© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|5637 |
| Gene name | |
| Location | Contig_529:3813..5081 |
| Strand | + |
| Gene length (bp) | 1268 |
| Transcript length (bp) | 1140 |
| Coding sequence length (bp) | 1140 |
| Protein length (aa) | 380 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05383 | La | La domain | 2.2E-18 | 175 | 232 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.6E-08 | 280 | 338 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87058|LAH1_SCHPO | La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sla1 PE=1 SV=1 | 168 | 353 | 2.0E-37 |
| sp|P33399|LHP1_YEAST | La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LHP1 PE=1 SV=2 | 173 | 373 | 2.0E-24 |
| sp|P05455|LA_HUMAN | Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2 | 175 | 360 | 1.0E-18 |
| sp|P10881|LA_BOVIN | Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2 | 175 | 360 | 4.0E-18 |
| sp|P32067|LA_MOUSE | Lupus La protein homolog OS=Mus musculus GN=Ssb PE=1 SV=1 | 174 | 360 | 1.0E-17 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87058|LAH1_SCHPO | La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sla1 PE=1 SV=1 | 168 | 353 | 2.0E-37 |
| sp|P33399|LHP1_YEAST | La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LHP1 PE=1 SV=2 | 173 | 373 | 2.0E-24 |
| sp|P05455|LA_HUMAN | Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2 | 175 | 360 | 1.0E-18 |
| sp|P10881|LA_BOVIN | Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2 | 175 | 360 | 4.0E-18 |
| sp|P32067|LA_MOUSE | Lupus La protein homolog OS=Mus musculus GN=Ssb PE=1 SV=1 | 174 | 360 | 1.0E-17 |
| sp|P28049|LAB_XENLA | Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1 | 175 | 352 | 7.0E-17 |
| sp|P38656|LA_RAT | Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=1 SV=1 | 174 | 360 | 1.0E-16 |
| sp|P28048|LAA_XENLA | Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1 | 170 | 352 | 9.0E-16 |
| sp|Q26457|LA_AEDAL | La protein homolog OS=Aedes albopictus PE=1 SV=1 | 177 | 338 | 4.0E-15 |
| sp|P40796|LA_DROME | La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2 | 175 | 352 | 7.0E-14 |
| sp|Q94A38|LRP6A_ARATH | La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1 | 175 | 299 | 5.0E-09 |
