© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|5486 |
| Gene name | |
| Location | Contig_505:13010..13939 |
| Strand | + |
| Gene length (bp) | 929 |
| Transcript length (bp) | 675 |
| Coding sequence length (bp) | 675 |
| Protein length (aa) | 225 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00026 | Asp | Eukaryotic aspartyl protease | 1.8E-13 | 118 | 222 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4LAL9|CATD_CANLF | Cathepsin D OS=Canis lupus familiaris GN=CTSD PE=2 SV=1 | 83 | 201 | 4.0E-08 |
| sp|P07339|CATD_HUMAN | Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1 | 83 | 201 | 1.0E-07 |
| sp|P80209|CATD_BOVIN | Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2 | 104 | 201 | 2.0E-07 |
| sp|D4AIS3|OPSB_ARTBC | Probable aspartic-type endopeptidase OPSB OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=OPSB PE=3 SV=1 | 84 | 216 | 3.0E-07 |
| sp|D4DFT3|OPSB_TRIVH | Probable aspartic-type endopeptidase OPSB OS=Trichophyton verrucosum (strain HKI 0517) GN=OPSB PE=3 SV=1 | 118 | 216 | 3.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4LAL9|CATD_CANLF | Cathepsin D OS=Canis lupus familiaris GN=CTSD PE=2 SV=1 | 83 | 201 | 4.0E-08 |
| sp|P07339|CATD_HUMAN | Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1 | 83 | 201 | 1.0E-07 |
| sp|P80209|CATD_BOVIN | Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2 | 104 | 201 | 2.0E-07 |
| sp|D4AIS3|OPSB_ARTBC | Probable aspartic-type endopeptidase OPSB OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=OPSB PE=3 SV=1 | 84 | 216 | 3.0E-07 |
| sp|D4DFT3|OPSB_TRIVH | Probable aspartic-type endopeptidase OPSB OS=Trichophyton verrucosum (strain HKI 0517) GN=OPSB PE=3 SV=1 | 118 | 216 | 3.0E-07 |
| sp|Q9MZS8|CATD_SHEEP | Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1 | 104 | 201 | 4.0E-07 |
| sp|Q05744|CATD_CHICK | Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1 | 106 | 188 | 8.0E-07 |
| sp|Q6DYE7|RENI_CANLF | Renin OS=Canis lupus familiaris GN=REN PE=2 SV=1 | 103 | 202 | 3.0E-06 |
| sp|P24268|CATD_RAT | Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1 | 101 | 201 | 3.0E-06 |
| sp|O13340|CARP_PODAS | Podosporapepsin OS=Podospora anserina GN=PAPA PE=2 SV=1 | 100 | 190 | 5.0E-06 |
| sp|Q9D7R7|PEPC_MOUSE | Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1 | 115 | 188 | 6.0E-06 |
| sp|Q9XEC4|APA3_ARATH | Aspartic proteinase A3 OS=Arabidopsis thaliana GN=APA3 PE=1 SV=1 | 95 | 188 | 8.0E-06 |
| sp|C5FS55|CARP_ARTOC | Vacuolar protease A OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=PEP2 PE=3 SV=1 | 118 | 188 | 8.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5486 MAPAATALLLALALSTVNARPPQMQHGPQLPGSSLAPEIATTFARSRSGPIGRQSVSRKGAVQGAAQDSSDAQTV AAQETTGGPLSMQVVHGRAAPKLDKRTNGSSPEMLATRGDIAYYARLDIGTPPQKIYAQLDTGSFELWINPDCAK VDATDRQFCHSVGHYTSSQSTTAFVSNNTNMLRYGIGAANITYVLDYVSLPGAGPAMTKQPMQFGVATATQDQT* |
| Coding | >OphauG2|5486 ATGGCTCCTGCTGCCACAGCCTTGCTCTTGGCCCTCGCCTTGTCGACGGTAAACGCCCGTCCACCACAGATGCAG CACGGGCCCCAGCTGCCTGGCTCCTCACTGGCTCCCGAAATCGCTACCACCTTCGCCAGGTCTCGCTCTGGGCCC ATTGGCAGGCAGTCGGTGTCTCGGAAAGGTGCTGTTCAGGGCGCTGCCCAAGACTCAAGCGATGCGCAAACAGTT GCAGCCCAGGAGACCACTGGTGGTCCCTTATCCATGCAAGTAGTCCACGGGCGAGCAGCGCCAAAGCTGGACAAG AGAACAAACGGGTCATCGCCAGAAATGTTGGCTACCAGGGGCGACATTGCCTATTATGCCAGACTTGATATTGGC ACGCCTCCACAGAAGATATACGCTCAACTCGACACGGGCTCCTTTGAGCTCTGGATCAACCCCGACTGCGCCAAG GTGGACGCCACGGACCGGCAGTTCTGCCACAGCGTCGGCCACTACACGTCGTCCCAGTCCACGACGGCTTTTGTC AGCAACAACACCAACATGCTGCGCTACGGCATTGGCGCGGCAAACATCACGTATGTGCTGGATTACGTGTCTCTG CCTGGGGCAGGGCCTGCCATGACGAAGCAGCCCATGCAGTTTGGGGTTGCCACGGCGACGCAGGACCAAACCTGA |
| Transcript | >OphauG2|5486 ATGGCTCCTGCTGCCACAGCCTTGCTCTTGGCCCTCGCCTTGTCGACGGTAAACGCCCGTCCACCACAGATGCAG CACGGGCCCCAGCTGCCTGGCTCCTCACTGGCTCCCGAAATCGCTACCACCTTCGCCAGGTCTCGCTCTGGGCCC ATTGGCAGGCAGTCGGTGTCTCGGAAAGGTGCTGTTCAGGGCGCTGCCCAAGACTCAAGCGATGCGCAAACAGTT GCAGCCCAGGAGACCACTGGTGGTCCCTTATCCATGCAAGTAGTCCACGGGCGAGCAGCGCCAAAGCTGGACAAG AGAACAAACGGGTCATCGCCAGAAATGTTGGCTACCAGGGGCGACATTGCCTATTATGCCAGACTTGATATTGGC ACGCCTCCACAGAAGATATACGCTCAACTCGACACGGGCTCCTTTGAGCTCTGGATCAACCCCGACTGCGCCAAG GTGGACGCCACGGACCGGCAGTTCTGCCACAGCGTCGGCCACTACACGTCGTCCCAGTCCACGACGGCTTTTGTC AGCAACAACACCAACATGCTGCGCTACGGCATTGGCGCGGCAAACATCACGTATGTGCTGGATTACGTGTCTCTG CCTGGGGCAGGGCCTGCCATGACGAAGCAGCCCATGCAGTTTGGGGTTGCCACGGCGACGCAGGACCAAACCTGA |
| Gene | >OphauG2|5486 ATGGCTCCTGCTGCCACAGCCTTGCTCTTGGCCCTCGCCTTGTCGACGGTAAACGCCCGTCCACCACAGATGCAG CACGGGCCCCAGCTGCCTGGCTCCTCACTGGCTCCCGAAATCGCTACCACCTTCGCCAGGTCTCGCTCTGGGCCC ATTGGCAGGCAGTCGGTGTCTCGGAAAGGTGCTGTTCAGGGCGCTGCCCAAGACTCAAGCGATGCGCAAACAGTT GCAGCCCAGGAGACCACTGGTGGTCCCTTATCCATGCAAGTAGTCCACGGGCGAGCAGCGCCAAAGCTGGACAAG AGAACAAACGGGTCATCGCCAGAAATGTTGGCTACCAGGGGCGACATTGCCTATTATGCCAGACGTGCGTTCCAT CAAGAGTCCCCTGCATGAAGACCAAGGAGAAGACCAAGGACGAGAGGAAGAGGGGGAGAGAGAAAAAGAGAGAAA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAAGAAAAAGACCAAAAAAAGAGAGCTAATAATCA AATGCTGACAGTTGATATTGGCACGCCTCCACAGAAGATATACGCTCAACTCGACACGGGCTCCTTTGAGCTCTG GATCAACCCCGACTGCGCCAAGGTGGACGCCACGGACCGGCAGTTCTGCCACAGCGTCGGCCACTACACGTCGTC CCAGTCCACGACGGCTTTTGTCAGCAACAACACCAACATGCTGCGCTACGGCATTGGCGCGGCAAACATCACGTA TGTGCTGGATTACGTGTCTCTGCCTGGGGCAGGGCCTGCCATGACGAAGCAGCCCATGCAGTTTGGGGTTGCCAC GGCGACGCAGGACCAGTTTGCGGGAATCCTGGGCATTGGCTTTGGCCAAAACATGACGATTGGCTACAAAAACTT CATCGACCACTTGCAGGCGCAGAACCTGA |