© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|5503 |
| Gene name | |
| Location | Contig_509:5471..7814 |
| Strand | + |
| Gene length (bp) | 2343 |
| Transcript length (bp) | 2289 |
| Coding sequence length (bp) | 2289 |
| Protein length (aa) | 763 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04515 | Choline_transpo | Plasma-membrane choline transporter | 2.0E-30 | 409 | 733 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74441|CTL1_SCHPO | Choline transporter-like protein ctl1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctl1 PE=1 SV=1 | 301 | 761 | 1.0E-42 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 294 | 316 | 22 |
| 2 | 336 | 358 | 22 |
| 3 | 365 | 387 | 22 |
| 4 | 402 | 421 | 19 |
| 5 | 448 | 470 | 22 |
| 6 | 490 | 512 | 22 |
| 7 | 656 | 678 | 22 |
| 8 | 693 | 715 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5503 MFSEYASRFLAQSQSRFSTFGQADNDHSPQSNDWFSSRPGRPHRDAGRATKPLSSRGYPGYQQHGNGSRFGNIGF ASRMSAAQDAPLFHGTLDEFREDDDEEREREAADMFALQRSRRVAAASQLLESTESATSHASLEASAGEMDSPYT AHGPGPSIKNSRSSARSSHRHHPRQDTLFEDAEQSLQSGTHVGSPTAKGKMVDVGLDSYLEGNDDPPESLLGEDA LSDTSPPPFQRLRPQSERTPFMLNGNPLQGRPLHSTQLPHTSHSEHATPQESAQPANIMVEGELFRHDPFFAWIY MISFAAMMSTFVLVWLHTAPRKSPVGDTIYSTIQKSFDMLAVDTIVSVFVSLIWLATLRSFVRPLVSVILVAVPV IMLSFSLYAFISSFKGSTHGSSFQDSIMRWTSFVPAAASIVWLWLVVKGRRAIQQAIDILQFSSKILAQNPALLV VGFCCLGLVIVWTWAWLVMFTRVFMGGYFSKSLIRFVIQLSSWWLGAAFVLMYLWTLAIINAVHRATTAATVSQW YFHRNAGPVTPSKDIVLAALGHATSTVFGSICQSTLLSLMIRAPLLFLPRRLGTGITNMAAFWMPTPIMALTSPL TVTYSAIHSQNLATSARGLDQMEVISPTIPTTTLTPRALRARGQYNGLIPYRLAKLLLVATRFIMATGLGFAGWV ITAKQLRIQLPDGMGVRGSAYAYVVGLMASFIGYSVMGAVEGILSGIVDAVLVCYGSERRIERGHGRFCLEAAYL FGERRVESDGYA* |
| Coding | >OphauG2|5503 ATGTTTTCAGAGTATGCTTCTCGTTTTCTTGCCCAGTCTCAATCGCGATTTTCCACCTTTGGCCAAGCAGACAAC GACCACTCACCGCAATCCAACGACTGGTTCTCATCACGGCCTGGCCGTCCTCATAGAGACGCTGGCCGCGCCACT AAGCCTCTGAGTTCGCGCGGCTACCCCGGCTATCAGCAGCATGGCAATGGATCCCGCTTTGGCAATATCGGCTTT GCGTCCCGCATGTCGGCCGCCCAAGATGCCCCTCTCTTCCACGGCACCCTCGACGAGTTTCGAGAAGACGACGAC GAGGAGAGGGAACGCGAGGCAGCCGACATGTTCGCACTGCAACGGTCTCGTCGCGTAGCTGCTGCGAGTCAACTG CTCGAAAGCACCGAGTCGGCCACCAGCCACGCCTCACTAGAGGCAAGTGCTGGCGAAATGGACAGTCCGTATACT GCCCACGGACCCGGGCCAAGCATCAAGAACAGTCGCAGCAGTGCTAGAAGCAGCCATCGACATCACCCTAGACAA GACACCCTGTTTGAAGATGCAGAGCAATCTTTACAATCCGGAACACATGTTGGCAGCCCCACGGCCAAGGGCAAG ATGGTGGATGTAGGTCTCGACTCGTACCTCGAAGGCAATGATGATCCTCCAGAATCCCTACTTGGCGAAGATGCC CTGAGCGATACAAGTCCGCCGCCCTTCCAACGACTGAGACCGCAGTCAGAACGCACACCATTCATGCTAAATGGG AACCCTTTGCAGGGCAGGCCATTACATAGCACACAGTTGCCCCACACATCACACAGCGAGCACGCTACCCCCCAA GAATCCGCACAGCCGGCCAATATCATGGTGGAAGGCGAGCTCTTCAGGCACGACCCTTTTTTTGCCTGGATCTAC ATGATAAGCTTTGCCGCCATGATGTCGACGTTTGTTTTGGTCTGGCTCCATACAGCCCCCCGAAAGAGCCCCGTG GGCGACACGATATATTCCACCATTCAAAAGTCATTCGACATGCTGGCAGTCGATACGATAGTATCCGTCTTTGTC TCTCTCATCTGGCTGGCAACTCTTCGATCTTTTGTCCGTCCGCTTGTCAGTGTGATACTGGTTGCCGTTCCAGTC ATCATGCTGTCCTTTTCCTTGTACGCTTTCATCTCATCCTTCAAGGGCAGTACGCACGGATCAAGCTTCCAAGAC AGTATTATGCGCTGGACGTCGTTCGTTCCGGCAGCTGCGTCTATCGTCTGGCTTTGGCTGGTTGTCAAGGGGCGC AGAGCAATTCAACAGGCCATTGACATTCTACAGTTTTCGAGCAAGATCCTAGCTCAGAATCCGGCCCTGCTGGTG GTGGGATTCTGTTGCCTGGGCCTTGTAATTGTGTGGACTTGGGCGTGGCTGGTCATGTTCACACGTGTCTTCATG GGCGGCTACTTTTCCAAGTCGCTCATTCGATTCGTGATCCAGCTCTCGAGCTGGTGGCTCGGCGCGGCTTTTGTC CTCATGTATTTGTGGACCTTGGCCATCATCAATGCAGTTCATCGAGCAACAACGGCGGCAACAGTCTCACAGTGG TACTTTCATCGCAATGCCGGGCCCGTCACACCATCCAAAGATATTGTCCTGGCGGCGCTGGGACATGCTACATCG ACGGTTTTTGGGAGCATTTGTCAATCGACGCTATTGTCCCTCATGATTCGTGCTCCCTTGCTGTTCCTGCCGAGG AGACTTGGCACAGGCATCACAAACATGGCGGCGTTTTGGATGCCGACGCCAATCATGGCATTGACCAGCCCACTT ACCGTGACATACTCGGCCATTCACTCTCAAAACTTGGCCACGTCGGCTAGAGGCTTAGATCAGATGGAAGTGATT TCACCCACGATTCCCACGACAACCCTGACGCCACGGGCATTACGTGCACGTGGACAGTACAACGGTCTGATTCCC TATCGACTGGCCAAACTGCTGCTGGTGGCAACTCGCTTCATCATGGCGACTGGGCTCGGCTTTGCCGGTTGGGTT ATTACCGCGAAGCAGCTGCGGATCCAGCTGCCAGACGGCATGGGAGTGCGAGGATCGGCATATGCGTACGTCGTG GGCCTCATGGCGAGTTTTATTGGTTATTCAGTCATGGGTGCCGTGGAGGGAATCCTGAGTGGAATCGTGGACGCC GTGCTGGTATGCTACGGCAGCGAGAGACGCATCGAGAGGGGTCATGGGCGCTTCTGCCTTGAGGCGGCCTACCTG TTTGGCGAGCGGCGGGTCGAGTCGGATGGATACGCTTGA |
| Transcript | >OphauG2|5503 ATGTTTTCAGAGTATGCTTCTCGTTTTCTTGCCCAGTCTCAATCGCGATTTTCCACCTTTGGCCAAGCAGACAAC GACCACTCACCGCAATCCAACGACTGGTTCTCATCACGGCCTGGCCGTCCTCATAGAGACGCTGGCCGCGCCACT AAGCCTCTGAGTTCGCGCGGCTACCCCGGCTATCAGCAGCATGGCAATGGATCCCGCTTTGGCAATATCGGCTTT GCGTCCCGCATGTCGGCCGCCCAAGATGCCCCTCTCTTCCACGGCACCCTCGACGAGTTTCGAGAAGACGACGAC GAGGAGAGGGAACGCGAGGCAGCCGACATGTTCGCACTGCAACGGTCTCGTCGCGTAGCTGCTGCGAGTCAACTG CTCGAAAGCACCGAGTCGGCCACCAGCCACGCCTCACTAGAGGCAAGTGCTGGCGAAATGGACAGTCCGTATACT GCCCACGGACCCGGGCCAAGCATCAAGAACAGTCGCAGCAGTGCTAGAAGCAGCCATCGACATCACCCTAGACAA GACACCCTGTTTGAAGATGCAGAGCAATCTTTACAATCCGGAACACATGTTGGCAGCCCCACGGCCAAGGGCAAG ATGGTGGATGTAGGTCTCGACTCGTACCTCGAAGGCAATGATGATCCTCCAGAATCCCTACTTGGCGAAGATGCC CTGAGCGATACAAGTCCGCCGCCCTTCCAACGACTGAGACCGCAGTCAGAACGCACACCATTCATGCTAAATGGG AACCCTTTGCAGGGCAGGCCATTACATAGCACACAGTTGCCCCACACATCACACAGCGAGCACGCTACCCCCCAA GAATCCGCACAGCCGGCCAATATCATGGTGGAAGGCGAGCTCTTCAGGCACGACCCTTTTTTTGCCTGGATCTAC ATGATAAGCTTTGCCGCCATGATGTCGACGTTTGTTTTGGTCTGGCTCCATACAGCCCCCCGAAAGAGCCCCGTG GGCGACACGATATATTCCACCATTCAAAAGTCATTCGACATGCTGGCAGTCGATACGATAGTATCCGTCTTTGTC TCTCTCATCTGGCTGGCAACTCTTCGATCTTTTGTCCGTCCGCTTGTCAGTGTGATACTGGTTGCCGTTCCAGTC ATCATGCTGTCCTTTTCCTTGTACGCTTTCATCTCATCCTTCAAGGGCAGTACGCACGGATCAAGCTTCCAAGAC AGTATTATGCGCTGGACGTCGTTCGTTCCGGCAGCTGCGTCTATCGTCTGGCTTTGGCTGGTTGTCAAGGGGCGC AGAGCAATTCAACAGGCCATTGACATTCTACAGTTTTCGAGCAAGATCCTAGCTCAGAATCCGGCCCTGCTGGTG GTGGGATTCTGTTGCCTGGGCCTTGTAATTGTGTGGACTTGGGCGTGGCTGGTCATGTTCACACGTGTCTTCATG GGCGGCTACTTTTCCAAGTCGCTCATTCGATTCGTGATCCAGCTCTCGAGCTGGTGGCTCGGCGCGGCTTTTGTC CTCATGTATTTGTGGACCTTGGCCATCATCAATGCAGTTCATCGAGCAACAACGGCGGCAACAGTCTCACAGTGG TACTTTCATCGCAATGCCGGGCCCGTCACACCATCCAAAGATATTGTCCTGGCGGCGCTGGGACATGCTACATCG ACGGTTTTTGGGAGCATTTGTCAATCGACGCTATTGTCCCTCATGATTCGTGCTCCCTTGCTGTTCCTGCCGAGG AGACTTGGCACAGGCATCACAAACATGGCGGCGTTTTGGATGCCGACGCCAATCATGGCATTGACCAGCCCACTT ACCGTGACATACTCGGCCATTCACTCTCAAAACTTGGCCACGTCGGCTAGAGGCTTAGATCAGATGGAAGTGATT TCACCCACGATTCCCACGACAACCCTGACGCCACGGGCATTACGTGCACGTGGACAGTACAACGGTCTGATTCCC TATCGACTGGCCAAACTGCTGCTGGTGGCAACTCGCTTCATCATGGCGACTGGGCTCGGCTTTGCCGGTTGGGTT ATTACCGCGAAGCAGCTGCGGATCCAGCTGCCAGACGGCATGGGAGTGCGAGGATCGGCATATGCGTACGTCGTG GGCCTCATGGCGAGTTTTATTGGTTATTCAGTCATGGGTGCCGTGGAGGGAATCCTGAGTGGAATCGTGGACGCC GTGCTGGTATGCTACGGCAGCGAGAGACGCATCGAGAGGGGTCATGGGCGCTTCTGCCTTGAGGCGGCCTACCTG TTTGGCGAGCGGCGGGTCGAGTCGGATGGATACGCTTGA |
| Gene | >OphauG2|5503 ATGTTTTCAGAGTGTGCGACTTGACCAAGCCATTGCATAAACAGCCCTGTTTGCTAATGCTCTTTAGATGCTTCT CGTTTTCTTGCCCAGTCTCAATCGCGATTTTCCACCTTTGGCCAAGCAGACAACGACCACTCACCGCAATCCAAC GACTGGTTCTCATCACGGCCTGGCCGTCCTCATAGAGACGCTGGCCGCGCCACTAAGCCTCTGAGTTCGCGCGGC TACCCCGGCTATCAGCAGCATGGCAATGGATCCCGCTTTGGCAATATCGGCTTTGCGTCCCGCATGTCGGCCGCC CAAGATGCCCCTCTCTTCCACGGCACCCTCGACGAGTTTCGAGAAGACGACGACGAGGAGAGGGAACGCGAGGCA GCCGACATGTTCGCACTGCAACGGTCTCGTCGCGTAGCTGCTGCGAGTCAACTGCTCGAAAGCACCGAGTCGGCC ACCAGCCACGCCTCACTAGAGGCAAGTGCTGGCGAAATGGACAGTCCGTATACTGCCCACGGACCCGGGCCAAGC ATCAAGAACAGTCGCAGCAGTGCTAGAAGCAGCCATCGACATCACCCTAGACAAGACACCCTGTTTGAAGATGCA GAGCAATCTTTACAATCCGGAACACATGTTGGCAGCCCCACGGCCAAGGGCAAGATGGTGGATGTAGGTCTCGAC TCGTACCTCGAAGGCAATGATGATCCTCCAGAATCCCTACTTGGCGAAGATGCCCTGAGCGATACAAGTCCGCCG CCCTTCCAACGACTGAGACCGCAGTCAGAACGCACACCATTCATGCTAAATGGGAACCCTTTGCAGGGCAGGCCA TTACATAGCACACAGTTGCCCCACACATCACACAGCGAGCACGCTACCCCCCAAGAATCCGCACAGCCGGCCAAT ATCATGGTGGAAGGCGAGCTCTTCAGGCACGACCCTTTTTTTGCCTGGATCTACATGATAAGCTTTGCCGCCATG ATGTCGACGTTTGTTTTGGTCTGGCTCCATACAGCCCCCCGAAAGAGCCCCGTGGGCGACACGATATATTCCACC ATTCAAAAGTCATTCGACATGCTGGCAGTCGATACGATAGTATCCGTCTTTGTCTCTCTCATCTGGCTGGCAACT CTTCGATCTTTTGTCCGTCCGCTTGTCAGTGTGATACTGGTTGCCGTTCCAGTCATCATGCTGTCCTTTTCCTTG TACGCTTTCATCTCATCCTTCAAGGGCAGTACGCACGGATCAAGCTTCCAAGACAGTATTATGCGCTGGACGTCG TTCGTTCCGGCAGCTGCGTCTATCGTCTGGCTTTGGCTGGTTGTCAAGGGGCGCAGAGCAATTCAACAGGCCATT GACATTCTACAGTTTTCGAGCAAGATCCTAGCTCAGAATCCGGCCCTGCTGGTGGTGGGATTCTGTTGCCTGGGC CTTGTAATTGTGTGGACTTGGGCGTGGCTGGTCATGTTCACACGTGTCTTCATGGGCGGCTACTTTTCCAAGTCG CTCATTCGATTCGTGATCCAGCTCTCGAGCTGGTGGCTCGGCGCGGCTTTTGTCCTCATGTATTTGTGGACCTTG GCCATCATCAATGCAGTTCATCGAGCAACAACGGCGGCAACAGTCTCACAGTGGTACTTTCATCGCAATGCCGGG CCCGTCACACCATCCAAAGATATTGTCCTGGCGGCGCTGGGACATGCTACATCGACGGTTTTTGGGAGCATTTGT CAATCGACGCTATTGTCCCTCATGATTCGTGCTCCCTTGCTGTTCCTGCCGAGGAGACTTGGCACAGGCATCACA AACATGGCGGCGTTTTGGATGCCGACGCCAATCATGGCATTGACCAGCCCACTTACCGTGACATACTCGGCCATT CACTCTCAAAACTTGGCCACGTCGGCTAGAGGCTTAGATCAGATGGAAGTGATTTCACCCACGATTCCCACGACA ACCCTGACGCCACGGGCATTACGTGCACGTGGACAGTACAACGGTCTGATTCCCTATCGACTGGCCAAACTGCTG CTGGTGGCAACTCGCTTCATCATGGCGACTGGGCTCGGCTTTGCCGGTTGGGTTATTACCGCGAAGCAGCTGCGG ATCCAGCTGCCAGACGGCATGGGAGTGCGAGGATCGGCATATGCGTACGTCGTGGGCCTCATGGCGAGTTTTATT GGTTATTCAGTCATGGGTGCCGTGGAGGGAATCCTGAGTGGAATCGTGGACGCCGTGCTGGTATGCTACGGCAGC GAGAGACGCATCGAGAGGGGTCATGGGCGCTTCTGCCTTGAGGCGGCCTACCTGTTTGGCGAGCGGCGGGTCGAG TCGGATGGATACGCTTGA |