© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|600 |
| Gene name | |
| Location | Contig_1146:1556..3086 |
| Strand | + |
| Gene length (bp) | 1530 |
| Transcript length (bp) | 1530 |
| Coding sequence length (bp) | 1530 |
| Protein length (aa) | 510 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02373 | JmjC | JmjC domain, hydroxylase | 4.2E-19 | 312 | 414 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6B0I6|KDM4D_HUMAN | Lysine-specific demethylase 4D OS=Homo sapiens GN=KDM4D PE=1 SV=3 | 143 | 480 | 1.0E-23 |
| sp|Q3U2K5|KDM4D_MOUSE | Lysine-specific demethylase 4D OS=Mus musculus GN=Kdm4d PE=2 SV=2 | 143 | 420 | 3.0E-23 |
| sp|A1A5Q5|KDM4D_RAT | Lysine-specific demethylase 4D OS=Rattus norvegicus GN=Kdm4d PE=2 SV=1 | 143 | 420 | 2.0E-22 |
| sp|O94953|KDM4B_HUMAN | Lysine-specific demethylase 4B OS=Homo sapiens GN=KDM4B PE=1 SV=4 | 136 | 420 | 1.0E-21 |
| sp|Q91VY5|KDM4B_MOUSE | Lysine-specific demethylase 4B OS=Mus musculus GN=Kdm4b PE=2 SV=1 | 136 | 420 | 2.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6B0I6|KDM4D_HUMAN | Lysine-specific demethylase 4D OS=Homo sapiens GN=KDM4D PE=1 SV=3 | 143 | 480 | 1.0E-23 |
| sp|Q3U2K5|KDM4D_MOUSE | Lysine-specific demethylase 4D OS=Mus musculus GN=Kdm4d PE=2 SV=2 | 143 | 420 | 3.0E-23 |
| sp|A1A5Q5|KDM4D_RAT | Lysine-specific demethylase 4D OS=Rattus norvegicus GN=Kdm4d PE=2 SV=1 | 143 | 420 | 2.0E-22 |
| sp|O94953|KDM4B_HUMAN | Lysine-specific demethylase 4B OS=Homo sapiens GN=KDM4B PE=1 SV=4 | 136 | 420 | 1.0E-21 |
| sp|Q91VY5|KDM4B_MOUSE | Lysine-specific demethylase 4B OS=Mus musculus GN=Kdm4b PE=2 SV=1 | 136 | 420 | 2.0E-21 |
| sp|B2RXH2|KDM4E_HUMAN | Lysine-specific demethylase 4E OS=Homo sapiens GN=KDM4E PE=1 SV=1 | 141 | 485 | 9.0E-21 |
| sp|Q8VCD7|KDM4C_MOUSE | Lysine-specific demethylase 4C OS=Mus musculus GN=Kdm4c PE=1 SV=1 | 143 | 420 | 4.0E-19 |
| sp|Q8BW72|KDM4A_MOUSE | Lysine-specific demethylase 4A OS=Mus musculus GN=Kdm4a PE=1 SV=3 | 143 | 433 | 7.0E-19 |
| sp|Q9H3R0|KDM4C_HUMAN | Lysine-specific demethylase 4C OS=Homo sapiens GN=KDM4C PE=1 SV=2 | 143 | 420 | 1.0E-18 |
| sp|Q9V6L0|KDM4B_DROME | Probable lysine-specific demethylase 4B OS=Drosophila melanogaster GN=Kdm4B PE=3 SV=3 | 145 | 432 | 2.0E-18 |
| sp|O75164|KDM4A_HUMAN | Lysine-specific demethylase 4A OS=Homo sapiens GN=KDM4A PE=1 SV=2 | 143 | 433 | 2.0E-18 |
