Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|5796
Gene name
Location	Contig_555:5542..6781
Strand	+
Gene length (bp)	1239
Transcript length (bp)	1128
Coding sequence length (bp)	1128
Protein length (aa)	376

Overview

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	5.1E-07	301	355

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O43120\|UAP2_SCHPO	Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1	81	369	1.0E-60
sp\|Q8BGC0\|HTSF1_MOUSE	HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1 SV=1	28	362	2.0E-33
sp\|O43719\|HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	37	362	2.0E-30
sp\|Q5RB63\|HTSF1_PONAB	HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2 SV=1	37	362	3.0E-30
sp\|P53830\|CUS2_YEAST	Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS2 PE=1 SV=1	110	375	3.0E-23

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O43120\|UAP2_SCHPO	Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1	81	369	1.0E-60
sp\|Q8BGC0\|HTSF1_MOUSE	HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1 SV=1	28	362	2.0E-33
sp\|O43719\|HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	37	362	2.0E-30
sp\|Q5RB63\|HTSF1_PONAB	HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2 SV=1	37	362	3.0E-30
sp\|P53830\|CUS2_YEAST	Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS2 PE=1 SV=1	110	375	3.0E-23
sp\|O13845\|RSD1_SCHPO	RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rsd1 PE=1 SV=2	150	359	3.0E-06

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GO

GO Term	Description	Terminal node
GO:0003723	RNA binding	Yes
GO:0003674	molecular_function	No
GO:1901363	heterocyclic compound binding	No
GO:0005488	binding	No
GO:0003676	nucleic acid binding	No
GO:0097159	organic cyclic compound binding	No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID	4
Orthogroup	1308
Change Orthofinder run

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|5796 (this protein)
Ophiocordyceps australis map64 (Brazil)	OphauB2\|2167
Ophiocordyceps camponoti-floridani	Ophcf2\|07244
Ophiocordyceps camponoti-rufipedis	Ophun1\|5381
Ophiocordyceps kimflemingae	Ophio5\|2937
Ophiocordyceps subramaniannii	Hirsu2\|10641

