Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|5505
Gene name
Location	Contig_509:10267..11106
Strand	-
Gene length (bp)	839
Transcript length (bp)	693
Coding sequence length (bp)	693
Protein length (aa)	231

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF09430	EMC7_beta-sandw	ER membrane protein complex subunit 7, beta-sandwich domain	1.7E-20	29	144

Swissprot hits

[Show all]

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q0IHY5\|EMC7_XENTR	ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1	49	171	2.0E-11
sp\|Q9EP72\|EMC7_MOUSE	ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1	49	171	9.0E-11
sp\|Q9NPA0\|EMC7_HUMAN	ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1	49	171	1.0E-10
sp\|A5PJA8\|EMC7_BOVIN	ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1	49	171	1.0E-10
sp\|Q4R5V2\|EMC7_MACFA	ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1	49	171	1.0E-10

[Show all]

[Show less]

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q0IHY5\|EMC7_XENTR	ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1	49	171	2.0E-11
sp\|Q9EP72\|EMC7_MOUSE	ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1	49	171	9.0E-11
sp\|Q9NPA0\|EMC7_HUMAN	ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1	49	171	1.0E-10
sp\|A5PJA8\|EMC7_BOVIN	ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1	49	171	1.0E-10
sp\|Q4R5V2\|EMC7_MACFA	ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1	49	171	1.0E-10
sp\|Q8VY97\|Y4213_ARATH	ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=2 SV=1	55	179	5.0E-08
sp\|Q5TYV0\|EMC7_DANRE	ER membrane protein complex subunit 7 OS=Danio rerio GN=emc7 PE=2 SV=1	49	171	5.0E-07

[Show less]

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 17	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	141	158	17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|5505 MHLLPLLLMPVALCTTLKLHLPATPSPVLLSSRTHATLSTLGTHLSAPLSAHNTIVFRNVTSGSYLVDIHCPSEA YRPLRVDVARDGSVTAWDTFRGNEWENLGEALPVKNGALEVRWMGSRQYYLERPGFSVLGILKNPMILMGLVSML IFVGMPYLMENMDPEMKAEFEAQQRKGGPMAAMMSGNAQAGNPLGDFDMAAFLAGSKKKEVTAPQSGDAASAPRD QGVRR*
Coding	>OphauG2\|5505 ATGCATCTCCTCCCGCTCCTCCTGATGCCCGTCGCCCTCTGCACGACACTCAAGCTTCATCTTCCGGCAACACCC AGCCCCGTATTGCTGTCATCGCGTACCCACGCCACGCTGTCCACGCTCGGAACTCATCTCAGCGCTCCTTTATCG GCGCACAACACCATCGTCTTCCGCAACGTCACCTCGGGCTCATACCTGGTAGACATACACTGTCCCAGCGAGGCC TACCGACCGCTGCGCGTTGACGTAGCGCGGGATGGCTCCGTGACTGCGTGGGACACGTTTCGTGGAAACGAGTGG GAGAACCTGGGCGAGGCGCTGCCCGTCAAGAATGGAGCTCTCGAGGTGCGCTGGATGGGGAGCCGCCAATATTAT CTGGAGAGACCAGGCTTTTCTGTATTGGGCATTCTCAAGAATCCCATGATTCTCATGGGGCTGGTCAGCATGCTC ATCTTTGTCGGCATGCCATATCTCATGGAAAACATGGACCCCGAGATGAAGGCCGAGTTTGAAGCACAGCAGCGC AAGGGTGGGCCCATGGCTGCCATGATGAGTGGCAATGCACAGGCCGGCAACCCGCTGGGCGACTTTGACATGGCT GCTTTTCTTGCCGGATCAAAGAAGAAAGAGGTCACTGCGCCGCAGTCTGGAGATGCGGCATCAGCCCCCAGAGAC CAGGGTGTCCGGAGATGA
Transcript	>OphauG2\|5505 ATGCATCTCCTCCCGCTCCTCCTGATGCCCGTCGCCCTCTGCACGACACTCAAGCTTCATCTTCCGGCAACACCC AGCCCCGTATTGCTGTCATCGCGTACCCACGCCACGCTGTCCACGCTCGGAACTCATCTCAGCGCTCCTTTATCG GCGCACAACACCATCGTCTTCCGCAACGTCACCTCGGGCTCATACCTGGTAGACATACACTGTCCCAGCGAGGCC TACCGACCGCTGCGCGTTGACGTAGCGCGGGATGGCTCCGTGACTGCGTGGGACACGTTTCGTGGAAACGAGTGG GAGAACCTGGGCGAGGCGCTGCCCGTCAAGAATGGAGCTCTCGAGGTGCGCTGGATGGGGAGCCGCCAATATTAT CTGGAGAGACCAGGCTTTTCTGTATTGGGCATTCTCAAGAATCCCATGATTCTCATGGGGCTGGTCAGCATGCTC ATCTTTGTCGGCATGCCATATCTCATGGAAAACATGGACCCCGAGATGAAGGCCGAGTTTGAAGCACAGCAGCGC AAGGGTGGGCCCATGGCTGCCATGATGAGTGGCAATGCACAGGCCGGCAACCCGCTGGGCGACTTTGACATGGCT GCTTTTCTTGCCGGATCAAAGAAGAAAGAGGTCACTGCGCCGCAGTCTGGAGATGCGGCATCAGCCCCCAGAGAC CAGGGTGTCCGGAGATGA
Gene	>OphauG2\|5505 ATGCATCTCCTCCCGCTCCTCCTGATGCCCGTCGCCCTCTGCACGACACTCAAGCTTCATCTTCCGGCAACACCC AGCCCCGTATTGCTGTCATCGCGTACCCACGCCACGCTGTCCACGCTCGGAACTCATCTCAGCGCTCCTTTATCG GCGCACAACACCATCGTCTTCCGCAACGTCACCTCGGGCTCATACCTGGTAGACATACACTGTCCCAGCGAGGCC TACCGACCGCTGCGCGTTGACGTAGCGCGGGATGGCTCCGTGACTGCGTGGGACACGTTTCGTGGAAACGAGTGG GAGAACCTGGGCGAGGCGCTGCCCGTCAAGAATGGAGCTCTCGAGGTGCGCTGGATGGGGAGCCGCCAATATTAT CTGGAGAGACCAGGCTGTCAGGCTGATGCTTCTCTTTCTCGCGCTTGCTGTGTGACGCTGCTAACGGCATGCAGT TTCTGTATTGGGCATTCTCAAGAATCCCATGATTCTCATGGGGCTGGTCAGCATGCTCATCTTTGTCGGCATGCC ATATCTCATGGAAAACAGTACGTCTTTGTACTCTAATCCGCGAAGCCACATGAAATGATGGAGGTGCAAGAGGCG AGGCACTTGCAAGTCGCTGACGCTTCATAGTGGACCCCGAGATGAAGGCCGAGTTTGAAGCACAGCAGCGCAAGG GTGGGCCCATGGCTGCCATGATGAGTGGCAATGCACAGGCCGGCAACCCGCTGGGCGACTTTGACATGGCTGCTT TTCTTGCCGGATCAAAGAAGAAAGAGGTCACTGCGCCGCAGTCTGGAGATGCGGCATCAGCCCCCAGAGACCAGG GTGTCCGGAGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail