Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|5616
Gene name
LocationContig_524:5191..7802
Strand-
Gene length (bp)2611
Transcript length (bp)2550
Coding sequence length (bp)2550
Protein length (aa) 850

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-08 365 425

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q10145|YAS9_SCHPO Uncharacterized RNA-binding protein C3H8.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.09c PE=3 SV=1 305 648 2.0E-25
sp|P38996|NAB3_YEAST Nuclear polyadenylated RNA-binding protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAB3 PE=1 SV=1 309 440 7.0E-07

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003676 nucleic acid binding No
GO:0097159 organic cyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|5616
MVAAVAAPTASANENNRDAAVDFVDDDSLEGAYGMDNTTASDTAPAPPPEADANDDYAKSFDSPVEPGQGDGQNG
QLHNVPLSSPSMPPPDSSHISLPLESVSATNGPPPAAGSTVASPQAHSGQPPDASPPATASRQSQKPLHQAGSEL
APESAVESGSVAADSPGSSVDLQKLVADLTAQPTTSSSTPVATQSKQAVDVVPLNSSASLPSSSSLPPRPPQPDT
QSYSSQHLPSAASSNASMPNGNLVPSTSGHPPAAIASTEAMVIAPTFAAVPSATPASRSMNAVACPPQTAPGYPV
NGASNTEYENQWDRFVADERQYMSDAKWDRFPEGSRLFIGNFALVSLERLQHTLDHRLMCFSVTGNLSSDKVSKR
DVFEVFHKFGRLAQISLKSAYGFVQYHDVEEGRRAMEHLQGIEIKGRRIHLEVSRVQEKSKKDRGRSPDRARGRD
SGRRGDKHHGGRDDYRPGRNHSPRRHDHHHGRDGGPSRDRAFHDGGRGARGRSRSPGYGRNDQDSYRRRSPSPYG
RSRQEVEVDLPHRFGSEVPDVQIILQPDVSRDFGAWVQDAFNAKGLRTEVMYLHPRFSRDHVIQRQAAEGVHGVV
DLDAHAQSVGRIPVQAFKRSVESGKVRFDQYVNLDPNTAAEVILRAKSVAAAPYGQGYAPGAGYGASYNGAVQQH
PINYGTNPYAASQHQQQPHQQQQQPPPQHQQQQSHQQQSHAQQQHQQPVAPSAADIAGLMGQLDNATLQRLLTSI
QGSGPSHGQGGVAAVPGGYGVPAVAQTATSPQVDIQTILGSLGGNASSTHHHGASHASYGTTYGAQSSVASNAGV
NAPSGGQDTTAQVQHIMAHLSRFR*
Coding >OphauG2|5616
ATGGTTGCTGCCGTCGCTGCTCCAACGGCCAGTGCCAACGAAAACAACCGTGATGCGGCTGTTGATTTCGTAGAT
GATGACAGCTTGGAAGGTGCTTACGGCATGGACAACACTACCGCCTCCGACACCGCCCCAGCCCCGCCGCCAGAG
GCCGATGCGAACGATGATTATGCCAAATCTTTCGACTCACCTGTCGAGCCAGGCCAAGGTGATGGGCAGAACGGT
