Protein ID | OphauG2|548 |
Gene name | |
Location | Contig_113:4013..6010 |
Strand | + |
Gene length (bp) | 1997 |
Transcript length (bp) | 1896 |
Coding sequence length (bp) | 1896 |
Protein length (aa) | 632 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11626 | Rap1_C | TRF2-interacting telomeric protein/Rap1 - C terminal domain | 1.1E-21 | 526 | 625 |
PF08914 | Myb_DNA-bind_2 | Rap1 Myb domain | 2.5E-15 | 113 | 167 |
PF16589 | BRCT_2 | BRCT domain, a BRCA1 C-terminus domain | 2.5E-07 | 16 | 86 |
PF01388 | ARID | ARID/BRIGHT DNA binding domain | 3.1E-05 | 218 | 299 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003677 | DNA binding | Yes |
GO:0003674 | molecular_function | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0005488 | binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0097159 | organic cyclic compound binding | No |
Transcription Factor Class (based on PFAM domains) |
---|
ARID/BRIGHT |
Orthofinder run ID | 4 |
Orthogroup | 4339 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauG2|548 MAASPSPEDKGASQDAKIFHGLAFWVSSQVPMRRSILDDITDNGGQVVKLQDQAHYQIADHAIKNPPPASLSWKF VADSVKYRCVQLTDHYSLGPDPDAPRPAGSNGPARKLRVGYSREDDASLARWVMANNVGPLMGNHMYQDFEKENP RHTWQSWRNRFKTKLQPMGWEAIKRLAGTRPPPSDSVHDAAASDAARQEDQTSSPPAASDQNDDAREKHFWKEFE IYVDVCEMEIEPHHNIGRKTISLWQLYCAVEIQATSAAEVDWSRVATELGYHVTPNSTVPRRLQSCYDTNLAEFC DSMHAQTLQDDEEGREAPGYKASDQVPDQGTPHPHSLAQEASDRDESDSEAFGTPLTDRVPASTKKRALDSGSAR DTTHRAKRRQRYGPETEIPSTPDEKIGLGRCPSVEAMPFSRGPNQQRPVEGKETKQNTGDMTPSQQLQRENWAVS PIPLRLDHAPRSGQGEAGLGKQASPSQHMHGETPRPSFREATRAGDGLSPRKVAKPKKRGSPQKDQLESIEDWVE HYQSLGYTHDVVVEGLRRTTMKPGGLATFVMEHVNKGDGVPSHYAGIWTDDDDESLWLVNHYEGRGEAGATKMAK RAAKEMRRLLRKHGREGIDLRRRFLDAQSKM* |
Coding | >OphauG2|548 ATGGCCGCTTCTCCGTCTCCCGAGGACAAGGGCGCAAGCCAAGACGCCAAAATATTCCACGGCCTGGCATTCTGG GTCTCTAGCCAAGTGCCCATGCGCAGAAGCATTCTGGACGACATCACAGACAATGGCGGCCAAGTGGTCAAGCTA CAAGACCAAGCCCATTATCAAATCGCAGACCACGCAATCAAGAACCCCCCTCCGGCCTCCCTCTCGTGGAAATTC GTCGCCGACTCGGTCAAGTACAGATGCGTGCAGCTAACGGATCACTACTCCCTTGGTCCAGACCCCGATGCTCCC AGGCCTGCAGGCTCAAATGGTCCAGCGAGGAAGCTGAGGGTTGGGTACAGCCGTGAAGATGATGCTTCTCTGGCG CGCTGGGTCATGGCCAATAATGTTGGTCCGCTCATGGGCAATCACATGTACCAAGACTTTGAGAAGGAGAACCCA AGGCATACATGGCAATCATGGCGCAATCGATTCAAGACGAAACTGCAGCCAATGGGCTGGGAGGCCATCAAAAGA CTTGCAGGCACAAGGCCGCCACCAAGCGACAGCGTGCATGACGCAGCAGCCAGCGATGCAGCGAGACAAGAGGAC CAGACTTCAAGCCCCCCTGCTGCATCGGACCAAAACGACGACGCCCGTGAGAAACATTTCTGGAAGGAATTCGAA ATCTACGTCGACGTATGCGAAATGGAGATTGAACCACACCATAACATCGGACGCAAGACGATAAGTCTCTGGCAG CTCTACTGCGCTGTTGAAATTCAGGCCACCTCTGCTGCGGAAGTGGATTGGTCTCGAGTAGCAACCGAGCTGGGA TATCATGTTACACCCAATTCAACTGTTCCCCGCCGGTTGCAGAGCTGCTACGATACCAATCTTGCCGAGTTTTGC GACTCAATGCATGCACAAACTCTTCAAGACGATGAGGAGGGTAGAGAAGCACCAGGTTACAAAGCATCGGATCAA GTACCAGACCAAGGGACACCACATCCACATTCACTAGCCCAAGAAGCATCAGACCGAGATGAGAGCGATTCCGAG GCCTTTGGTACGCCATTAACTGATCGAGTGCCAGCAAGTACTAAGAAGCGCGCTCTTGACTCTGGCTCAGCAAGA GACACTACCCATCGGGCCAAGCGGCGGCAAAGGTACGGCCCAGAAACTGAAATTCCTTCAACACCAGACGAAAAG ATTGGACTCGGACGCTGCCCGTCAGTGGAAGCCATGCCGTTCTCTAGAGGACCGAATCAGCAGCGCCCTGTAGAG GGCAAAGAGACAAAGCAGAACACGGGGGACATGACTCCATCTCAGCAATTGCAACGTGAAAACTGGGCGGTAAGC CCGATACCTCTTCGGCTGGACCATGCACCTCGCAGCGGGCAAGGAGAGGCCGGTCTGGGGAAGCAAGCTTCTCCA TCACAACATATGCATGGCGAGACTCCAAGGCCAAGTTTCAGAGAAGCAACACGGGCTGGAGATGGCCTGTCGCCG CGAAAAGTCGCGAAGCCCAAGAAGCGAGGCTCGCCGCAAAAAGATCAACTCGAAAGCATCGAGGATTGGGTGGAG CACTATCAGTCGCTTGGCTATACGCACGACGTTGTAGTTGAAGGGCTGAGACGAACGACGATGAAGCCTGGCGGG CTGGCAACCTTTGTTATGGAGCACGTCAACAAGGGCGACGGCGTGCCGTCTCATTACGCAGGCATTTGGACCGAC GATGACGACGAGAGCTTGTGGCTGGTGAATCACTATGAGGGCAGGGGGGAGGCGGGTGCGACCAAGATGGCCAAG AGGGCGGCAAAGGAGATGCGACGGCTGCTGCGCAAACACGGTCGCGAAGGCATTGATTTGAGAAGACGCTTCTTG GATGCACAGAGCAAGATGTAG |
Transcript | >OphauG2|548 ATGGCCGCTTCTCCGTCTCCCGAGGACAAGGGCGCAAGCCAAGACGCCAAAATATTCCACGGCCTGGCATTCTGG GTCTCTAGCCAAGTGCCCATGCGCAGAAGCATTCTGGACGACATCACAGACAATGGCGGCCAAGTGGTCAAGCTA CAAGACCAAGCCCATTATCAAATCGCAGACCACGCAATCAAGAACCCCCCTCCGGCCTCCCTCTCGTGGAAATTC GTCGCCGACTCGGTCAAGTACAGATGCGTGCAGCTAACGGATCACTACTCCCTTGGTCCAGACCCCGATGCTCCC AGGCCTGCAGGCTCAAATGGTCCAGCGAGGAAGCTGAGGGTTGGGTACAGCCGTGAAGATGATGCTTCTCTGGCG CGCTGGGTCATGGCCAATAATGTTGGTCCGCTCATGGGCAATCACATGTACCAAGACTTTGAGAAGGAGAACCCA AGGCATACATGGCAATCATGGCGCAATCGATTCAAGACGAAACTGCAGCCAATGGGCTGGGAGGCCATCAAAAGA CTTGCAGGCACAAGGCCGCCACCAAGCGACAGCGTGCATGACGCAGCAGCCAGCGATGCAGCGAGACAAGAGGAC CAGACTTCAAGCCCCCCTGCTGCATCGGACCAAAACGACGACGCCCGTGAGAAACATTTCTGGAAGGAATTCGAA ATCTACGTCGACGTATGCGAAATGGAGATTGAACCACACCATAACATCGGACGCAAGACGATAAGTCTCTGGCAG CTCTACTGCGCTGTTGAAATTCAGGCCACCTCTGCTGCGGAAGTGGATTGGTCTCGAGTAGCAACCGAGCTGGGA TATCATGTTACACCCAATTCAACTGTTCCCCGCCGGTTGCAGAGCTGCTACGATACCAATCTTGCCGAGTTTTGC GACTCAATGCATGCACAAACTCTTCAAGACGATGAGGAGGGTAGAGAAGCACCAGGTTACAAAGCATCGGATCAA GTACCAGACCAAGGGACACCACATCCACATTCACTAGCCCAAGAAGCATCAGACCGAGATGAGAGCGATTCCGAG GCCTTTGGTACGCCATTAACTGATCGAGTGCCAGCAAGTACTAAGAAGCGCGCTCTTGACTCTGGCTCAGCAAGA GACACTACCCATCGGGCCAAGCGGCGGCAAAGGTACGGCCCAGAAACTGAAATTCCTTCAACACCAGACGAAAAG ATTGGACTCGGACGCTGCCCGTCAGTGGAAGCCATGCCGTTCTCTAGAGGACCGAATCAGCAGCGCCCTGTAGAG GGCAAAGAGACAAAGCAGAACACGGGGGACATGACTCCATCTCAGCAATTGCAACGTGAAAACTGGGCGGTAAGC CCGATACCTCTTCGGCTGGACCATGCACCTCGCAGCGGGCAAGGAGAGGCCGGTCTGGGGAAGCAAGCTTCTCCA TCACAACATATGCATGGCGAGACTCCAAGGCCAAGTTTCAGAGAAGCAACACGGGCTGGAGATGGCCTGTCGCCG CGAAAAGTCGCGAAGCCCAAGAAGCGAGGCTCGCCGCAAAAAGATCAACTCGAAAGCATCGAGGATTGGGTGGAG CACTATCAGTCGCTTGGCTATACGCACGACGTTGTAGTTGAAGGGCTGAGACGAACGACGATGAAGCCTGGCGGG CTGGCAACCTTTGTTATGGAGCACGTCAACAAGGGCGACGGCGTGCCGTCTCATTACGCAGGCATTTGGACCGAC GATGACGACGAGAGCTTGTGGCTGGTGAATCACTATGAGGGCAGGGGGGAGGCGGGTGCGACCAAGATGGCCAAG AGGGCGGCAAAGGAGATGCGACGGCTGCTGCGCAAACACGGTCGCGAAGGCATTGATTTGAGAAGACGCTTCTTG GATGCACAGAGCAAGATGTAG |
