGCACT GCTTCGCTGGACCAGTTATTAGCTGGACACGCCGGGCTGCCGCTTGCCTCCTCGCTCTTGCTGGAAGAGAACGGC ACGAGCGATTTCTCAGGCGTCCTGCTCCGCTACTATGCTGCAGAGGGTCTGGTGCAAGGCCATACGATTCACGTG CTTGGCACCGACGAGCTTGTATGGCGAAGACAGCTTCCTGGTCTGGCCAAGGCGTCTACAACTGAAAACTCCAGC AAAATCTCTGTGCCGGCTGAAAAGATGAGGATCGCATGGAGATACGAGGCTCTGGGAGGCGCCAATAAGAAGGCC TCGTTACCCGCTGGGAATACTTCTGCCGAGCCCTTCTGCCACTCTTTTGATATGAGCAAGCATCTCGACGCTGCC GCAGTACAGGGCCAAGTTGAATTCACAAATTGCATCACGCACGCAGGAGGCGTTCCCTTTAGCTCTTTCCTTGAC CGCCTTGGCTCTGTCTTGCAGAAATCGCCACCGTCGTCCATACACCGAGTTCTTGTGCCTGGCCTGCTATCGCCG GCTCTGTATAGCTCAGCCGCTTGCCAACCGCAAAATGTATTACAGTTTCTACATGGCCTTAGAAATTTGCTGCGA AAGTTCCCCAACCAAGCTACGGCCATGTTGACTCTACCCCTTCCGCTTTATCCTCGTTCCTCGGGCCTCACCCGT TGGATGGAGCTGTTAGTCGACGGTGTCATGGAGCTGGTGCCTTTGAATCACCGTAGCCTCGTAACTACGGGCGAG GCTGACGCCAAAACTCAGGGGCTGTTGAAGATGCATAGCTATCCAGTATTTCATGAAAAAGGGGGCGGCTTGCAA GACGCCCTTTGCTGTCAAGACTTGGGCTTTAGCTTGAGCGCACTTGATGGCATTGTGATTTCTCCCTTGAGTCTT CCTCCTCTTGGCAGTGACGAAACGGCTACCAAGTCGTCGTCTGAAGTAGTTAAAGAGACGACACAACAGAAGCTT GAGTTTTAG |
| Transcript | >OphauG2|6022 ATGTCGTTTAGAAAGCGAAACACCGTCATTCGGGCGACAGGAAGCCAAAGGGACCCGGACAAGCCTTCCAATGCC ATCAACCATGGTCTCGTGAGCGCTGGTGTTCGGCCGTCGCCTCTTGATGGAAGGCCAACAACGTCAACGGGCACT GCTTCGCTGGACCAGTTATTAGCTGGACACGCCGGGCTGCCGCTTGCCTCCTCGCTCTTGCTGGAAGAGAACGGC ACGAGCGATTTCTCAGGCGTCCTGCTCCGCTACTATGCTGCAGAGGGTCTGGTGCAAGGCCATACGATTCACGTG CTTGGCACCGACGAGCTTGTATGGCGAAGACAGCTTCCTGGTCTGGCCAAGGCGTCTACAACTGAAAACTCCAGC AAAATCTCTGTGCCGGCTGAAAAGATGAGGATCGCATGGAGATACGAGGCTCTGGGAGGCGCCAATAAGAAGGCC TCGTTACCCGCTGGGAATACTTCTGCCGAGCCCTTCTGCCACTCTTTTGATATGAGCAAGCATCTCGACGCTGCC GCAGTACAGGGCCAAGTTGAATTCACAAATTGCATCACGCACGCAGGAGGCGTTCCCTTTAGCTCTTTCCTTGAC CGCCTTGGCTCTGTCTTGCAGAAATCGCCACCGTCGTCCATACACCGAGTTCTTGTGCCTGGCCTGCTATCGCCG GCTCTGTATAGCTCAGCCGCTTGCCAACCGCAAAATGTATTACAGTTTCTACATGGCCTTAGAAATTTGCTGCGA AAGTTCCCCAACCAAGCTACGGCCATGTTGACTCTACCCCTTCCGCTTTATCCTCGTTCCTCGGGCCTCACCCGT TGGATGGAGCTGTTAGTCGACGGTGTCATGGAGCTGGTGCCTTTGAATCACCGTAGCCTCGTAACTACGGGCGAG GCTGACGCCAAAACTCAGGGGCTGTTGAAGATGCATAGCTATCCAGTATTTCATGAAAAAGGGGGCGGCTTGCAA GACGCCCTTTGCTGTCAAGACTTGGGCTTTAGCTTGAGCGCACTTGATGGCATTGTGATTTCTCCCTTGAGTCTT CCTCCTCTTGGCAGTGACGAAACGGCTACCAAGTCGTCGTCTGAAGTAGTTAAAGAGACGACACAACAGAAGCTT GAGTTTTAG |
| Gene | >OphauG2|6022 ATGTCGTTTAGAAAGCGAAACACCGTCATTCGGGCGACAGGAAGCCAAAGGGACCCGGACAAGCCTTCCAATGCC ATCAACCATGGTCTCGTGAGCGCTGGTGTTCGGCCGTCGCCTCTTGATGGAAGGCCAACAACGTCAACGGGCACT GCTTCGCTGGACCAGTTATTAGCTGGACACGCCGGGCTGCCGCTTGCCTCCTCGCTCTTGCTGGAAGAGAACGGC ACGAGCGATTTCTCAGGCGTCCTGCTCCGCTACTATGCTGCAGAGGGTCTGGTGCAAGGCCATACGATTCACGTG CTTGGCACCGACGAGCTTGTATGGCGAAGACAGCTTCCTGGTCTGGCCAAGGCGTCTACAACTGAAAACTCCAGC AAAATCTCTGTGCCGGCTGAAAAGATGAGGATCGCATGGAGATACGAGGCTCTGGGAGGCGCCAATAAGAAGGCC TCGTTACCCGCTGGGAATACTTCTGCCGAGCCCTTCTGCCACTCTTTTGATATGAGCAAGCATCTCGACGCTGCC GCAGTACAGGGCCAAGTTGAATTCACAAATTGCATCACGCACGCAGGAGGCGTTCCCTTTAGCTCTTTCCTTGAC CGCCTTGGCTCTGTCTTGCAGAAATCGCCACCGTCGTCCATACACCGAGTTCTTGTGCCTGGCCTGCTATCGCCG GCTCTGTATAGCTCAGCCGCTTGCCAACCGCAAAATGTATTACAGTTTCTACATGGCCTTAGAAATTTGCTGCGA AAGTTCCCCAACCAAGCTACGGCCATGTTGACTCTACCCCTTCCGCTTTATCCTCGTTCCTCGGGCCTCACCCGT TGGATGGAGCTGTTAGTCGACGGTGTCATGGAGCTGGTGCCTTTGAATCACCGTAGCCTCGTAACTACGGGCGAG GCTGACGCCAAAACTCAGGGGCTGTTGAAGATGCATAGCTATCCAGTATTTCATGAAAAAGGGGGCGGCTTGCAA GACGCCCTTTGCTGTCAAGACTTGGGCTTTAGCTTGAGCGCACTTGATGGCATTGTGATTTCTCCCTTGAGTCTT CCTCCTCTTGGCAGTGACGAAACGGCTACCAAGTCGTCGTCTGAAGTAGTTAAAGAGACGACACAACAGAAGCTT GAGTTTTAG |