CAATTGCACAATGTACCATTGTCGTCGCCATCAATGCCACCGCCAGACTCGAGCCATATTTCGCTGCCCCTCGAG
TCCGTGAGTGCTACAAATGGCCCCCCGCCCGCTGCTGGCTCCACTGTCGCCTCCCCACAGGCTCACTCTGGACAG
CCTCCAGATGCCTCTCCCCCGGCCACCGCCTCGCGCCAATCCCAAAAGCCTTTACACCAAGCTGGCTCCGAGCTC
GCACCAGAGTCCGCTGTCGAGTCTGGCTCGGTAGCTGCCGACTCGCCAGGCTCCTCAGTCGACCTCCAGAAGCTT
GTGGCTGATCTGACGGCCCAGCCTACAACCTCTTCCTCGACGCCTGTTGCTACTCAGTCTAAACAAGCTGTGGAT
GTCGTCCCCTTGAACTCCTCCGCCTCGTTGCCATCATCCTCATCTCTGCCCCCGCGGCCTCCGCAGCCGGATACC
CAATCGTATTCATCGCAGCATTTGCCCTCGGCAGCCAGCTCCAATGCGTCCATGCCCAATGGAAACCTTGTACCA
TCAACATCTGGCCATCCCCCTGCTGCTATTGCTTCTACCGAAGCCATGGTTATCGCCCCCACATTTGCTGCCGTA
CCGAGCGCAACTCCAGCCTCCAGATCAATGAATGCCGTTGCCTGTCCGCCCCAGACGGCACCAGGCTACCCCGTC
AACGGGGCATCCAATACCGAGTATGAGAATCAGTGGGATCGATTTGTCGCTGATGAACGACAGTACATGTCGGAT
GCCAAATGGGATCGCTTCCCAGAAGGCTCTCGTCTCTTTATCGGTAACTTTGCCCTCGTGTCTCTAGAACGATTG
CAGCACACACTTGACCACAGACTGATGTGCTTTTCCGTGACAGGCAATCTTTCTAGTGACAAAGTTTCGAAGCGC
GACGTCTTTGAAGTATTCCACAAGTTTGGCAGACTGGCCCAGATATCACTAAAATCTGCCTATGGCTTTGTTCAG
TACCATGATGTCGAAGAGGGCCGCCGCGCCATGGAACATTTGCAGGGCATTGAGATCAAAGGACGCCGCATCCAT
CTCGAGGTCTCTCGGGTCCAGGAAAAGTCCAAAAAGGACCGCGGCCGCAGCCCTGACAGGGCAAGGGGACGTGAC
TCTGGCCGTCGAGGTGATAAACACCACGGCGGTCGCGACGACTACCGGCCGGGGCGCAATCACTCGCCTCGTCGT
CACGATCATCACCATGGACGCGACGGCGGCCCATCTCGCGACCGTGCCTTTCATGACGGTGGTCGAGGTGCCCGT
GGCCGCTCACGGTCGCCTGGATATGGACGCAACGATCAAGACTCTTATAGACGTCGTAGTCCCAGTCCATATGGC
AGGTCGCGGCAAGAGGTTGAAGTCGATCTTCCTCACAGGTTCGGGTCTGAGGTGCCAGACGTGCAGATTATCTTA
CAGCCAGATGTCAGCCGCGACTTTGGCGCATGGGTCCAAGATGCTTTCAATGCCAAGGGCCTCAGGACCGAGGTC
ATGTACCTCCATCCGCGATTTTCCAGAGACCATGTTATTCAGAGACAGGCGGCTGAAGGTGTTCATGGCGTCGTT
GATTTGGACGCGCACGCACAGAGTGTCGGGCGCATCCCTGTTCAGGCCTTCAAGCGGTCTGTTGAAAGTGGCAAG
GTTCGCTTCGACCAGTACGTCAACCTGGATCCAAACACTGCTGCAGAGGTCATTTTGCGCGCCAAGTCTGTGGCC
GCCGCTCCCTATGGACAAGGTTACGCCCCGGGGGCCGGATACGGCGCTTCGTATAACGGAGCAGTCCAACAACAC
CCTATTAACTATGGTACCAATCCTTACGCAGCATCACAACACCAACAGCAGCCACACCAGCAGCAGCAGCAGCCG
CCGCCGCAACACCAGCAGCAACAATCACATCAGCAACAATCACACGCGCAACAACAGCATCAGCAGCCCGTCGCC
