© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauG2|580 |
| Gene name | |
| Location | Contig_114:10282..12473 |
| Strand | - |
| Gene length (bp) | 2191 |
| Transcript length (bp) | 2133 |
| Coding sequence length (bp) | 2133 |
| Protein length (aa) | 711 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07713 | DUF1604 | Protein of unknown function (DUF1604) | 9.8E-40 | 38 | 123 |
| PF01585 | G-patch | G-patch domain | 7.7E-06 | 148 | 169 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q24K12|GPTC1_BOVIN | G patch domain-containing protein 1 OS=Bos taurus GN=GPATCH1 PE=2 SV=1 | 8 | 619 | 2.0E-55 |
| sp|Q9BRR8|GPTC1_HUMAN | G patch domain-containing protein 1 OS=Homo sapiens GN=GPATCH1 PE=1 SV=1 | 11 | 619 | 7.0E-53 |
| sp|Q9DBM1|GPTC1_MOUSE | G patch domain-containing protein 1 OS=Mus musculus GN=Gpatch1 PE=2 SV=1 | 8 | 607 | 7.0E-52 |
| sp|Q9HE07|YK96_SCHPO | Uncharacterized protein C20H4.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20H4.06c PE=4 SV=1 | 5 | 607 | 3.0E-46 |
| sp|Q67VW6|TGHH_ORYSJ | G patch domain-containing protein TGH homolog OS=Oryza sativa subsp. japonica GN=Os06g0489200 PE=2 SV=1 | 18 | 284 | 1.0E-31 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q24K12|GPTC1_BOVIN | G patch domain-containing protein 1 OS=Bos taurus GN=GPATCH1 PE=2 SV=1 | 8 | 619 | 2.0E-55 |
| sp|Q9BRR8|GPTC1_HUMAN | G patch domain-containing protein 1 OS=Homo sapiens GN=GPATCH1 PE=1 SV=1 | 11 | 619 | 7.0E-53 |
| sp|Q9DBM1|GPTC1_MOUSE | G patch domain-containing protein 1 OS=Mus musculus GN=Gpatch1 PE=2 SV=1 | 8 | 607 | 7.0E-52 |
| sp|Q9HE07|YK96_SCHPO | Uncharacterized protein C20H4.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20H4.06c PE=4 SV=1 | 5 | 607 | 3.0E-46 |
| sp|Q67VW6|TGHH_ORYSJ | G patch domain-containing protein TGH homolog OS=Oryza sativa subsp. japonica GN=Os06g0489200 PE=2 SV=1 | 18 | 284 | 1.0E-31 |
| sp|B8B2G4|TGHH_ORYSI | G patch domain-containing protein TGH homolog OS=Oryza sativa subsp. indica GN=OsI_23032 PE=3 SV=1 | 18 | 284 | 1.0E-31 |
