© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauG2|5700 |
| Gene name | |
| Location | Contig_539:9024..10076 |
| Strand | + |
| Gene length (bp) | 1052 |
| Transcript length (bp) | 855 |
| Coding sequence length (bp) | 855 |
| Protein length (aa) | 285 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05817 | Ribophorin_II | Oligosaccharyltransferase subunit Ribophorin II | 1.8E-27 | 44 | 275 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q02795|OSTD_YEAST | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWP1 PE=1 SV=1 | 75 | 272 | 5.0E-16 |
| sp|Q93Z16|RPN2_ARATH | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana GN=RPN2 PE=2 SV=1 | 40 | 275 | 1.0E-13 |
| sp|Q9DBG6|RPN2_MOUSE | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Mus musculus GN=Rpn2 PE=1 SV=1 | 77 | 281 | 2.0E-09 |
| sp|O74943|YJB6_SCHPO | Uncharacterized protein C553.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.06 PE=3 SV=1 | 3 | 252 | 2.0E-09 |
| sp|P25235|RPN2_RAT | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Rattus norvegicus GN=Rpn2 PE=2 SV=2 | 77 | 281 | 4.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q02795|OSTD_YEAST | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWP1 PE=1 SV=1 | 75 | 272 | 5.0E-16 |
| sp|Q93Z16|RPN2_ARATH | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana GN=RPN2 PE=2 SV=1 | 40 | 275 | 1.0E-13 |
| sp|Q9DBG6|RPN2_MOUSE | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Mus musculus GN=Rpn2 PE=1 SV=1 | 77 | 281 | 2.0E-09 |
| sp|O74943|YJB6_SCHPO | Uncharacterized protein C553.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.06 PE=3 SV=1 | 3 | 252 | 2.0E-09 |
| sp|P25235|RPN2_RAT | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Rattus norvegicus GN=Rpn2 PE=2 SV=2 | 77 | 281 | 4.0E-09 |
| sp|P04844|RPN2_HUMAN | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Homo sapiens GN=RPN2 PE=1 SV=3 | 77 | 281 | 5.0E-09 |
| sp|Q5RBM1|RPN2_PONAB | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Pongo abelii GN=RPN2 PE=2 SV=1 | 77 | 281 | 1.0E-08 |
| sp|Q3SZI6|RPN2_BOVIN | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Bos taurus GN=RPN2 PE=2 SV=1 | 77 | 281 | 2.0E-08 |
| sp|P91390|RPN2_CAEEL | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Caenorhabditis elegans GN=ostd-1 PE=3 SV=1 | 159 | 283 | 2.0E-08 |
| sp|Q5N7W3|RPN2_ORYSJ | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Oryza sativa subsp. japonica GN=RPN2 PE=2 SV=1 | 41 | 272 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006487 | protein N-linked glycosylation | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0008250 | oligosaccharyltransferase complex | Yes |
| GO:0005575 | cellular_component | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0098796 | membrane protein complex | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008152 | metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0043412 | macromolecule modification | No |
| GO:0006486 | protein glycosylation | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0036211 | protein modification process | No |
| GO:0070085 | glycosylation | No |
| GO:1990234 | transferase complex | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043413 | macromolecule glycosylation | No |
| GO:1902494 | catalytic complex | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 189 | 211 | 22 |
