Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|5632
Gene name
LocationContig_528:4339..4910
Strand+
Gene length (bp)571
Transcript length (bp)486
Coding sequence length (bp)486
Protein length (aa) 162

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12171 zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 5.3E-05 12 40

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9UKJ3|GPTC8_HUMAN G patch domain-containing protein 8 OS=Homo sapiens GN=GPATCH8 PE=1 SV=2 13 67 4.0E-10
sp|A2A6A1|GPTC8_MOUSE G patch domain-containing protein 8 OS=Mus musculus GN=Gpatch8 PE=1 SV=1 13 67 4.0E-10
sp|Q7Z570|Z804A_HUMAN Zinc finger protein 804A OS=Homo sapiens GN=ZNF804A PE=1 SV=3 13 67 6.0E-08
sp|A2AKY4|Z804A_MOUSE Zinc finger protein 804A OS=Mus musculus GN=Znf804a PE=2 SV=1 13 67 2.0E-07
sp|A4D1E1|Z804B_HUMAN Zinc finger protein 804B OS=Homo sapiens GN=ZNF804B PE=2 SV=2 13 47 3.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|5632
MAPASAASAQRPFYCALCQKGYARMHEYDAHLGSYDHSHKQRLRDMKLMVRDPAAGARARRAEAKADGITPLKID
GDANAAPSSGAAAAAPLKMAKFKRTGFKSAFGPKDDGQTAATAAPVETAPAKVEASISVPAFRISTEDSDTDQQA
YEHYDPRYPTD*
Coding >OphauG2|5632
ATGGCTCCGGCTTCAGCAGCTTCCGCCCAGCGTCCCTTTTACTGCGCTCTCTGCCAAAAGGGCTACGCTCGCATG
CATGAGTACGACGCCCATCTGGGCTCGTATGACCACTCGCATAAGCAGCGCCTCCGTGACATGAAGCTCATGGTT
CGTGATCCTGCCGCTGGCGCTCGAGCTCGTCGCGCCGAGGCCAAGGCCGACGGCATCACTCCGCTCAAGATTGAT
GGCGACGCCAATGCTGCTCCTTCTTCGGGCGCTGCCGCTGCCGCTCCCCTCAAGATGGCCAAGTTTAAGCGCACC
GGCTTCAAGAGTGCGTTTGGCCCCAAGGACGATGGCCAGACTGCTGCTACTGCTGCCCCCGTTGAAACTGCCCCT
GCCAAGGTGGAAGCCTCGATTAGCGTTCCTGCATTTCGCATTTCGACTGAGGATAGCGACACGGACCAACAGGCC
TACGAGCACTACGATCCCCGCTATCCCACAGACTAA
Transcript >OphauG2|5632
ATGGCTCCGGCTTCAGCAGCTTCCGCCCAGCGTCCCTTTTACTGCGCTCTCTGCCAAAAGGGCTACGCTCGCATG
CATGAGTACGACGCCCATCTGGGCTCGTATGACCACTCGCATAAGCAGCGCCTCCGTGACATGAAGCTCATGGTT
CGTGATCCTGCCGCTGGCGCTCGAGCTCGTCGCGCCGAGGCCAAGGCCGACGGCATCACTCCGCTCAAGATTGAT
GGCGACGCCAATGCTGCTCCTTCTTCGGGCGCTGCCGCTGCCGCTCCCCTCAAGATGGCCAAGTTTAAGCGCACC
GGCTTCAAGAGTGCGTTTGGCCCCAAGGACGATGGCCAGACTGCTGCTACTGCTGCCCCCGTTGAAACTGCCCCT
GCCAAGGTGGAAGCCTCGATTAGCGTTCCTGCATTTCGCATTTCGACTGAGGATAGCGACACGGACCAACAGGCC
TACGAGCACTACGATCCCCGCTATCCCACAGACTAA
Gene >OphauG2|5632
ATGGCTCCGGTTAGCAAAAAAACACCCCTTATCCCCATGACAGCTTTGCTTCCTTGTACACAGTAATCTCATTAA
TCCTTTTTTGCGCTCGCAGGCTTCAGCAGCTTCCGCCCAGCGTCCCTTTTACTGCGCTCTCTGCCAAAAGGGCTA
CGCTCGCATGCATGAGTACGACGCCCATCTGGGCTCGTATGACCACTCGCATAAGCAGCGCCTCCGTGACATGAA
GCTCATGGTTCGTGATCCTGCCGCTGGCGCTCGAGCTCGTCGCGCCGAGGCCAAGGCCGACGGCATCACTCCGCT
CAAGATTGATGGCGACGCCAATGCTGCTCCTTCTTCGGGCGCTGCCGCTGCCGCTCCCCTCAAGATGGCCAAGTT
TAAGCGCACCGGCTTCAAGAGTGCGTTTGGCCCCAAGGACGATGGCCAGACTGCTGCTACTGCTGCCCCCGTTGA
AACTGCCCCTGCCAAGGTGGAAGCCTCGATTAGCGTTCCTGCATTTCGCATTTCGACTGAGGATAGCGACACGGA
CCAACAGGCCTACGAGCACTACGATCCCCGCTATCCCACAGACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail