© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauG2|5998 |
| Gene name | |
| Location | Contig_589:514..1095 |
| Strand | + |
| Gene length (bp) | 581 |
| Transcript length (bp) | 435 |
| Coding sequence length (bp) | 435 |
| Protein length (aa) | 145 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00172 | Zn_clus | Fungal Zn(2)-Cys(6) binuclear cluster domain | 1.4E-08 | 55 | 93 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P52959|CTF1B_FUSSO | Cutinase transcription factor 1 beta OS=Fusarium solani subsp. pisi GN=CTF1-BETA PE=2 SV=1 | 16 | 97 | 1.0E-28 |
| sp|P36598|THI1_SCHPO | Thiamine repressible genes regulatory protein thi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=thi1 PE=1 SV=2 | 26 | 106 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Yes |
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0050789 | regulation of biological process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:0005488 | binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0003700 | DNA-binding transcription factor activity | No |
| GO:0043169 | cation binding | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5998 MTLDTTSMALCAPTTGNSAPPTGSPDLDSIEGPKKRHAPSGEAPPHKVTKRRAARACVSCRARKVRCDVVEGAPC GNCRWDNVECIVQESRRRKHWLAAWELELAQALRHNCAADPATSRLLLPPTLCQMETVAAPDARAVFQP* |
| Coding | >OphauG2|5998 ATGACGCTCGACACAACCTCGATGGCTCTCTGCGCGCCAACCACGGGCAACAGCGCACCACCAACGGGCTCACCG GACCTGGATTCGATCGAGGGCCCCAAGAAACGTCATGCTCCAAGCGGCGAGGCGCCGCCACACAAGGTGACGAAG CGACGTGCTGCTCGAGCCTGCGTCTCGTGTCGGGCGCGCAAGGTGCGGTGTGACGTGGTGGAGGGAGCGCCATGC GGCAACTGTCGCTGGGACAATGTCGAGTGCATTGTCCAAGAAAGCCGGCGTCGAAAACACTGGTTGGCGGCGTGG GAGCTGGAGCTGGCCCAGGCGCTGAGACACAATTGCGCTGCAGACCCAGCAACATCCAGGTTGCTGCTGCCACCA ACGCTGTGTCAAATGGAAACGGTAGCGGCGCCAGACGCACGAGCAGTATTTCAACCGTAG |
| Transcript | >OphauG2|5998 ATGACGCTCGACACAACCTCGATGGCTCTCTGCGCGCCAACCACGGGCAACAGCGCACCACCAACGGGCTCACCG GACCTGGATTCGATCGAGGGCCCCAAGAAACGTCATGCTCCAAGCGGCGAGGCGCCGCCACACAAGGTGACGAAG CGACGTGCTGCTCGAGCCTGCGTCTCGTGTCGGGCGCGCAAGGTGCGGTGTGACGTGGTGGAGGGAGCGCCATGC GGCAACTGTCGCTGGGACAATGTCGAGTGCATTGTCCAAGAAAGCCGGCGTCGAAAACACTGGTTGGCGGCGTGG GAGCTGGAGCTGGCCCAGGCGCTGAGACACAATTGCGCTGCAGACCCAGCAACATCCAGGTTGCTGCTGCCACCA ACGCTGTGTCAAATGGAAACGGTAGCGGCGCCAGACGCACGAGCAGTATTTCAACCGTAG |
| Gene | >OphauG2|5998 ATGACGCTCGACACAACCTCGATGGCTCTCTGCGCGCCAACCACGGGCAACAGCGCACCACCAACGGGCTCACCG GACCTGGATTCGATCGAGGGCCCCAAGAAACGTCATGCTCCAAGCGGCGAGGCGCCGCCACACAAGGTGACGAAG CGACGTGCTGCTCGAGCCTGCGTCTCGTGTCGGGCGCGCAAGGTGCGGTGTGACGTGGTGGAGGGAGCGCCATGC GGCAACTGTCGCTGGGACAATGTCGAGGTTTGTCGGCGACCTCTGCCCACCGGTGCATGCCCAAAATTGACCTGT TACTGATGGTCAACACTCAACAGTGCATTGTCCAAGAAAGCCGGCGTCGAAAGTAAGTCACTTACTTGACATGTG AACATGTCGCGCGTGGACCATGCAAGAAAGCACTAACGCATGACGCAGAAAGACACTGGTTGGCGGCGTGGGAGC TGGAGCTGGCCCAGGCGCTGAGACACAATTGCGCTGCAGACCCAGCAACATCCAGGTTGCTGCTGCCACCAACGC TGTGTCAAATGGAAACGGTAGCGGCGCCAGACGCACGAGCAGTATTTCAACCGTAG |