| sp|Q7ZWE3|LARP7_DANRE | La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1 | 167 | 331 | 1.0E-08 |
| sp|Q93ZV7|LA1_ARATH | La protein 1 OS=Arabidopsis thaliana GN=LA1 PE=1 SV=1 | 175 | 346 | 2.0E-08 |
| sp|Q05CL8|LARP7_MOUSE | La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2 | 174 | 331 | 2.0E-06 |
| sp|Q5XI01|LARP7_RAT | La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2 | 174 | 331 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5637 MADSDATSKPTTTAEVHQVAETKVDASNNPEPTTATLATPEAGLDQAESKVDSSNNLESTKATPEAEIVQAETKV DTSNNPEPANPTPETGLNQAETEPQQALAQHNEADTKPKEALAKSNPTEQQRSKAAYDSSARHGNNKTHKSSAKM NRRDVNKHRKFDPSVRRITDDPDEIRKQVEFYFGDWNFPQDKFMWESCGGPDNKPIPISTIHSFKRMRCFQPYSA VVLALRQSTFLDVDGEEGQESVKRKVAYKSTADAKAKAEASSVYVKGFGEEDPNTQFDLESFFAKFGEVRGLKLR RTNDGLFKGSVFVTFQDEEAAKQFIELQPAPTYKGNELKIMSKRAYCEDKSELIRQGKLQPNPVAPKKFFEGHDA SWGS* |
| Coding | >OphauG2|5637 ATGGCCGATTCAGACGCCACATCCAAGCCTACCACTACTGCAGAGGTGCACCAAGTAGCAGAGACCAAGGTCGAT GCTTCCAATAACCCAGAGCCTACAACAGCCACTCTGGCCACTCCTGAAGCAGGACTCGACCAAGCAGAGTCCAAG GTCGACTCCTCCAATAACCTAGAATCGACAAAGGCCACTCCTGAAGCAGAAATCGTCCAAGCAGAGACCAAAGTC GATACTTCCAATAACCCAGAGCCAGCAAACCCCACTCCTGAAACAGGACTCAACCAGGCAGAGACGGAGCCGCAG CAGGCACTCGCTCAACATAACGAGGCAGATACCAAGCCCAAGGAGGCATTGGCCAAATCCAATCCAACAGAGCAA CAACGCAGTAAAGCTGCATATGATTCCTCTGCCCGACACGGAAACAACAAGACGCACAAGAGCAGCGCCAAGATG AATCGTCGCGACGTTAACAAGCATCGGAAATTCGATCCCAGTGTTCGAAGAATTACCGACGACCCGGACGAGATT CGGAAACAGGTTGAGTTTTATTTTGGAGACTGGAACTTTCCCCAGGACAAGTTTATGTGGGAATCCTGCGGAGGC CCAGACAACAAGCCAATTCCAATCTCCACGATTCACTCATTCAAGAGGATGCGGTGCTTCCAGCCCTATAGTGCT GTCGTTTTAGCCCTTCGCCAAAGCACCTTTCTCGACGTTGATGGGGAAGAGGGCCAGGAGAGCGTCAAACGCAAG GTTGCGTACAAGTCGACGGCCGATGCCAAGGCCAAGGCCGAAGCGTCCTCGGTTTATGTCAAGGGCTTTGGCGAG GAGGATCCCAACACGCAGTTTGATTTGGAGAGCTTTTTTGCAAAGTTTGGTGAGGTTAGAGGCCTCAAGCTCCGT CGAACAAATGACGGGCTCTTCAAAGGCTCAGTCTTTGTTACCTTTCAAGACGAAGAGGCTGCCAAACAATTCATT GAGCTGCAGCCGGCGCCAACTTACAAGGGCAATGAGCTGAAAATCATGTCCAAGCGCGCCTACTGCGAGGACAAG TCGGAGCTTATTCGTCAGGGCAAGCTGCAGCCCAATCCGGTTGCGCCCAAGAAATTCTTTGAGGGACATGACGCC TCATGGGGCTCGTGA |
