Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|5476
Gene name
Location	Contig_504:8504..9142
Strand	+
Gene length (bp)	638
Transcript length (bp)	552
Coding sequence length (bp)	552
Protein length (aa)	184

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08561	Ribosomal_L37	Mitochondrial ribosomal protein L37	7.1E-34	52	182

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9Y7U8\|RM37_SCHPO	54S ribosomal protein L37, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl37 PE=3 SV=1	18	91	4.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 18	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|5476 MLCSRCLTSATSKKGLALLRSFSASSRLRLADPELSTPITQAGEAPQPTSTVRSICRQGTVLRGLNYIKGGQDPV ALRDDEYPEWLWACLDFKKSGASPDDPNAGDEFSAKTKKTASKTSADGTILAVEPKIPIQHQSINLPGSEGDSIE DKIAAGARRDELKRAMRKERKAKIKESNFLKSM*
Coding	>OphauG2\|5476 ATGCTCTGCTCGCGTTGTCTGACATCAGCTACATCAAAAAAAGGCTTAGCCTTACTACGATCGTTCTCAGCATCA TCACGACTTCGTCTGGCCGACCCCGAGCTCTCTACGCCCATTACCCAAGCTGGCGAGGCACCCCAGCCAACAAGC ACTGTGAGATCGATCTGTCGTCAAGGCACCGTGCTGCGCGGTCTCAATTATATCAAGGGTGGGCAAGACCCCGTA GCACTACGCGACGATGAATATCCCGAATGGCTGTGGGCCTGTCTCGACTTTAAGAAGAGCGGCGCAAGCCCCGAT GATCCCAATGCCGGTGACGAGTTTTCTGCCAAGACGAAAAAGACTGCTTCCAAGACGTCTGCCGACGGCACCATA CTAGCAGTGGAGCCCAAGATTCCGATACAACATCAATCCATCAACCTGCCAGGCAGTGAAGGAGATAGTATTGAG GATAAAATTGCGGCTGGAGCCAGGCGGGATGAATTAAAAAGAGCCATGCGAAAGGAGAGGAAGGCCAAGATCAAA GAAAGCAACTTCCTCAAGTCGATGTAG
Transcript	>OphauG2\|5476 ATGCTCTGCTCGCGTTGTCTGACATCAGCTACATCAAAAAAAGGCTTAGCCTTACTACGATCGTTCTCAGCATCA TCACGACTTCGTCTGGCCGACCCCGAGCTCTCTACGCCCATTACCCAAGCTGGCGAGGCACCCCAGCCAACAAGC ACTGTGAGATCGATCTGTCGTCAAGGCACCGTGCTGCGCGGTCTCAATTATATCAAGGGTGGGCAAGACCCCGTA GCACTACGCGACGATGAATATCCCGAATGGCTGTGGGCCTGTCTCGACTTTAAGAAGAGCGGCGCAAGCCCCGAT GATCCCAATGCCGGTGACGAGTTTTCTGCCAAGACGAAAAAGACTGCTTCCAAGACGTCTGCCGACGGCACCATA CTAGCAGTGGAGCCCAAGATTCCGATACAACATCAATCCATCAACCTGCCAGGCAGTGAAGGAGATAGTATTGAG GATAAAATTGCGGCTGGAGCCAGGCGGGATGAATTAAAAAGAGCCATGCGAAAGGAGAGGAAGGCCAAGATCAAA GAAAGCAACTTCCTCAAGTCGATGTAG
Gene	>OphauG2\|5476 ATGCTCTGCTCGCGTTGTCTGACATCAGCTACATCAAAAAAAGGCTTAGCCTTACTACGATCGTTCTCAGCATCA TCACGACTTCGTCTGGCCGACCCCGAGCTCTCTACGCCCATTACCCAAGCTGGCGAGGCACCCCAGCCAACAAGC ACTGTGAGATCGATCTGTCGTCAAGGCACCGTGCTGCGCGGTCTCAATTATATCAAGGGTGGGCAAGACCCCGTA GCACTACGCGACGATGAATATCCCGAATGGCTGTGGGCCTGTCTCGACTTTAAGAAGAGCGGCGCAAGCCCCGAT GATCCCAATGCCGGTGACGAGTTTTGTAAGTTGATGCTGCTGAGTTGACTCTCGGCTTGCCCTCGGCGAGTTAAC TAGATGCAGCAAAATCGAAAACACAGAGACGCTTAGCTGCCAAGACGAAAAAGACTGCTTCCAAGACGTCTGCCG ACGGCACCATACTAGCAGTGGAGCCCAAGATTCCGATACAACATCAATCCATCAACCTGCCAGGCAGTGAAGGAG ATAGTATTGAGGATAAAATTGCGGCTGGAGCCAGGCGGGATGAATTAAAAAGAGCCATGCGAAAGGAGAGGAAGG CCAAGATCAAAGAAAGCAACTTCCTCAAGTCGATGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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