CCAAGCGCCGCTGACATTGCAGGTTTGATGGGCCAGTTGGACAATGCGACTCTCCAGCGACTTTTGACCTCTATT
CAAGGGTCGGGTCCATCTCACGGCCAGGGCGGCGTTGCCGCTGTACCCGGAGGCTACGGCGTGCCTGCTGTGGCT
CAAACTGCGACTAGTCCACAAGTCGATATACAGACTATCCTGGGCAGCCTCGGTGGCAATGCCTCCTCCACGCAT
CACCATGGCGCATCCCATGCATCGTATGGCACCACGTATGGCGCCCAGTCCTCGGTGGCCTCAAACGCGGGTGTA
AATGCGCCATCGGGAGGTCAAGACACGACGGCGCAGGTGCAACACATCATGGCGCACCTCTCACGCTTCAGATAG
Transcript >OphauG2|5616
ATGGTTGCTGCCGTCGCTGCTCCAACGGCCAGTGCCAACGAAAACAACCGTGATGCGGCTGTTGATTTCGTAGAT
GATGACAGCTTGGAAGGTGCTTACGGCATGGACAACACTACCGCCTCCGACACCGCCCCAGCCCCGCCGCCAGAG
GCCGATGCGAACGATGATTATGCCAAATCTTTCGACTCACCTGTCGAGCCAGGCCAAGGTGATGGGCAGAACGGT
CAATTGCACAATGTACCATTGTCGTCGCCATCAATGCCACCGCCAGACTCGAGCCATATTTCGCTGCCCCTCGAG
TCCGTGAGTGCTACAAATGGCCCCCCGCCCGCTGCTGGCTCCACTGTCGCCTCCCCACAGGCTCACTCTGGACAG
CCTCCAGATGCCTCTCCCCCGGCCACCGCCTCGCGCCAATCCCAAAAGCCTTTACACCAAGCTGGCTCCGAGCTC
GCACCAGAGTCCGCTGTCGAGTCTGGCTCGGTAGCTGCCGACTCGCCAGGCTCCTCAGTCGACCTCCAGAAGCTT
GTGGCTGATCTGACGGCCCAGCCTACAACCTCTTCCTCGACGCCTGTTGCTACTCAGTCTAAACAAGCTGTGGAT
GTCGTCCCCTTGAACTCCTCCGCCTCGTTGCCATCATCCTCATCTCTGCCCCCGCGGCCTCCGCAGCCGGATACC
CAATCGTATTCATCGCAGCATTTGCCCTCGGCAGCCAGCTCCAATGCGTCCATGCCCAATGGAAACCTTGTACCA
TCAACATCTGGCCATCCCCCTGCTGCTATTGCTTCTACCGAAGCCATGGTTATCGCCCCCACATTTGCTGCCGTA
CCGAGCGCAACTCCAGCCTCCAGATCAATGAATGCCGTTGCCTGTCCGCCCCAGACGGCACCAGGCTACCCCGTC
AACGGGGCATCCAATACCGAGTATGAGAATCAGTGGGATCGATTTGTCGCTGATGAACGACAGTACATGTCGGAT
GCCAAATGGGATCGCTTCCCAGAAGGCTCTCGTCTCTTTATCGGTAACTTTGCCCTCGTGTCTCTAGAACGATTG
CAGCACACACTTGACCACAGACTGATGTGCTTTTCCGTGACAGGCAATCTTTCTAGTGACAAAGTTTCGAAGCGC
GACGTCTTTGAAGTATTCCACAAGTTTGGCAGACTGGCCCAGATATCACTAAAATCTGCCTATGGCTTTGTTCAG
TACCATGATGTCGAAGAGGGCCGCCGCGCCATGGAACATTTGCAGGGCATTGAGATCAAAGGACGCCGCATCCAT
CTCGAGGTCTCTCGGGTCCAGGAAAAGTCCAAAAAGGACCGCGGCCGCAGCCCTGACAGGGCAAGGGGACGTGAC
TCTGGCCGTCGAGGTGATAAACACCACGGCGGTCGCGACGACTACCGGCCGGGGCGCAATCACTCGCCTCGTCGT
CACGATCATCACCATGGACGCGACGGCGGCCCATCTCGCGACCGTGCCTTTCATGACGGTGGTCGAGGTGCCCGT