| 2 | 223 | 245 | 22 |
| 3 | 250 | 272 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5700 MRFLTASILFAAAAGTARAVASWDFSDASVTVTSKTGDDVVQSFKSSDQVKQTITLGYDGALKLSLTTKEGSKPK RPHQAFLMVKEPSSGLETSFPLKVKDSGQAKAQFALKDLPVQLLLSPEPLEASLVLGSTGSAVGLLTSVFDIALK QDTTAQKPSYEPPERYERLDEIYHTFRQDPKSPPKAISMVFVLAVVGAVPALVIGWLLVGVNTNHAKKALGDSPL SHVMFFGSIVAMEVVFWLYYRNWNLFQALPAMGLVGLVALLSGTRALGEVQRRRLAGER* |
| Coding | >OphauG2|5700 ATGCGCTTTCTGACGGCTTCAATCCTGTTTGCCGCGGCTGCTGGTACCGCTAGGGCCGTGGCGTCGTGGGATTTT TCAGACGCATCCGTCACAGTGACGTCGAAAACGGGCGACGACGTGGTGCAGAGCTTCAAAAGCTCGGACCAGGTC AAGCAAACCATTACGCTCGGGTATGATGGCGCTCTTAAGCTATCACTGACGACCAAAGAGGGCTCCAAGCCAAAG CGGCCACACCAAGCTTTCCTCATGGTCAAGGAACCGTCATCAGGCCTTGAGACTTCTTTTCCTCTCAAGGTCAAG GATAGTGGGCAGGCAAAAGCGCAATTCGCGCTCAAGGACTTGCCCGTGCAGCTACTTCTCTCACCTGAGCCTCTG GAAGCAAGCCTTGTTCTAGGCTCAACTGGCTCAGCAGTGGGATTATTGACATCCGTGTTCGACATTGCGCTCAAG CAAGATACCACTGCGCAAAAACCGAGCTACGAGCCCCCTGAGCGCTACGAGCGACTGGACGAGATATACCATACA TTTCGTCAAGACCCCAAGAGTCCTCCCAAGGCCATATCCATGGTCTTTGTTCTCGCTGTTGTCGGTGCAGTTCCG GCCCTAGTCATTGGCTGGCTTTTGGTCGGCGTTAATACAAATCACGCCAAAAAAGCGCTGGGTGATTCTCCCCTA TCACACGTCATGTTTTTCGGCTCTATTGTGGCCATGGAGGTGGTTTTCTGGCTTTACTACCGCAACTGGAACCTG TTTCAAGCGCTTCCGGCCATGGGCCTTGTTGGCTTGGTGGCGCTTCTAAGCGGTACAAGGGCGTTGGGCGAAGTG CAGCGTCGGCGTTTGGCTGGTGAGCGATGA |
| Transcript | >OphauG2|5700 ATGCGCTTTCTGACGGCTTCAATCCTGTTTGCCGCGGCTGCTGGTACCGCTAGGGCCGTGGCGTCGTGGGATTTT TCAGACGCATCCGTCACAGTGACGTCGAAAACGGGCGACGACGTGGTGCAGAGCTTCAAAAGCTCGGACCAGGTC AAGCAAACCATTACGCTCGGGTATGATGGCGCTCTTAAGCTATCACTGACGACCAAAGAGGGCTCCAAGCCAAAG CGGCCACACCAAGCTTTCCTCATGGTCAAGGAACCGTCATCAGGCCTTGAGACTTCTTTTCCTCTCAAGGTCAAG GATAGTGGGCAGGCAAAAGCGCAATTCGCGCTCAAGGACTTGCCCGTGCAGCTACTTCTCTCACCTGAGCCTCTG GAAGCAAGCCTTGTTCTAGGCTCAACTGGCTCAGCAGTGGGATTATTGACATCCGTGTTCGACATTGCGCTCAAG CAAGATACCACTGCGCAAAAACCGAGCTACGAGCCCCCTGAGCGCTACGAGCGACTGGACGAGATATACCATACA TTTCGTCAAGACCCCAAGAGTCCTCCCAAGGCCATATCCATGGTCTTTGTTCTCGCTGTTGTCGGTGCAGTTCCG GCCCTAGTCATTGGCTGGCTTTTGGTCGGCGTTAATACAAATCACGCCAAAAAAGCGCTGGGTGATTCTCCCCTA TCACACGTCATGTTTTTCGGCTCTATTGTGGCCATGGAGGTGGTTTTCTGGCTTTACTACCGCAACTGGAACCTG TTTCAAGCGCTTCCGGCCATGGGCCTTGTTGGCTTGGTGGCGCTTCTAAGCGGTACAAGGGCGTTGGGCGAAGTG CAGCGTCGGCGTTTGGCTGGTGAGCGATGA |
| Gene | >OphauG2|5700 ATGCGCTTTCTGACGGCTTCAATCCTGTTTGCCGCGGCTGCTGGTACCGCTAGGGCCGTGGCGTCGTGGGATTTT TCAGACGCATCCGTCACAGTGACGTCGAAAACGGGCGACGACGTGGTGCAGAGGTGAGCTGGACAAAACCAAATG GCACACATCAAGAACAAGGCGACTAATATAAGCTTGCCAACAGCTTCAAAAGCTCGGACCAGGTCAAGCAAACCA TTACGCTCGGGTATGATGGCGCTCTTAAGCTATCACTGACGACCAAAGAGGGCTCCAAGCCAAAGCGGCCACACC AAGCTTTCCTCATGGTCAAGGAACCGTCATCAGGCCTTGAGACTTCTTTTCCTCTCAAGGTCAAGGATAGTGGGC AGGCAAAAGCGCAATTCGTGTGTCGCATTTACTATGGACGCACCGCAAGACTCACGATGCTAACCAACGAGGACA ATTTAGGCGCTCAAGGACTTGCCCGTGCAGCTACTTCTCTCACCTGAGCCTCTGGAAGCAAGCCTTGTTCTAGGC TCAACTGGCTCAGCAGTGGGATTATTGACATCCGTGTTCGACATTGCGCTCAAGCAAGATACCACTGCGCAAAAA CCGAGCTACGAGCCCCCTGAGCGCTACGAGCGACTGGACGAGATATACCATACATTTCGTCAAGACCCCAAGAGT CCTCCCAAGGCCATATCCATGGTCTTTGTTCTCGCTGTTGTCGGTGCAGTTCCGGCCCTAGTCATTGGCGTAAGA CGATGATTGCCAAGAAAAAAAAAGAAGCAGTTTCGATGGCTAACGCATACGTGTTTTTGCAGTGGCTTTTGGTCG GCGTTAATACAAATCACGCCAAAAAAGCGCTGGGTGATTCTCCCCTATCACACGTCATGTTTTTCGGCTCTATTG TGGCCATGGAGGTGGTTTTCTGGCTTTACTACCGCAACTGGAACCTGTTTCAAGCGCTTCCGGCCATGGGCCTTG TTGGCTTGGTGGCGCTTCTAAGCGGTACAAGGGCGTTGGGCGAAGTGCAGCGTCGGCGTTTGGCTGGTGAGCGAT GA |