| sp|Q5RD88|KDM4A_PONAB | Lysine-specific demethylase 4A OS=Pongo abelii GN=KDM4A PE=2 SV=1 | 143 | 433 | 2.0E-18 |
| sp|Q9U297|KDM4_CAEEL | Lysine-specific demethylase 4 OS=Caenorhabditis elegans GN=jmjd-2 PE=3 SV=2 | 286 | 420 | 1.0E-17 |
| sp|Q9V333|KDM4A_DROME | Probable lysine-specific demethylase 4A OS=Drosophila melanogaster GN=Kdm4A PE=1 SV=1 | 295 | 420 | 9.0E-15 |
| sp|Q9STM3|REF6_ARATH | Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1 | 285 | 420 | 4.0E-13 |
| sp|P39956|RPH1_YEAST | DNA damage-responsive transcriptional repressor RPH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPH1 PE=1 SV=1 | 289 | 422 | 1.0E-12 |
| sp|Q30DN6|KDM5D_CANLF | Lysine-specific demethylase 5D OS=Canis lupus familiaris GN=KDM5D PE=2 SV=1 | 294 | 486 | 2.0E-12 |
| sp|Q62240|KDM5D_MOUSE | Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2 | 294 | 486 | 2.0E-12 |
| sp|Q3UXZ9|KDM5A_MOUSE | Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 | 296 | 476 | 6.0E-12 |
| sp|P29375|KDM5A_HUMAN | Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 | 296 | 476 | 7.0E-12 |
| sp|A1YVX4|KDM5C_PIG | Lysine-specific demethylase 5C OS=Sus scrofa GN=KDM5C PE=2 SV=1 | 293 | 508 | 8.0E-12 |
| sp|Q10RP4|SE14_ORYSJ | Lysine-specific demethylase SE14 OS=Oryza sativa subsp. japonica GN=SE14 PE=3 SV=2 | 296 | 420 | 8.0E-12 |
| sp|P41229|KDM5C_HUMAN | Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2 | 293 | 508 | 9.0E-12 |
| sp|P41230|KDM5C_MOUSE | Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=1 SV=4 | 294 | 486 | 9.0E-12 |
| sp|Q38JA7|KDM5C_CANLF | Lysine-specific demethylase 5C OS=Canis lupus familiaris GN=KDM5C PE=2 SV=1 | 293 | 508 | 1.0E-11 |
| sp|Q8GUI6|JMJ14_ARATH | Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1 | 257 | 420 | 1.0E-11 |
| sp|Q53WJ1|JM703_ORYSJ | Lysine-specific demethylase JMJ703 OS=Oryza sativa subsp. japonica GN=JMJ703 PE=1 SV=1 | 209 | 429 | 1.0E-11 |
| sp|Q5XUN4|KDM5D_PANTR | Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2 SV=1 | 293 | 429 | 2.0E-11 |
| sp|Q9BY66|KDM5D_HUMAN | Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2 | 293 | 429 | 2.0E-11 |
| sp|Q9VMJ7|KDM5_DROME | Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=1 | 273 | 420 | 4.0E-11 |
| sp|C0SUT9|JMJ16_ARATH | Putative lysine-specific demethylase JMJ16 OS=Arabidopsis thaliana GN=JMJ16 PE=2 SV=1 | 284 | 433 | 8.0E-11 |