GGCCGCTCACGGTCGCCTGGATATGGACGCAACGATCAAGACTCTTATAGACGTCGTAGTCCCAGTCCATATGGC
AGGTCGCGGCAAGAGGTTGAAGTCGATCTTCCTCACAGGTTCGGGTCTGAGGTGCCAGACGTGCAGATTATCTTA
CAGCCAGATGTCAGCCGCGACTTTGGCGCATGGGTCCAAGATGCTTTCAATGCCAAGGGCCTCAGGACCGAGGTC
ATGTACCTCCATCCGCGATTTTCCAGAGACCATGTTATTCAGAGACAGGCGGCTGAAGGTGTTCATGGCGTCGTT
GATTTGGACGCGCACGCACAGAGTGTCGGGCGCATCCCTGTTCAGGCCTTCAAGCGGTCTGTTGAAAGTGGCAAG
GTTCGCTTCGACCAGTACGTCAACCTGGATCCAAACACTGCTGCAGAGGTCATTTTGCGCGCCAAGTCTGTGGCC
GCCGCTCCCTATGGACAAGGTTACGCCCCGGGGGCCGGATACGGCGCTTCGTATAACGGAGCAGTCCAACAACAC
CCTATTAACTATGGTACCAATCCTTACGCAGCATCACAACACCAACAGCAGCCACACCAGCAGCAGCAGCAGCCG
CCGCCGCAACACCAGCAGCAACAATCACATCAGCAACAATCACACGCGCAACAACAGCATCAGCAGCCCGTCGCC
CCAAGCGCCGCTGACATTGCAGGTTTGATGGGCCAGTTGGACAATGCGACTCTCCAGCGACTTTTGACCTCTATT
CAAGGGTCGGGTCCATCTCACGGCCAGGGCGGCGTTGCCGCTGTACCCGGAGGCTACGGCGTGCCTGCTGTGGCT
CAAACTGCGACTAGTCCACAAGTCGATATACAGACTATCCTGGGCAGCCTCGGTGGCAATGCCTCCTCCACGCAT
CACCATGGCGCATCCCATGCATCGTATGGCACCACGTATGGCGCCCAGTCCTCGGTGGCCTCAAACGCGGGTGTA
AATGCGCCATCGGGAGGTCAAGACACGACGGCGCAGGTGCAACACATCATGGCGCACCTCTCACGCTTCAGATAG
Gene >OphauG2|5616
ATGGTTGCTGCCGTCGCTGCTCCAACGGCCAGTGCCAACGAAAACAACCGTGATGCGGCTGTTGATTTCGTAGAT
GATGACAGCTTGGAAGGTGCTTACGGCATGGACAACACTACCGCCTCCGACACCGCCCCAGCCCCGCCGCCAGAG
GCCGATGCGAACGATGATTATGCCAAATCTTTCGACTCACCTGTCGAGCCAGGCCAAGGTGATGGGCAGAACGGT
CAATTGCACAATGTACCATTGTCGTCGCCATCAATGCCACCGCCAGACTCGAGCCATATTTCGCTGCCCCTCGAG
TCCGTGAGTGCTACAAATGGCCCCCCGCCCGCTGCTGGCTCCACTGTCGCCTCCCCACAGGCTCACTCTGGACAG
CCTCCAGATGCCTCTCCCCCGGCCACCGCCTCGCGCCAATCCCAAAAGCCTTTACACCAAGCTGGCTCCGAGCTC
GCACCAGAGTCCGCTGTCGAGTCTGGCTCGGTAGCTGCCGACTCGCCAGGCTCCTCAGTCGACCTCCAGAAGCTT
GTGGCTGATCTGACGGCCCAGCCTACAACCTCTTCCTCGACGCCTGTTGCTACTCAGTCTAAACAAGCTGTGGAT
GTCGTCCCCTTGAACTCCTCCGCCTCGTTGCCATCATCCTCATCTCTGCCCCCGCGGCCTCCGCAGCCGGATACC
CAATCGTATTCATCGCAGCATTTGCCCTCGGCAGCCAGCTCCAATGCGTCCATGCCCAATGGAAACCTTGTACCA
TCAACATCTGGCCATCCCCCTGCTGCTATTGCTTCTACCGAAGCCATGGTTATCGCCCCCACATTTGCTGCCGTA