| Transcript | >OphauG2|5637 ATGGCCGATTCAGACGCCACATCCAAGCCTACCACTACTGCAGAGGTGCACCAAGTAGCAGAGACCAAGGTCGAT GCTTCCAATAACCCAGAGCCTACAACAGCCACTCTGGCCACTCCTGAAGCAGGACTCGACCAAGCAGAGTCCAAG GTCGACTCCTCCAATAACCTAGAATCGACAAAGGCCACTCCTGAAGCAGAAATCGTCCAAGCAGAGACCAAAGTC GATACTTCCAATAACCCAGAGCCAGCAAACCCCACTCCTGAAACAGGACTCAACCAGGCAGAGACGGAGCCGCAG CAGGCACTCGCTCAACATAACGAGGCAGATACCAAGCCCAAGGAGGCATTGGCCAAATCCAATCCAACAGAGCAA CAACGCAGTAAAGCTGCATATGATTCCTCTGCCCGACACGGAAACAACAAGACGCACAAGAGCAGCGCCAAGATG AATCGTCGCGACGTTAACAAGCATCGGAAATTCGATCCCAGTGTTCGAAGAATTACCGACGACCCGGACGAGATT CGGAAACAGGTTGAGTTTTATTTTGGAGACTGGAACTTTCCCCAGGACAAGTTTATGTGGGAATCCTGCGGAGGC CCAGACAACAAGCCAATTCCAATCTCCACGATTCACTCATTCAAGAGGATGCGGTGCTTCCAGCCCTATAGTGCT GTCGTTTTAGCCCTTCGCCAAAGCACCTTTCTCGACGTTGATGGGGAAGAGGGCCAGGAGAGCGTCAAACGCAAG GTTGCGTACAAGTCGACGGCCGATGCCAAGGCCAAGGCCGAAGCGTCCTCGGTTTATGTCAAGGGCTTTGGCGAG GAGGATCCCAACACGCAGTTTGATTTGGAGAGCTTTTTTGCAAAGTTTGGTGAGGTTAGAGGCCTCAAGCTCCGT CGAACAAATGACGGGCTCTTCAAAGGCTCAGTCTTTGTTACCTTTCAAGACGAAGAGGCTGCCAAACAATTCATT GAGCTGCAGCCGGCGCCAACTTACAAGGGCAATGAGCTGAAAATCATGTCCAAGCGCGCCTACTGCGAGGACAAG TCGGAGCTTATTCGTCAGGGCAAGCTGCAGCCCAATCCGGTTGCGCCCAAGAAATTCTTTGAGGGACATGACGCC TCATGGGGCTCGTGA |
| Gene | >OphauG2|5637 ATGGCCGATTCAGACGCCACATCCAAGCCTACCACTACTGCAGAGGTGCACCAAGTAGCAGAGACCAAGGTCGAT GCTTCCAATAACCCAGAGCCTACAACAGCCACTCTGGCCACTCCTGAAGCAGGACTCGACCAAGCAGAGTCCAAG GTCGACTCCTCCAATAACCTAGAATCGACAAAGGCCACTCCTGAAGCAGAAATCGTCCAAGCAGAGACCAAAGTC GATACTTCCAATAACCCAGAGCCAGCAAACCCCACTCCTGAAACAGGACTCAACCAGGCAGAGACGGAGCCGCAG CAGGCACTCGCTCAACATAACGAGGCAGATACCAAGCCCAAGGAGGCATTGGCCAAATCCAATCCAACAGAGCAA CAACGCAGTAAAGCTGCATATGATTCCTCTGCCCGACACGGAAACAACAAGACGCACAAGAGCAGCGCCAAGATG AATCGTCGCGACGTTAACAAGCATCGGAAATTCGATCCCAGTGTTCGAAGAATTACCGACGACCCGGACGAGATT CGGAAACAGGTAATTACCCCCTATCCCCCCTCCCCCCCATGTTGCACTCTGCACCCTTCTAAACAGCAAAAACCT TGCTTGCTATAGGTTGAGTTTTATTTTGGAGACTGGAACTTTCCCCAGGACAAGTTTATGTGGGAATCCTGCGGA GGCCCAGACAACAAGCCAATTCCAATCTCCACGATTCACTCATTCAAGAGGATGCGGTGCTTCCAGCCCTATAGT GCTGTCGTTTTAGCCCTTCGCCAAAGCACCTTTCTCGACGTTGATGGGGAAGAGGGCCAGGAGAGCGTCAAACGC AAGGTTGCGTACAAGTCGACGGCCGATGCCAAGGCCAAGGCCGAAGCGTCCTCGGTTTATGTCAAGGGCTTTGGC GAGGAGGATCCCAACACGCAGTTTGATTTGGAGAGCTTTTTTGCAAAGTTTGGTGAGGTTAGAGGCCTCAAGCTC CGTCGAACAAATGACGGGCTCTTCAAAGGCTCAGTCTTTGTTACCTTTCAAGACGAAGAGGCTGCCAAACAATTC ATTGAGCTGCAGCCGGCGCCAACTTACAAGGGCAATGAGCTGAAAATCATGTCCAAGCGCGCCTACTGCGAGGAC AAGTCGGAGCTTATTCGTCAGGGCAAGCTGCAGCCCAATCCGGTTGCGCCCAAGAAATTCTTTGAGGGACATGAC GGTTCCATCAAGATGTTTAATGGTAGAGGGGGTGGTAGCAAGAGGGGACAGCCTCATGGGGCTCGTGA |