| sp|O64752|JMJ15_ARATH | Lysine-specific demethylase JMJ15 OS=Arabidopsis thaliana GN=JMJ15 PE=2 SV=1 | 284 | 420 | 1.0E-10 |
| sp|Q336N8|JM706_ORYSJ | Lysine-specific demethylase JMJ706 OS=Oryza sativa subsp. japonica GN=JMJ706 PE=2 SV=1 | 284 | 422 | 1.0E-10 |
| sp|Q6BDA0|ELF6_ARATH | Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana GN=ELF6 PE=1 SV=1 | 296 | 420 | 1.0E-10 |
| sp|Q23541|KDM5_CAEEL | Lysine-specific demethylase rbr-2 OS=Caenorhabditis elegans GN=rbr-2 PE=1 SV=2 | 296 | 431 | 4.0E-10 |
| sp|Q5F3R2|KDM5B_CHICK | Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 | 294 | 429 | 5.0E-10 |
| sp|Q5N712|JM705_ORYSJ | Lysine-specific demethylase JMJ705 OS=Oryza sativa subsp. japonica GN=JMJ705 PE=1 SV=1 | 286 | 420 | 5.0E-10 |
| sp|Q61T02|KDM5_CAEBR | Lysine-specific demethylase rbr-2 OS=Caenorhabditis briggsae GN=rbr-2 PE=3 SV=2 | 296 | 420 | 5.0E-10 |
| sp|F4I6G4|JMJ18_ARATH | Lysine-specific demethylase JMJ18 OS=Arabidopsis thaliana GN=JMJ18 PE=2 SV=1 | 284 | 465 | 7.0E-10 |
| sp|Q9UGL1|KDM5B_HUMAN | Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 | 294 | 429 | 2.0E-09 |
| sp|Q80Y84|KDM5B_MOUSE | Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 | 294 | 429 | 2.0E-09 |
| sp|Q9US53|JMJ2_SCHPO | Jumonji/ARID domain-containing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=jmj2 PE=3 SV=1 | 296 | 420 | 3.0E-09 |
| sp|Q6IQX0|KD5BB_DANRE | Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 | 294 | 426 | 4.0E-09 |
| sp|P47156|JHD2_YEAST | Histone demethylase JHD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=JHD2 PE=1 SV=1 | 289 | 425 | 4.0E-08 |
| Orthofinder run ID | 4 |
| Orthogroup | 5886 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|600 MAVPDCLDTPPIVPQGQSVSNLGPAAPATTHDSTLARATASILCRDAAPSATLASHSLPPLCAPDTTPVPTQSSP RDCPQSMTCGASHATADAVSFAAPLEPPPTQSPAATDQHRPTPHVLETPIPPGFAIDHDFDHVNQHGILRLKPSR AQWEDFPSILAYARSLGVENDGCFKVTIPHGIHDLLPEKEPKTVPANAYKVKQMRRTTYWQVSTVPSDGEFSSAD SASQYSGTVNAAFKNLRRLFKTNKNRQMRNVRYRVDVPAWTAKQRREAGVPERSPIHPLKGDKLDLTKAIIPGIH TPYVYESGPSFGATFQIHAEDFRLASLNHLYKGRKIWVVVPATAVHVAEHALGRGEGCSQFMRHRAEFFFPDRLD KMGIPYRLVDQRPGETIVILPDAYHEGFSTGYTIAEAKNYADARWSPESYQPCEESCQLATAIPAAFMRPVAADE PRLDLCAAYGDCKPMLTPHEPKVELKRRLDEFLDDKRHASEQQQGAALAQESSVKRIKV* |