CCGAGCGCAACTCCAGCCTCCAGATCAATGAATGCCGTTGCCTGTCCGCCCCAGACGGCACCAGGCTACCCCGTC
AACGGGGCATCCAATACCGAGTATGAGAATCAGTGGGATCGATTTGTCGCTGATGAACGACAGTACATGTCGGAT
GCCAAATGGGATCGCTTCCCAGAAGGCTCTCGTCTCTTTATCGGTAACTTTGCCCTCGTGTCTCTAGAACGATTG
CAGCACACACTTGACCACAGACTGATGTGCTTTTCCGTGACAGGCAATCTTTCTAGTGACAAAGTTTCGAAGCGC
GACGTCTTTGAAGTATTCCACAAGTTTGGCAGACTGGCCCAGATATCACTAAAATCTGCCTATGGCTTTGTTCAG
TACCATGATGTCGAAGAGGGCCGCCGCGCCATGGAACATTTGCAGGGCATTGAGATCAAAGGACGCCGCATCCGT
AAGTCATGGCTTGCTCCTAGTCCCCAATGCCACTGTCCACCATGCTGACAAGGGACAAGATCTCGAGGTCTCTCG
GGTCCAGGAAAAGTCCAAAAAGGACCGCGGCCGCAGCCCTGACAGGGCAAGGGGACGTGACTCTGGCCGTCGAGG
TGATAAACACCACGGCGGTCGCGACGACTACCGGCCGGGGCGCAATCACTCGCCTCGTCGTCACGATCATCACCA
TGGACGCGACGGCGGCCCATCTCGCGACCGTGCCTTTCATGACGGTGGTCGAGGTGCCCGTGGCCGCTCACGGTC
GCCTGGATATGGACGCAACGATCAAGACTCTTATAGACGTCGTAGTCCCAGTCCATATGGCAGGTCGCGGCAAGA
GGTTGAAGTCGATCTTCCTCACAGGTTCGGGTCTGAGGTGCCAGACGTGCAGATTATCTTACAGCCAGATGTCAG
CCGCGACTTTGGCGCATGGGTCCAAGATGCTTTCAATGCCAAGGGCCTCAGGACCGAGGTCATGTACCTCCATCC
GCGATTTTCCAGAGACCATGTTATTCAGAGACAGGCGGCTGAAGGTGTTCATGGCGTCGTTGATTTGGACGCGCA
CGCACAGAGTGTCGGGCGCATCCCTGTTCAGGCCTTCAAGCGGTCTGTTGAAAGTGGCAAGGTTCGCTTCGACCA
GTACGTCAACCTGGATCCAAACACTGCTGCAGAGGTCATTTTGCGCGCCAAGTCTGTGGCCGCCGCTCCCTATGG
ACAAGGTTACGCCCCGGGGGCCGGATACGGCGCTTCGTATAACGGAGCAGTCCAACAACACCCTATTAACTATGG
TACCAATCCTTACGCAGCATCACAACACCAACAGCAGCCACACCAGCAGCAGCAGCAGCCGCCGCCGCAACACCA
GCAGCAACAATCACATCAGCAACAATCACACGCGCAACAACAGCATCAGCAGCCCGTCGCCCCAAGCGCCGCTGA
CATTGCAGGTTTGATGGGCCAGTTGGACAATGCGACTCTCCAGCGACTTTTGACCTCTATTCAAGGGTCGGGTCC
ATCTCACGGCCAGGGCGGCGTTGCCGCTGTACCCGGAGGCTACGGCGTGCCTGCTGTGGCTCAAACTGCGACTAG
TCCACAAGTCGATATACAGACTATCCTGGGCAGCCTCGGTGGCAATGCCTCCTCCACGCATCACCATGGCGCATC
CCATGCATCGTATGGCACCACGTATGGCGCCCAGTCCTCGGTGGCCTCAAACGCGGGTGTAAATGCGCCATCGGG
AGGTCAAGACACGACGGCGCAGGTGCAACACATCATGGCGCACCTCTCACGCTTCAGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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