© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|5743 |
| Gene name | |
| Location | Contig_547:6212..7465 |
| Strand | + |
| Gene length (bp) | 1253 |
| Transcript length (bp) | 933 |
| Coding sequence length (bp) | 933 |
| Protein length (aa) | 311 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00635 | Motile_Sperm | MSP (Major sperm protein) domain | 4.7E-24 | 3 | 93 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O60119|YH75_SCHPO | Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 | 1 | 310 | 3.0E-29 |
| sp|Q10484|YDFC_SCHPO | Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2 | 10 | 226 | 4.0E-28 |
| sp|B9DHD7|VAP22_ARATH | Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 | 3 | 123 | 9.0E-23 |
| sp|Q84WW5|VAP13_ARATH | Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 | 3 | 137 | 2.0E-20 |
| sp|P40075|SCS2_YEAST | Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3 | 2 | 122 | 1.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O60119|YH75_SCHPO | Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 | 1 | 310 | 3.0E-29 |
| sp|Q10484|YDFC_SCHPO | Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2 | 10 | 226 | 4.0E-28 |
| sp|B9DHD7|VAP22_ARATH | Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 | 3 | 123 | 9.0E-23 |
| sp|Q84WW5|VAP13_ARATH | Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 | 3 | 137 | 2.0E-20 |
| sp|P40075|SCS2_YEAST | Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3 | 2 | 122 | 1.0E-19 |
| sp|Q8VZ95|VAP11_ARATH | Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 | 5 | 122 | 1.0E-18 |
| sp|Q9Z269|VAPB_RAT | Vesicle-associated membrane protein-associated protein B OS=Rattus norvegicus GN=Vapb PE=1 SV=3 | 9 | 128 | 7.0E-18 |
| sp|Q5R601|VAPA_PONAB | Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2 | 7 | 121 | 7.0E-18 |
| sp|Q9P0L0|VAPA_HUMAN | Vesicle-associated membrane protein-associated protein A OS=Homo sapiens GN=VAPA PE=1 SV=3 | 7 | 121 | 7.0E-18 |
| sp|Q0VCY1|VAPA_BOVIN | Vesicle-associated membrane protein-associated protein A OS=Bos taurus GN=VAPA PE=2 SV=1 | 7 | 121 | 8.0E-18 |
| sp|Q9WV55|VAPA_MOUSE | Vesicle-associated membrane protein-associated protein A OS=Mus musculus GN=Vapa PE=1 SV=2 | 7 | 121 | 1.0E-17 |
| sp|Q9Z270|VAPA_RAT | Vesicle-associated membrane protein-associated protein A OS=Rattus norvegicus GN=Vapa PE=1 SV=3 | 7 | 121 | 1.0E-17 |
| sp|Q9QY76|VAPB_MOUSE | Vesicle-associated membrane protein-associated protein B OS=Mus musculus GN=Vapb PE=1 SV=3 | 9 | 128 | 2.0E-17 |