| Coding | >OphauG2|600 ATGGCTGTTCCTGATTGCCTCGACACCCCTCCAATCGTCCCCCAGGGCCAGTCCGTCAGCAACCTAGGCCCCGCC GCCCCAGCCACCACTCATGATTCAACTTTGGCCCGCGCCACTGCCTCAATCCTTTGTCGAGATGCTGCACCTAGT GCCACCCTTGCATCCCACTCCCTCCCTCCATTGTGCGCCCCGGACACCACCCCTGTTCCCACGCAATCGAGTCCT CGAGACTGTCCACAATCCATGACGTGTGGCGCGTCCCATGCCACTGCAGACGCCGTTTCTTTTGCCGCACCCCTG GAGCCGCCACCCACCCAAAGCCCTGCTGCTACCGACCAACACCGGCCAACACCCCACGTCCTGGAAACCCCCATT CCCCCCGGCTTTGCCATTGACCACGACTTCGATCACGTCAATCAACATGGCATCCTGCGCCTCAAGCCCTCCCGC GCCCAATGGGAAGACTTTCCATCCATTCTGGCCTATGCTCGAAGCCTCGGTGTCGAAAACGATGGCTGCTTCAAA GTCACTATCCCACACGGCATCCACGACTTGCTCCCGGAAAAGGAGCCCAAGACGGTTCCTGCAAACGCCTACAAA GTCAAGCAAATGCGAAGAACAACCTATTGGCAGGTTAGCACTGTGCCTTCTGACGGCGAGTTTAGCTCAGCAGAC TCTGCCTCCCAGTACTCGGGAACCGTCAATGCCGCCTTCAAGAACCTCCGAAGGCTCTTCAAGACCAACAAGAAC CGCCAAATGCGCAACGTGAGGTATAGGGTTGACGTGCCCGCCTGGACTGCAAAGCAAAGACGAGAGGCTGGTGTG CCGGAGCGAAGCCCCATTCATCCCCTCAAAGGCGACAAGCTGGACCTTACAAAGGCCATCATTCCGGGAATCCAC ACCCCCTACGTGTACGAGAGCGGCCCTTCTTTTGGCGCCACTTTTCAGATACATGCTGAAGATTTCCGCCTCGCC TCGCTAAACCATCTGTATAAAGGTCGCAAGATTTGGGTCGTGGTGCCCGCGACTGCTGTCCACGTCGCCGAGCAC GCACTTGGCCGTGGCGAGGGCTGCTCGCAGTTCATGCGCCACCGCGCCGAATTCTTCTTTCCAGACCGACTCGAC AAAATGGGCATCCCATATCGCCTAGTTGATCAGCGTCCCGGCGAAACCATAGTCATTCTCCCCGACGCCTATCAC GAGGGCTTTAGCACGGGATATACCATTGCCGAGGCCAAGAACTATGCCGATGCGCGCTGGAGCCCCGAGTCATAT CAGCCATGTGAAGAGAGTTGCCAGCTGGCAACTGCTATTCCAGCAGCCTTTATGCGCCCAGTTGCTGCCGACGAG CCTAGACTCGATCTCTGTGCGGCATATGGCGACTGCAAGCCGATGCTGACCCCGCACGAACCCAAAGTGGAACTA AAGAGAAGGCTAGATGAATTTCTTGACGACAAGCGACACGCCTCGGAACAGCAACAAGGAGCTGCTTTGGCGCAA GAATCGAGTGTTAAACGCATCAAGGTGTGA |
| Transcript | >OphauG2|600 ATGGCTGTTCCTGATTGCCTCGACACCCCTCCAATCGTCCCCCAGGGCCAGTCCGTCAGCAACCTAGGCCCCGCC GCCCCAGCCACCACTCATGATTCAACTTTGGCCCGCGCCACTGCCTCAATCCTTTGTCGAGATGCTGCACCTAGT GCCACCCTTGCATCCCACTCCCTCCCTCCATTGTGCGCCCCGGACACCACCCCTGTTCCCACGCAATCGAGTCCT CGAGACTGTCCACAATCCATGACGTGTGGCGCGTCCCATGCCACTGCAGACGCCGTTTCTTTTGCCGCACCCCTG GAGCCGCCACCCACCCAAAGCCCTGCTGCTACCGACCAACACCGGCCAACACCCCACGTCCTGGAAACCCCCATT CCCCCCGGCTTTGCCATTGACCACGACTTCGATCACGTCAATCAACATGGCATCCTGCGCCTCAAGCCCTCCCGC GCCCAATGGGAAGACTTTCCATCCATTCTGGCCTATGCTCGAAGCCTCGGTGTCGAAAACGATGGCTGCTTCAAA GTCACTATCCCACACGGCATCCACGACTTGCTCCCGGAAAAGGAGCCCAAGACGGTTCCTGCAAACGCCTACAAA GTCAAGCAAATGCGAAGAACAACCTATTGGCAGGTTAGCACTGTGCCTTCTGACGGCGAGTTTAGCTCAGCAGAC TCTGCCTCCCAGTACTCGGGAACCGTCAATGCCGCCTTCAAGAACCTCCGAAGGCTCTTCAAGACCAACAAGAAC