| sp|Q8GXN9|TGH_ARATH | G patch domain-containing protein TGH OS=Arabidopsis thaliana GN=TGH PE=2 SV=1 | 18 | 368 | 3.0E-28 |
| sp|Q9VUA0|GPTC1_DROME | G patch domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG8833 PE=2 SV=1 | 21 | 215 | 2.0E-27 |
| sp|Q21827|GPTC1_CAEEL | G patch domain-containing protein 1 homolog OS=Caenorhabditis elegans GN=R07E5.1 PE=1 SV=1 | 18 | 407 | 3.0E-27 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0006397 | mRNA processing | Yes |
| GO:0005488 | binding | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0009987 | cellular process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|580 MPFKRSRSTFETDHHVSFAVYGSPLPQDDETRDDGSYLPLWKQEVRDERGRKRLHGAFTGGFSAGYFNTVGSKEG WTPSAFVSSRANRHKNTASAQQRAEDYMDEEDLADKAEADKIQTSEAFAGMGSSVQSETSHDVLGSLLKATGNTI GLRLLRRMGWKDGQGIGPKVRRTARLDPDHGTVDSQAEMHLFAPDDVPMIQFSRKKDRKGLGYRGEAKLQGFGSH GYAINDDQDDDNEGEGFESDGSQLHSLERSKPRRAAPGAFGVGVLNDTGSDDENPYEMGPKIKYNRVLGGDKKKK QKKRVSSVANPTFAKTPKYVPTMGRIEDRLGRSHDGRPPLRGFVMAKLSEDFGSLMSRYAPPPVPLDWKTALEPS KESIGNLPYISTADAAKASKYNPQSRAAVLGEQALPGKSVFDYLSVEARDKIAAASGKTNLPQAGGDDDEETEEW TGVRHKALWDQVPKLDGESAAAALARISNGPYADDEAKRGRYRRYLEQVSGGEVALAQKPAFMAEQDFVQELHEF YNCARIFKPMTGFMASRFTTSKAAKNFIGNNAAAEVLSRPEAKMADGAEEAAKMGMFGHLTRSVVDFYPTRLLCK RFNVRAPAHARPDNMPDGNDSKRAPGCMSNPVRYDAAPLSPPRHDGGPDQTRGHGKSGHGVAHGVTRGAVSPEQT VVEAIDAHRNEAVEAAAANAEVLGAIFGESDDGSE* |
| Coding | >OphauG2|580 ATGCCGTTTAAGCGCTCCCGCTCGACTTTCGAAACTGACCACCATGTTTCGTTTGCCGTCTACGGGTCCCCTCTG CCTCAGGATGACGAGACCCGCGATGACGGCTCATACTTGCCATTGTGGAAACAAGAAGTTCGAGACGAGAGGGGT CGCAAGCGTCTTCATGGTGCTTTTACGGGAGGCTTCAGCGCCGGTTACTTCAATACAGTCGGCTCCAAGGAGGGA TGGACCCCGTCAGCCTTTGTCTCAAGTCGCGCGAACCGCCACAAAAATACAGCATCGGCTCAACAGCGTGCTGAA GACTATATGGACGAAGAGGACCTTGCTGACAAGGCCGAGGCGGACAAGATACAAACTTCTGAGGCTTTTGCCGGT ATGGGTTCCTCGGTTCAAAGCGAAACGTCTCATGATGTGCTTGGTAGTCTGTTAAAGGCAACCGGCAACACAATT GGCCTTCGCTTATTGCGACGAATGGGATGGAAAGATGGCCAGGGCATAGGACCCAAGGTTCGTCGAACCGCACGG TTAGACCCAGACCATGGCACTGTCGACTCGCAAGCCGAGATGCATCTCTTTGCTCCTGACGATGTCCCCATGATA CAATTTTCACGCAAGAAGGATCGCAAAGGACTCGGGTATCGGGGAGAGGCAAAGCTCCAGGGGTTTGGCAGCCAT GGATATGCTATCAATGATGATCAAGATGATGACAATGAAGGGGAGGGTTTTGAGAGCGATGGTTCGCAGCTCCAT TCTCTTGAGCGTAGCAAGCCGAGAAGAGCTGCCCCAGGTGCCTTTGGTGTCGGCGTATTGAACGACACGGGCTCC GATGACGAGAACCCTTACGAAATGGGGCCCAAGATCAAGTACAACAGAGTATTGGGTGGGGACAAAAAGAAAAAG CAAAAGAAGAGGGTGTCATCTGTTGCCAACCCCACGTTTGCCAAGACGCCAAAATACGTTCCGACGATGGGTAGA ATCGAGGACAGACTGGGCCGCTCTCATGATGGACGGCCACCCCTACGCGGCTTCGTTATGGCCAAGTTGAGTGAA GATTTTGGGTCACTCATGTCGCGCTATGCACCTCCACCAGTGCCCCTCGACTGGAAAACAGCACTTGAGCCGTCC AAGGAATCAATTGGCAATTTACCATATATTTCAACGGCAGATGCGGCCAAAGCTTCAAAGTACAACCCTCAATCT CGGGCCGCAGTGCTTGGGGAACAAGCTCTACCAGGAAAGTCTGTCTTTGACTATCTATCTGTCGAAGCGCGAGAC AAGATTGCCGCTGCTTCTGGGAAGACTAATCTGCCACAAGCAGGAGGAGATGATGATGAAGAGACTGAAGAATGG ACTGGAGTGCGTCACAAGGCCCTCTGGGACCAAGTTCCCAAGCTAGATGGGGAGTCGGCGGCGGCAGCTCTGGCT AGAATTTCCAACGGACCATATGCCGATGACGAGGCCAAGCGGGGGCGATATAGACGCTATCTGGAGCAGGTTTCT GGTGGTGAAGTGGCTCTTGCGCAAAAACCAGCCTTCATGGCAGAGCAAGACTTTGTACAGGAGCTACACGAGTTT TACAATTGCGCCCGCATCTTCAAACCCATGACAGGATTCATGGCGTCCCGCTTCACCACATCCAAGGCGGCCAAA AACTTTATTGGCAACAATGCCGCGGCGGAGGTGCTTTCCAGGCCGGAAGCAAAGATGGCTGACGGCGCCGAAGAG GCGGCCAAGATGGGCATGTTTGGTCACTTGACACGGTCTGTTGTCGATTTCTACCCCACGCGGCTATTGTGTAAG CGTTTCAATGTCAGGGCGCCGGCACATGCCAGGCCAGACAACATGCCGGACGGCAACGACAGCAAGAGAGCGCCA GGATGCATGTCAAATCCTGTGCGATATGACGCAGCGCCACTGTCACCGCCACGGCATGATGGCGGGCCAGATCAG ACACGGGGGCATGGCAAATCAGGTCACGGCGTCGCACATGGTGTGACGCGGGGGGCTGTATCGCCAGAGCAGACA GTGGTTGAAGCAATTGATGCCCATCGCAACGAAGCCGTCGAGGCAGCAGCGGCAAACGCCGAGGTGCTTGGGGCA ATATTCGGTGAGAGTGACGACGGGAGCGAATAG |
| Transcript | >OphauG2|580 ATGCCGTTTAAGCGCTCCCGCTCGACTTTCGAAACTGACCACCATGTTTCGTTTGCCGTCTACGGGTCCCCTCTG CCTCAGGATGACGAGACCCGCGATGACGGCTCATACTTGCCATTGTGGAAACAAGAAGTTCGAGACGAGAGGGGT CGCAAGCGTCTTCATGGTGCTTTTACGGGAGGCTTCAGCGCCGGTTACTTCAATACAGTCGGCTCCAAGGAGGGA TGGACCCCGTCAGCCTTTGTCTCAAGTCGCGCGAACCGCCACAAAAATACAGCATCGGCTCAACAGCGTGCTGAA GACTATATGGACGAAGAGGACCTTGCTGACAAGGCCGAGGCGGACAAGATACAAACTTCTGAGGCTTTTGCCGGT ATGGGTTCCTCGGTTCAAAGCGAAACGTCTCATGATGTGCTTGGTAGTCTGTTAAAGGCAACCGGCAACACAATT GGCCTTCGCTTATTGCGACGAATGGGATGGAAAGATGGCCAGGGCATAGGACCCAAGGTTCGTCGAACCGCACGG TTAGACCCAGACCATGGCACTGTCGACTCGCAAGCCGAGATGCATCTCTTTGCTCCTGACGATGTCCCCATGATA CAATTTTCACGCAAGAAGGATCGCAAAGGACTCGGGTATCGGGGAGAGGCAAAGCTCCAGGGGTTTGGCAGCCAT GGATATGCTATCAATGATGATCAAGATGATGACAATGAAGGGGAGGGTTTTGAGAGCGATGGTTCGCAGCTCCAT TCTCTTGAGCGTAGCAAGCCGAGAAGAGCTGCCCCAGGTGCCTTTGGTGTCGGCGTATTGAACGACACGGGCTCC GATGACGAGAACCCTTACGAAATGGGGCCCAAGATCAAGTACAACAGAGTATTGGGTGGGGACAAAAAGAAAAAG CAAAAGAAGAGGGTGTCATCTGTTGCCAACCCCACGTTTGCCAAGACGCCAAAATACGTTCCGACGATGGGTAGA ATCGAGGACAGACTGGGCCGCTCTCATGATGGACGGCCACCCCTACGCGGCTTCGTTATGGCCAAGTTGAGTGAA GATTTTGGGTCACTCATGTCGCGCTATGCACCTCCACCAGTGCCCCTCGACTGGAAAACAGCACTTGAGCCGTCC AAGGAATCAATTGGCAATTTACCATATATTTCAACGGCAGATGCGGCCAAAGCTTCAAAGTACAACCCTCAATCT CGGGCCGCAGTGCTTGGGGAACAAGCTCTACCAGGAAAGTCTGTCTTTGACTATCTATCTGTCGAAGCGCGAGAC AAGATTGCCGCTGCTTCTGGGAAGACTAATCTGCCACAAGCAGGAGGAGATGATGATGAAGAGACTGAAGAATGG ACTGGAGTGCGTCACAAGGCCCTCTGGGACCAAGTTCCCAAGCTAGATGGGGAGTCGGCGGCGGCAGCTCTGGCT AGAATTTCCAACGGACCATATGCCGATGACGAGGCCAAGCGGGGGCGATATAGACGCTATCTGGAGCAGGTTTCT GGTGGTGAAGTGGCTCTTGCGCAAAAACCAGCCTTCATGGCAGAGCAAGACTTTGTACAGGAGCTACACGAGTTT TACAATTGCGCCCGCATCTTCAAACCCATGACAGGATTCATGGCGTCCCGCTTCACCACATCCAAGGCGGCCAAA AACTTTATTGGCAACAATGCCGCGGCGGAGGTGCTTTCCAGGCCGGAAGCAAAGATGGCTGACGGCGCCGAAGAG GCGGCCAAGATGGGCATGTTTGGTCACTTGACACGGTCTGTTGTCGATTTCTACCCCACGCGGCTATTGTGTAAG CGTTTCAATGTCAGGGCGCCGGCACATGCCAGGCCAGACAACATGCCGGACGGCAACGACAGCAAGAGAGCGCCA GGATGCATGTCAAATCCTGTGCGATATGACGCAGCGCCACTGTCACCGCCACGGCATGATGGCGGGCCAGATCAG ACACGGGGGCATGGCAAATCAGGTCACGGCGTCGCACATGGTGTGACGCGGGGGGCTGTATCGCCAGAGCAGACA GTGGTTGAAGCAATTGATGCCCATCGCAACGAAGCCGTCGAGGCAGCAGCGGCAAACGCCGAGGTGCTTGGGGCA ATATTCGGTGAGAGTGACGACGGGAGCGAATAG |
| Gene | >OphauG2|580 ATGCCGTTTAAGCGCTCCCGCTCGACTTTCGAAACTGACCACCATGTTTCGTTTGCCGTCTACGGGTCCCCTCTG CCTCAGGATGACGAGACCCGCGATGACGGCTCATACTTGCCATTGTGGAAACAAGAAGTTCGAGACGAGAGGGGT CGCAAGCGTCTTCATGGTGCTTTTACGGGAGGCTTCAGCGCCGGGTGCGTGCACTCGCCATGGTTTCCAGCTATG CATGTCGTGGCTAATCGCTCGAGGCAGTTACTTCAATACAGTCGGCTCCAAGGAGGGATGGACCCCGTCAGCCTT TGTCTCAAGTCGCGCGAACCGCCACAAAAATACAGCATCGGCTCAACAGCGTGCTGAAGACTATATGGACGAAGA GGACCTTGCTGACAAGGCCGAGGCGGACAAGATACAAACTTCTGAGGCTTTTGCCGGTATGGGTTCCTCGGTTCA AAGCGAAACGTCTCATGATGTGCTTGGTAGTCTGTTAAAGGCAACCGGCAACACAATTGGCCTTCGCTTATTGCG ACGAATGGGATGGAAAGATGGCCAGGGCATAGGACCCAAGGTTCGTCGAACCGCACGGTTAGACCCAGACCATGG CACTGTCGACTCGCAAGCCGAGATGCATCTCTTTGCTCCTGACGATGTCCCCATGATACAATTTTCACGCAAGAA GGATCGCAAAGGACTCGGGTATCGGGGAGAGGCAAAGCTCCAGGGGTTTGGCAGCCATGGATATGCTATCAATGA TGATCAAGATGATGACAATGAAGGGGAGGGTTTTGAGAGCGATGGTTCGCAGCTCCATTCTCTTGAGCGTAGCAA GCCGAGAAGAGCTGCCCCAGGTGCCTTTGGTGTCGGCGTATTGAACGACACGGGCTCCGATGACGAGAACCCTTA CGAAATGGGGCCCAAGATCAAGTACAACAGAGTATTGGGTGGGGACAAAAAGAAAAAGCAAAAGAAGAGGGTGTC ATCTGTTGCCAACCCCACGTTTGCCAAGACGCCAAAATACGTTCCGACGATGGGTAGAATCGAGGACAGACTGGG CCGCTCTCATGATGGACGGCCACCCCTACGCGGCTTCGTTATGGCCAAGTTGAGTGAAGATTTTGGGTCACTCAT GTCGCGCTATGCACCTCCACCAGTGCCCCTCGACTGGAAAACAGCACTTGAGCCGTCCAAGGAATCAATTGGCAA TTTACCATATATTTCAACGGCAGATGCGGCCAAAGCTTCAAAGTACAACCCTCAATCTCGGGCCGCAGTGCTTGG GGAACAAGCTCTACCAGGAAAGTCTGTCTTTGACTATCTATCTGTCGAAGCGCGAGACAAGATTGCCGCTGCTTC TGGGAAGACTAATCTGCCACAAGCAGGAGGAGATGATGATGAAGAGACTGAAGAATGGACTGGAGTGCGTCACAA GGCCCTCTGGGACCAAGTTCCCAAGCTAGATGGGGAGTCGGCGGCGGCAGCTCTGGCTAGAATTTCCAACGGACC ATATGCCGATGACGAGGCCAAGCGGGGGCGATATAGACGCTATCTGGAGCAGGTTTCTGGTGGTGAAGTGGCTCT TGCGCAAAAACCAGCCTTCATGGCAGAGCAAGACTTTGTACAGGAGCTACACGAGTTTTACAATTGCGCCCGCAT CTTCAAACCCATGACAGGATTCATGGCGTCCCGCTTCACCACATCCAAGGCGGCCAAAAACTTTATTGGCAACAA TGCCGCGGCGGAGGTGCTTTCCAGGCCGGAAGCAAAGATGGCTGACGGCGCCGAAGAGGCGGCCAAGATGGGCAT GTTTGGTCACTTGACACGGTCTGTTGTCGATTTCTACCCCACGCGGCTATTGTGTAAGCGTTTCAATGTCAGGGC GCCGGCACATGCCAGGCCAGACAACATGCCGGACGGCAACGACAGCAAGAGAGCGCCAGGATGCATGTCAAATCC TGTGCGATATGACGCAGCGCCACTGTCACCGCCACGGCATGATGGCGGGCCAGATCAGACACGGGGGCATGGCAA ATCAGGTCACGGCGTCGCACATGGTGTGACGCGGGGGGCTGTATCGCCAGAGCAGACAGTGGTTGAAGCAATTGA TGCCCATCGCAACGAAGCCGTCGAGGCAGCAGCGGCAAACGCCGAGGTGCTTGGGGCAATATTCGGTGAGAGTGA CGACGGGAGCGAATAG |