| sp|A5GFS8|VAPB_PIG | Vesicle-associated membrane protein-associated protein B OS=Sus scrofa GN=VAPB PE=3 SV=1 | 9 | 88 | 5.0E-17 |
| sp|A2VDZ9|VAPB_BOVIN | Vesicle-associated membrane protein-associated protein B OS=Bos taurus GN=VAPB PE=2 SV=1 | 9 | 88 | 5.0E-17 |
| sp|O95292|VAPB_HUMAN | Vesicle-associated membrane protein-associated protein B/C OS=Homo sapiens GN=VAPB PE=1 SV=3 | 9 | 88 | 7.0E-17 |
| sp|Q16943|VP33_APLCA | Vesicle-associated membrane protein/synaptobrevin-binding protein OS=Aplysia californica PE=2 SV=1 | 9 | 88 | 8.0E-17 |
| sp|Q9SHC8|VAP12_ARATH | Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 | 5 | 122 | 5.0E-16 |
| sp|Q9LVU1|VAP21_ARATH | Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=1 SV=1 | 3 | 134 | 2.0E-14 |
| sp|O82213|VAP31_ARATH | Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 | 3 | 124 | 7.0E-13 |
| sp|Q9SYC9|VAP14_ARATH | Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 | 5 | 94 | 7.0E-11 |
| sp|Q6Q595|SCS22_YEAST | Vesicle-associated membrane protein-associated protein SCS22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS22 PE=1 SV=2 | 5 | 159 | 2.0E-09 |
| sp|Q9SYC9|VAP14_ARATH | Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 | 3 | 122 | 5.0E-09 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 290 | 309 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5743 MSVDVEPLELSFRRPFTEEVSQTLTIKNTTSSPLAFKVKTTAPKQYCVRPNAGRIEPGQDFGVTVLLQAMKSDPP LETKCRDKFLVQSAPITAEKEFVPIASVLEKADKSQIQERKIRVSWLPSLAAKDQVSAAPPSGTSTPMKQSIVSA VSEIYTLWLLSFKRADNISTQVDDTPNAARNYATPRARADSTPRGSIDPSSHTPDSKKDDDKSERPRSAVSQAVT AVSDSAQTSYEELKAKLAQAEAQLANYKDSGLRQRGAKTAAGGDQSKSNTTKIAPQPALKQAEGVSVQLVAILCL ISFLLAYFFF* |
| Coding | >OphauG2|5743 ATGTCTGTCGATGTCGAGCCCCTCGAGTTGTCCTTTCGACGCCCTTTTACCGAAGAGGTGTCCCAGACTCTGACC ATCAAGAACACCACATCGTCACCACTTGCATTCAAGGTTAAAACCACTGCCCCGAAACAATACTGCGTGCGGCCA AATGCAGGTCGCATCGAGCCAGGCCAGGACTTTGGCGTCACGGTCCTCTTGCAAGCAATGAAGTCGGACCCCCCG CTCGAAACAAAATGCCGCGACAAGTTCCTTGTTCAATCCGCTCCAATTACAGCCGAAAAGGAGTTTGTCCCAATT GCATCTGTTCTCGAAAAGGCCGACAAGAGCCAGATTCAAGAACGCAAGATCCGGGTCAGCTGGTTGCCTTCACTT GCGGCCAAGGACCAGGTCAGCGCTGCCCCTCCGTCTGGAACCTCGACGCCCATGAAACAATCCATCGTCTCTGCC GTGAGCGAAATATACACTTTGTGGCTTTTGAGCTTTAAACGTGCTGACAACATTTCAACCCAGGTTGACGATACG CCCAATGCCGCCCGCAACTATGCAACTCCACGTGCACGAGCAGACTCGACTCCTCGAGGCTCCATCGATCCCTCT TCACACACGCCAGATTCCAAGAAGGATGACGATAAGTCGGAGCGCCCTAGGTCGGCCGTTTCTCAAGCTGTTACT GCCGTGTCCGACTCTGCCCAGACTAGCTACGAAGAACTCAAGGCAAAGCTTGCCCAAGCCGAGGCCCAGCTTGCC AATTACAAAGACAGTGGTTTGCGCCAGCGCGGCGCAAAGACGGCAGCAGGTGGCGACCAATCCAAGAGCAACACC ACCAAGATTGCGCCTCAGCCAGCGCTCAAGCAGGCCGAGGGCGTTTCGGTGCAGCTAGTCGCTATTCTGTGCTTG ATTAGCTTTCTCTTGGCATACTTTTTCTTCTAA |
| Transcript | >OphauG2|5743 ATGTCTGTCGATGTCGAGCCCCTCGAGTTGTCCTTTCGACGCCCTTTTACCGAAGAGGTGTCCCAGACTCTGACC ATCAAGAACACCACATCGTCACCACTTGCATTCAAGGTTAAAACCACTGCCCCGAAACAATACTGCGTGCGGCCA AATGCAGGTCGCATCGAGCCAGGCCAGGACTTTGGCGTCACGGTCCTCTTGCAAGCAATGAAGTCGGACCCCCCG CTCGAAACAAAATGCCGCGACAAGTTCCTTGTTCAATCCGCTCCAATTACAGCCGAAAAGGAGTTTGTCCCAATT GCATCTGTTCTCGAAAAGGCCGACAAGAGCCAGATTCAAGAACGCAAGATCCGGGTCAGCTGGTTGCCTTCACTT GCGGCCAAGGACCAGGTCAGCGCTGCCCCTCCGTCTGGAACCTCGACGCCCATGAAACAATCCATCGTCTCTGCC GTGAGCGAAATATACACTTTGTGGCTTTTGAGCTTTAAACGTGCTGACAACATTTCAACCCAGGTTGACGATACG CCCAATGCCGCCCGCAACTATGCAACTCCACGTGCACGAGCAGACTCGACTCCTCGAGGCTCCATCGATCCCTCT TCACACACGCCAGATTCCAAGAAGGATGACGATAAGTCGGAGCGCCCTAGGTCGGCCGTTTCTCAAGCTGTTACT GCCGTGTCCGACTCTGCCCAGACTAGCTACGAAGAACTCAAGGCAAAGCTTGCCCAAGCCGAGGCCCAGCTTGCC AATTACAAAGACAGTGGTTTGCGCCAGCGCGGCGCAAAGACGGCAGCAGGTGGCGACCAATCCAAGAGCAACACC ACCAAGATTGCGCCTCAGCCAGCGCTCAAGCAGGCCGAGGGCGTTTCGGTGCAGCTAGTCGCTATTCTGTGCTTG ATTAGCTTTCTCTTGGCATACTTTTTCTTCTAA |
| Gene | >OphauG2|5743 ATGTCTGTCGATGTCGAGCCCCTCGAGTTGTCCTTTCGACGTACGTTGTCCGACACTTGCTGTCATGCCGCAGCA AACAAGAAAGACAAGGAAAAAAACATATAACAACCATTTGCGCAGGCCCTTTTACCGAAGAGGTGTCCCAGACTC TGACCATCAAGAACACCACATCGTCACCACTTGCATTCAAGGTCAGCGCGCCATCTTGCTAGCTGTCTTGACATT GCTCTTCTAATGCCGCCTACAGGTTAAAACCACTGCCCCGAAACAGTTTGTCCGCCCAATCTCCCTGCTCCTGCT GTATTCTCATGCTCTCCCCACCCCAGATACTGCGTGCGGCCAAATGCAGGTCGCATCGAGCCAGGCCAGGACTTT GGCGTCACGGGTGCGTCGTTTCTTGTCCCCAATATCTCGTCTGCTCTCACACTGGCCCAGTCCTCTTGCAAGCAA TGAAGTCGGACCCCCCGCTCGAAACAAAATGCCGCGACAAGTTCCTTGTTCAATCCGCTCCAATTACAGCCGAAA AGGAGTTTGTCCCAATTGCATCTGTTGTAAGCCTTTTCATTCCGGCGCTTACGGCTTTACTATGCTGACAACTAC TTGCTCTCTTTTTTTTGCCGCGCCTGCAGCTCGAAAAGGCCGACAAGAGCCAGATTCAAGAACGCAAGATCCGGG TCAGCTGGTTGCCTTCACTTGCGGCCAAGGACCAGGTCAGCGCTGCCCCTCCGTCTGGAACCTCGACGCCCATGA AACAATCCATCGTCTCTGCCGTGAGCGAAATATACACTTTGTGGCTTTTGAGCTTTAAACGTGCTGACAACATTT CAACCCAGGTTGACGATACGCCCAATGCCGCCCGCAACTATGCAACTCCACGTGCACGAGCAGACTCGACTCCTC GAGGCTCCATCGATCCCTCTTCACACACGCCAGATTCCAAGAAGGATGACGATAAGTCGGAGCGCCCTAGGTCGG CCGTTTCTCAAGCTGTTACTGCCGTGTCCGACTCTGCCCAGACTAGCTACGAAGAACTCAAGGCAAAGCTTGCCC AAGCCGAGGCCCAGCTTGCCAATTACAAAGACAGTGGTTTGCGCCAGCGCGGCGCAAAGACGGCAGCAGGTGGCG ACCAATCCAAGAGCAACACCACCAAGATTGCGCCTCAGCCAGCGCTCAAGCAGGCCGAGGGCGTTTCGGTGCAGC TAGTCGCTATTCTGTGCTTGATTAGCTTTCTCTTGGCATACTTTTTCTTCTAA |