© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|5456 |
| Gene name | |
| Location | Contig_50:27252..28300 |
| Strand | + |
| Gene length (bp) | 1048 |
| Transcript length (bp) | 981 |
| Coding sequence length (bp) | 981 |
| Protein length (aa) | 327 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00432 | Prenyltrans | Prenyltransferase and squalene oxidase repeat | 3.8E-09 | 63 | 103 |
| PF00432 | Prenyltrans | Prenyltransferase and squalene oxidase repeat | 3.7E-04 | 118 | 157 |
| PF00432 | Prenyltrans | Prenyltransferase and squalene oxidase repeat | 3.0E-12 | 163 | 205 |
| PF00432 | Prenyltrans | Prenyltransferase and squalene oxidase repeat | 3.5E-08 | 210 | 252 |
| PF00432 | Prenyltrans | Prenyltransferase and squalene oxidase repeat | 3.5E-11 | 258 | 302 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B0G172|PGTB2_DICDI | Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1 | 11 | 323 | 3.0E-117 |
| sp|P20133|PGTB2_YEAST | Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3 | 12 | 325 | 3.0E-116 |
| sp|P53611|PGTB2_HUMAN | Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2 | 1 | 323 | 2.0E-112 |
| sp|Q5E9B3|PGTB2_BOVIN | Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1 | 1 | 326 | 3.0E-112 |
| sp|P53612|PGTB2_MOUSE | Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2 | 4 | 323 | 8.0E-111 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B0G172|PGTB2_DICDI | Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1 | 11 | 323 | 3.0E-117 |
| sp|P20133|PGTB2_YEAST | Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3 | 12 | 325 | 3.0E-116 |
| sp|P53611|PGTB2_HUMAN | Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2 | 1 | 323 | 2.0E-112 |
| sp|Q5E9B3|PGTB2_BOVIN | Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1 | 1 | 326 | 3.0E-112 |
| sp|P53612|PGTB2_MOUSE | Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2 | 4 | 323 | 8.0E-111 |
| sp|Q08603|PGTB2_RAT | Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1 | 4 | 323 | 1.0E-110 |
| sp|P46960|PGTB2_SCHPO | Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1 | 17 | 323 | 2.0E-105 |
| sp|O93830|PGTB2_CANAX | Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1 | 17 | 326 | 2.0E-102 |
| sp|P41992|GGTB2_CAEEL | Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2 | 17 | 320 | 2.0E-101 |
| sp|O13782|FNTB_SCHPO | Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1 | 14 | 303 | 3.0E-34 |
| sp|P49356|FNTB_HUMAN | Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1 | 45 | 313 | 3.0E-30 |
| sp|Q8K2I1|FNTB_MOUSE | Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb PE=1 SV=1 | 45 | 321 | 3.0E-29 |
| sp|Q02293|FNTB_RAT | Protein farnesyltransferase subunit beta OS=Rattus norvegicus GN=Fntb PE=1 SV=1 | 45 | 321 | 3.0E-29 |
| sp|Q8BUY9|PGTB1_MOUSE | Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus GN=Pggt1b PE=1 SV=1 | 17 | 323 | 3.0E-29 |
| sp|P53609|PGTB1_HUMAN | Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2 | 17 | 324 | 6.0E-29 |
| sp|Q55D51|FNTB_DICDI | Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1 | 85 | 303 | 7.0E-29 |
| sp|P53610|PGTB1_RAT | Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus GN=Pggt1b PE=1 SV=1 | 17 | 323 | 7.0E-29 |
| sp|P49355|FNTB_BOVIN | Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2 SV=1 | 45 | 313 | 8.0E-29 |
| sp|Q55DA3|PGTB1_DICDI | Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium discoideum GN=pggt1b PE=2 SV=1 | 91 | 317 | 8.0E-29 |
| sp|Q5EAD5|PGTB1_BOVIN | Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1 | 17 | 323 | 1.0E-28 |