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|5796 MEIDFPTKLDDFDADERISYSKLDDKYIGVRDDGVEFEFDLELKRWLPITTDDAEDTGDALDVGGCSLDGLGDGA QRKRKQGADKGSENADSSQAARPSKKTKAPPKPKQNTAVYVTGLPPDASVPEIHDVFSRKGGLIAEEIDSGAPRI KLYRDDAGHFKGDALIVFFKPDSVRMAIMLLDDSYFRYTPSGQGQGKIHVQEADSSYKKIQQHQQDANAAIPPSD AARNTPDVRRPKRDKDRQKIIRKTQKLDAKLADWSDDEDDRFPAVNDAKSSRTVVLRQMFRIFELEEDPAAILDI KQDIREECSKLGTVTNVVLYDQEPEGIVTVRFHEADAATACIKAMNGRPFDGRVVEASLGTGKERFRRSDNKEHD *
Coding	>OphauG2\|5796 ATGGAAATCGATTTTCCAACCAAACTCGATGATTTTGATGCAGACGAGCGCATCTCCTACTCCAAGCTCGATGAC AAGTACATTGGTGTACGCGACGATGGTGTCGAGTTTGAATTTGACCTCGAGCTGAAGCGGTGGCTGCCAATCACT ACGGACGATGCAGAAGACACAGGCGACGCGTTGGATGTTGGGGGCTGTAGCCTAGATGGCCTAGGCGATGGCGCT CAGAGAAAGCGAAAGCAAGGCGCTGACAAGGGAAGCGAGAATGCCGATTCCTCTCAGGCCGCCCGGCCAAGTAAA AAGACAAAGGCGCCGCCCAAGCCCAAGCAGAATACGGCAGTGTACGTGACGGGCCTGCCGCCAGACGCATCCGTG CCCGAAATCCACGACGTCTTCTCCCGCAAGGGTGGCCTCATCGCCGAGGAAATCGATAGCGGTGCCCCACGCATC AAGCTCTACAGGGACGATGCCGGACACTTCAAGGGTGATGCGCTCATTGTCTTTTTCAAGCCTGACAGCGTGCGC ATGGCCATTATGCTTCTCGACGACAGTTATTTTAGATACACGCCCAGTGGCCAGGGCCAAGGCAAGATACACGTC CAAGAAGCCGACTCGAGCTACAAAAAGATACAGCAGCACCAGCAAGACGCCAACGCTGCAATACCCCCCTCGGAT GCCGCGCGAAATACGCCAGATGTACGACGGCCTAAGAGGGACAAGGATCGGCAAAAAATCATCCGCAAGACACAG AAACTCGACGCCAAACTGGCTGATTGGAGCGACGACGAGGATGACCGATTCCCGGCTGTTAATGACGCCAAGAGT TCCAGGACGGTTGTCCTCCGTCAAATGTTCCGCATCTTTGAACTTGAAGAGGATCCAGCAGCGATTCTGGACATC AAGCAAGATATTCGCGAAGAGTGTTCCAAGCTGGGCACAGTAACTAATGTGGTACTTTATGACCAAGAGCCAGAA GGCATTGTCACTGTTCGGTTTCACGAGGCAGACGCTGCCACGGCGTGTATCAAGGCCATGAACGGACGGCCCTTT GACGGGCGCGTTGTCGAGGCTTCCCTCGGCACAGGCAAAGAAAGATTTAGAAGGAGTGACAACAAGGAGCACGAT TGA
Transcript	>OphauG2\|5796 ATGGAAATCGATTTTCCAACCAAACTCGATGATTTTGATGCAGACGAGCGCATCTCCTACTCCAAGCTCGATGAC AAGTACATTGGTGTACGCGACGATGGTGTCGAGTTTGAATTTGACCTCGAGCTGAAGCGGTGGCTGCCAATCACT ACGGACGATGCAGAAGACACAGGCGACGCGTTGGATGTTGGGGGCTGTAGCCTAGATGGCCTAGGCGATGGCGCT CAGAGAAAGCGAAAGCAAGGCGCTGACAAGGGAAGCGAGAATGCCGATTCCTCTCAGGCCGCCCGGCCAAGTAAA AAGACAAAGGCGCCGCCCAAGCCCAAGCAGAATACGGCAGTGTACGTGACGGGCCTGCCGCCAGACGCATCCGTG CCCGAAATCCACGACGTCTTCTCCCGCAAGGGTGGCCTCATCGCCGAGGAAATCGATAGCGGTGCCCCACGCATC AAGCTCTACAGGGACGATGCCGGACACTTCAAGGGTGATGCGCTCATTGTCTTTTTCAAGCCTGACAGCGTGCGC ATGGCCATTATGCTTCTCGACGACAGTTATTTTAGATACACGCCCAGTGGCCAGGGCCAAGGCAAGATACACGTC CAAGAAGCCGACTCGAGCTACAAAAAGATACAGCAGCACCAGCAAGACGCCAACGCTGCAATACCCCCCTCGGAT GCCGCGCGAAATACGCCAGATGTACGACGGCCTAAGAGGGACAAGGATCGGCAAAAAATCATCCGCAAGACACAG AAACTCGACGCCAAACTGGCTGATTGGAGCGACGACGAGGATGACCGATTCCCGGCTGTTAATGACGCCAAGAGT TCCAGGACGGTTGTCCTCCGTCAAATGTTCCGCATCTTTGAACTTGAAGAGGATCCAGCAGCGATTCTGGACATC AAGCAAGATATTCGCGAAGAGTGTTCCAAGCTGGGCACAGTAACTAATGTGGTACTTTATGACCAAGAGCCAGAA GGCATTGTCACTGTTCGGTTTCACGAGGCAGACGCTGCCACGGCGTGTATCAAGGCCATGAACGGACGGCCCTTT GACGGGCGCGTTGTCGAGGCTTCCCTCGGCACAGGCAAAGAAAGATTTAGAAGGAGTGACAACAAGGAGCACGAT TGA
Gene	>OphauG2\|5796 ATGGAAATCGATTTTCCAACCAAACTCGATGATTTTGATGCAGACGAGCGCATCTCCTACTCCAAGCTCGATGAC AAGTACATTGGTGTACGCGACGATGGTGTCGAGTTTGAATTTGACCTCGAGCTGAAGCGGTGGCTGCCAATCACT ACGGACGATGCAGAAGACACAGGCGACGCGTTGGATGTTGGGGGCTGTAGCCTAGATGGCCTAGGCGATGGCGCT CAGAGAAAGCGAAAGCAAGGCGCTGACAAGGGAAGCGAGGTGAGCACCGGGCCGAGGCTCAGTGCAGACGTGATG GCAAGACTGGCAGTTGGACGCTGGAAACTCGAGGCCCGACAATTACCCTGACGCTTTGATTTCTCTCTGCAGCAG AATGCCGATTCCTCTCAGGCCGCCCGGCCAAGTAAAAAGACAAAGGCGCCGCCCAAGCCCAAGCAGAATACGGCA GTGTACGTGACGGGCCTGCCGCCAGACGCATCCGTGCCCGAAATCCACGACGTCTTCTCCCGCAAGGGTGGCCTC ATCGCCGAGGAAATCGATAGCGGTGCCCCACGCATCAAGCTCTACAGGGACGATGCCGGACACTTCAAGGGTGAT GCGCTCATTGTCTTTTTCAAGCCTGACAGCGTGCGCATGGCCATTATGCTTCTCGACGACAGTTATTTTAGATAC ACGCCCAGTGGCCAGGGCCAAGGCAAGATACACGTCCAAGAAGCCGACTCGAGCTACAAAAAGATACAGCAGCAC CAGCAAGACGCCAACGCTGCAATACCCCCCTCGGATGCCGCGCGAAATACGCCAGATGTACGACGGCCTAAGAGG GACAAGGATCGGCAAAAAATCATCCGCAAGACACAGAAACTCGACGCCAAACTGGCTGATTGGAGCGACGACGAG GATGACCGATTCCCGGCTGTTAATGACGCCAAGAGTTCCAGGACGGTTGTCCTCCGTCAAATGTTCCGCATCTTT GAACTTGAAGAGGATCCAGCAGCGATTCTGGACATCAAGCAAGATATTCGCGAAGAGTGTTCCAAGCTGGGCACA GTAACTAATGTGGTACTTTATGACCAAGAGCCAGAAGGCATTGTCACTGTTCGGTTTCACGAGGCAGACGCTGCC ACGGCGTGTATCAAGGCCATGAACGGACGGCCCTTTGACGGGCGCGTTGTCGAGGCTTCCCTCGGCACAGGCAAA GAAAGATTTAGAAGGAGTGACAACAAGGAGCACGATTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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