CGCCAAATGCGCAACGTGAGGTATAGGGTTGACGTGCCCGCCTGGACTGCAAAGCAAAGACGAGAGGCTGGTGTG CCGGAGCGAAGCCCCATTCATCCCCTCAAAGGCGACAAGCTGGACCTTACAAAGGCCATCATTCCGGGAATCCAC ACCCCCTACGTGTACGAGAGCGGCCCTTCTTTTGGCGCCACTTTTCAGATACATGCTGAAGATTTCCGCCTCGCC TCGCTAAACCATCTGTATAAAGGTCGCAAGATTTGGGTCGTGGTGCCCGCGACTGCTGTCCACGTCGCCGAGCAC GCACTTGGCCGTGGCGAGGGCTGCTCGCAGTTCATGCGCCACCGCGCCGAATTCTTCTTTCCAGACCGACTCGAC AAAATGGGCATCCCATATCGCCTAGTTGATCAGCGTCCCGGCGAAACCATAGTCATTCTCCCCGACGCCTATCAC GAGGGCTTTAGCACGGGATATACCATTGCCGAGGCCAAGAACTATGCCGATGCGCGCTGGAGCCCCGAGTCATAT CAGCCATGTGAAGAGAGTTGCCAGCTGGCAACTGCTATTCCAGCAGCCTTTATGCGCCCAGTTGCTGCCGACGAG CCTAGACTCGATCTCTGTGCGGCATATGGCGACTGCAAGCCGATGCTGACCCCGCACGAACCCAAAGTGGAACTA AAGAGAAGGCTAGATGAATTTCTTGACGACAAGCGACACGCCTCGGAACAGCAACAAGGAGCTGCTTTGGCGCAA GAATCGAGTGTTAAACGCATCAAGGTGTGA |
| Gene | >OphauG2|600 ATGGCTGTTCCTGATTGCCTCGACACCCCTCCAATCGTCCCCCAGGGCCAGTCCGTCAGCAACCTAGGCCCCGCC GCCCCAGCCACCACTCATGATTCAACTTTGGCCCGCGCCACTGCCTCAATCCTTTGTCGAGATGCTGCACCTAGT GCCACCCTTGCATCCCACTCCCTCCCTCCATTGTGCGCCCCGGACACCACCCCTGTTCCCACGCAATCGAGTCCT CGAGACTGTCCACAATCCATGACGTGTGGCGCGTCCCATGCCACTGCAGACGCCGTTTCTTTTGCCGCACCCCTG GAGCCGCCACCCACCCAAAGCCCTGCTGCTACCGACCAACACCGGCCAACACCCCACGTCCTGGAAACCCCCATT CCCCCCGGCTTTGCCATTGACCACGACTTCGATCACGTCAATCAACATGGCATCCTGCGCCTCAAGCCCTCCCGC GCCCAATGGGAAGACTTTCCATCCATTCTGGCCTATGCTCGAAGCCTCGGTGTCGAAAACGATGGCTGCTTCAAA GTCACTATCCCACACGGCATCCACGACTTGCTCCCGGAAAAGGAGCCCAAGACGGTTCCTGCAAACGCCTACAAA GTCAAGCAAATGCGAAGAACAACCTATTGGCAGGTTAGCACTGTGCCTTCTGACGGCGAGTTTAGCTCAGCAGAC TCTGCCTCCCAGTACTCGGGAACCGTCAATGCCGCCTTCAAGAACCTCCGAAGGCTCTTCAAGACCAACAAGAAC CGCCAAATGCGCAACGTGAGGTATAGGGTTGACGTGCCCGCCTGGACTGCAAAGCAAAGACGAGAGGCTGGTGTG CCGGAGCGAAGCCCCATTCATCCCCTCAAAGGCGACAAGCTGGACCTTACAAAGGCCATCATTCCGGGAATCCAC ACCCCCTACGTGTACGAGAGCGGCCCTTCTTTTGGCGCCACTTTTCAGATACATGCTGAAGATTTCCGCCTCGCC TCGCTAAACCATCTGTATAAAGGTCGCAAGATTTGGGTCGTGGTGCCCGCGACTGCTGTCCACGTCGCCGAGCAC GCACTTGGCCGTGGCGAGGGCTGCTCGCAGTTCATGCGCCACCGCGCCGAATTCTTCTTTCCAGACCGACTCGAC AAAATGGGCATCCCATATCGCCTAGTTGATCAGCGTCCCGGCGAAACCATAGTCATTCTCCCCGACGCCTATCAC GAGGGCTTTAGCACGGGATATACCATTGCCGAGGCCAAGAACTATGCCGATGCGCGCTGGAGCCCCGAGTCATAT CAGCCATGTGAAGAGAGTTGCCAGCTGGCAACTGCTATTCCAGCAGCCTTTATGCGCCCAGTTGCTGCCGACGAG CCTAGACTCGATCTCTGTGCGGCATATGGCGACTGCAAGCCGATGCTGACCCCGCACGAACCCAAAGTGGAACTA AAGAGAAGGCTAGATGAATTTCTTGACGACAAGCGACACGCCTCGGAACAGCAACAAGGAGCTGCTTTGGCGCAA GAATCGAGTGTTAAACGCATCAAGGTGTGA |