Gene | >OphauG2|548 ATGGCCGCTTCTCCGTCTCCCGAGGACAAGGGCGCAAGCCAAGACGCCAAAATATTCCACGGCCTGGCATTCTGG GTCTCTAGCCAAGTGCCCATGCGCAGAAGCATTCTGGACGACATCACAGCAAGTTGCCCAGTCTGCTACCCTCGA GCTTATGCTAACAATCAACAAGGACAATGGCGGCCAAGTGGTCAAGCTACAAGACCAAGCCCATTATCAAATCGC AGACCACGCAATCAAGAACCCCCCTCCGGCCTCCCTCTCGTGGAAATTCGTCGCCGACTCGGTCAAGTACAGATG CGTGCAGCTAACGGATCACTACTCCCTTGGTCCAGACCCCGATGCTCCCAGGCCTGCAGGCTCAAATGGTCCAGC GAGGAAGCTGAGGGTTGGGTACAGCCGTGAAGATGATGCTTCTCTGGCGCGCTGGGTCATGGCCAATAATGTTGG TCCGCTCATGGGCAATCACATGTACCAAGACTTTGAGAAGGAGGTGGGTTGCTTTGTTCTGCCCTTGACTTGATC ACCTGCTAACCCTTGTCAAGAACCCAAGGCATACATGGCAATCATGGCGCAATCGATTCAAGACGAAACTGCAGC CAATGGGCTGGGAGGCCATCAAAAGACTTGCAGGCACAAGGCCGCCACCAAGCGACAGCGTGCATGACGCAGCAG CCAGCGATGCAGCGAGACAAGAGGACCAGACTTCAAGCCCCCCTGCTGCATCGGACCAAAACGACGACGCCCGTG AGAAACATTTCTGGAAGGAATTCGAAATCTACGTCGACGTATGCGAAATGGAGATTGAACCACACCATAACATCG GACGCAAGACGATAAGTCTCTGGCAGCTCTACTGCGCTGTTGAAATTCAGGCCACCTCTGCTGCGGAAGTGGATT GGTCTCGAGTAGCAACCGAGCTGGGATATCATGTTACACCCAATTCAACTGTTCCCCGCCGGTTGCAGAGCTGCT ACGATACCAATCTTGCCGAGTTTTGCGACTCAATGCATGCACAAACTCTTCAAGACGATGAGGAGGGTAGAGAAG CACCAGGTTACAAAGCATCGGATCAAGTACCAGACCAAGGGACACCACATCCACATTCACTAGCCCAAGAAGCAT CAGACCGAGATGAGAGCGATTCCGAGGCCTTTGGTACGCCATTAACTGATCGAGTGCCAGCAAGTACTAAGAAGC GCGCTCTTGACTCTGGCTCAGCAAGAGACACTACCCATCGGGCCAAGCGGCGGCAAAGGTACGGCCCAGAAACTG AAATTCCTTCAACACCAGACGAAAAGATTGGACTCGGACGCTGCCCGTCAGTGGAAGCCATGCCGTTCTCTAGAG GACCGAATCAGCAGCGCCCTGTAGAGGGCAAAGAGACAAAGCAGAACACGGGGGACATGACTCCATCTCAGCAAT TGCAACGTGAAAACTGGGCGGTAAGCCCGATACCTCTTCGGCTGGACCATGCACCTCGCAGCGGGCAAGGAGAGG CCGGTCTGGGGAAGCAAGCTTCTCCATCACAACATATGCATGGCGAGACTCCAAGGCCAAGTTTCAGAGAAGCAA CACGGGCTGGAGATGGCCTGTCGCCGCGAAAAGTCGCGAAGCCCAAGAAGCGAGGCTCGCCGCAAAAAGATCAAC TCGAAAGCATCGAGGATTGGGTGGAGCACTATCAGTCGCTTGGCTATACGCACGACGTTGTAGTTGAAGGGCTGA GACGAACGACGATGAAGCCTGGCGGGCTGGCAACCTTTGTTATGGAGCACGTCAACAAGGGCGACGGCGTGCCGT CTCATTACGCAGGCATTTGGACCGACGATGACGACGAGAGCTTGTGGCTGGTGAATCACTATGAGGGCAGGGGGG AGGCGGGTGCGACCAAGATGGCCAAGAGGGCGGCAAAGGAGATGCGACGGCTGCTGCGCAAACACGGTCGCGAAG GCATTGATTTGAGAAGACGCTTCTTGGATGCACAGAGCAAGATGTAG |