| sp|O80642|PGTB1_ARATH | Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana GN=GGB PE=1 SV=1 | 87 | 316 | 1.0E-27 |
| sp|P22007|FNTB_YEAST | Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1 SV=2 | 87 | 324 | 5.0E-26 |
| sp|Q04903|FNTB_PEA | Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=1 SV=1 | 45 | 282 | 3.0E-24 |
| sp|P32434|PGTB1_SCHPO | Geranylgeranyl transferase type-1 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwg2 PE=3 SV=1 | 91 | 299 | 3.0E-23 |
| sp|Q38920|FNTB_ARATH | Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana GN=FTB PE=1 SV=3 | 45 | 256 | 3.0E-17 |
| sp|P18898|PGTB1_YEAST | Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1 SV=2 | 115 | 326 | 3.0E-13 |
| sp|Q38920|FNTB_ARATH | Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana GN=FTB PE=1 SV=3 | 147 | 301 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5456 MLSKSSSLDSRLAIQAHVRYIQSLDTKRDELDYWLTEHLRLNGVYWGLTALHLLARPEALPRQETIDFVLSCQHQ SGGFGAAPDHDAHMLSTVSAVQILFMVGALDELDRRGPGKANVGKYIADLQNRQTGSFCGDAWGEEDTRFLYGAF NALSLLGLLSMVNVDKAVSYIASCANFDGGYGVRPGAESHSGQVFTCLAALSIAGRLDTIDEDKLACWLSERQTR AGGLNGRPEKKEDVCYSWWVLSSLAMINRTHWIDREALVGFILDSQDSESGGISDRPGDMVDVWHTCFGIAGLSL LGYPGLEAVDPVYCMPKTTIEQLVRR* |
| Coding | >OphauG2|5456 ATGCTGAGCAAATCGTCGTCTCTAGACTCCAGACTTGCCATACAAGCCCATGTGAGGTATATCCAAAGCTTGGAC ACCAAAAGAGATGAACTCGACTACTGGTTGACAGAGCACCTGCGCCTCAACGGCGTATATTGGGGCTTAACCGCT CTCCACCTCCTCGCACGGCCTGAGGCCCTACCCAGACAGGAAACAATCGACTTTGTGCTCTCCTGTCAGCATCAA AGTGGCGGTTTTGGAGCAGCACCTGACCACGATGCCCACATGCTATCCACAGTTAGTGCTGTGCAGATTCTCTTC ATGGTCGGCGCTTTAGACGAACTCGACCGTCGAGGCCCTGGAAAGGCCAACGTTGGAAAATATATCGCAGATTTA CAAAATCGCCAGACTGGCAGTTTTTGCGGCGATGCGTGGGGCGAAGAAGACACACGTTTTCTCTATGGCGCTTTC AACGCCTTGTCTCTTCTGGGACTTTTGTCTATGGTCAATGTGGACAAGGCCGTTAGCTATATAGCATCGTGTGCC AATTTTGACGGCGGATACGGTGTTAGGCCTGGTGCGGAGTCGCATTCGGGCCAGGTCTTTACATGTCTTGCGGCT TTAAGTATTGCCGGTCGGCTTGATACCATTGATGAGGATAAGCTAGCTTGTTGGCTCAGCGAGCGACAGACACGT GCGGGTGGTCTTAATGGACGTCCCGAGAAAAAGGAAGATGTCTGTTATAGCTGGTGGGTGCTCAGCAGCCTCGCC ATGATTAATCGCACGCATTGGATCGACCGCGAGGCTCTTGTGGGCTTCATTCTCGACAGCCAAGATAGCGAATCT GGTGGCATATCAGACCGACCTGGCGACATGGTTGATGTTTGGCACACATGCTTTGGAATTGCAGGGCTAAGTCTT CTTGGGTATCCCGGTTTGGAAGCCGTTGATCCTGTCTACTGCATGCCCAAGACAACAATTGAGCAGCTAGTCAGA AGATAG |
| Transcript | >OphauG2|5456 ATGCTGAGCAAATCGTCGTCTCTAGACTCCAGACTTGCCATACAAGCCCATGTGAGGTATATCCAAAGCTTGGAC ACCAAAAGAGATGAACTCGACTACTGGTTGACAGAGCACCTGCGCCTCAACGGCGTATATTGGGGCTTAACCGCT CTCCACCTCCTCGCACGGCCTGAGGCCCTACCCAGACAGGAAACAATCGACTTTGTGCTCTCCTGTCAGCATCAA AGTGGCGGTTTTGGAGCAGCACCTGACCACGATGCCCACATGCTATCCACAGTTAGTGCTGTGCAGATTCTCTTC ATGGTCGGCGCTTTAGACGAACTCGACCGTCGAGGCCCTGGAAAGGCCAACGTTGGAAAATATATCGCAGATTTA CAAAATCGCCAGACTGGCAGTTTTTGCGGCGATGCGTGGGGCGAAGAAGACACACGTTTTCTCTATGGCGCTTTC AACGCCTTGTCTCTTCTGGGACTTTTGTCTATGGTCAATGTGGACAAGGCCGTTAGCTATATAGCATCGTGTGCC AATTTTGACGGCGGATACGGTGTTAGGCCTGGTGCGGAGTCGCATTCGGGCCAGGTCTTTACATGTCTTGCGGCT TTAAGTATTGCCGGTCGGCTTGATACCATTGATGAGGATAAGCTAGCTTGTTGGCTCAGCGAGCGACAGACACGT GCGGGTGGTCTTAATGGACGTCCCGAGAAAAAGGAAGATGTCTGTTATAGCTGGTGGGTGCTCAGCAGCCTCGCC ATGATTAATCGCACGCATTGGATCGACCGCGAGGCTCTTGTGGGCTTCATTCTCGACAGCCAAGATAGCGAATCT GGTGGCATATCAGACCGACCTGGCGACATGGTTGATGTTTGGCACACATGCTTTGGAATTGCAGGGCTAAGTCTT CTTGGGTATCCCGGTTTGGAAGCCGTTGATCCTGTCTACTGCATGCCCAAGACAACAATTGAGCAGCTAGTCAGA AGATAG |
| Gene | >OphauG2|5456 ATGCTGAGCAAATCGTCGTCTCTAGACTCCAGACTTGCCATACAAGCCCATGTGAGGTATATCCAAAGCTTGGAC ACCAAAAGAGATGAACTCGACTACTGGTTGACAGAGCACCTGCGCCTCAACGGCGTATATTGGGGCTTAACCGCT CTCCACCTCCTCGCACGGCCTGAGGCCCTACCCAGACAGGAAACAATCGACTTTGTGCTCTCCTGTCAGCATCAA AGTGGCGGTTTTGGAGCAGCACCTGACCACGATGCCCACATGCTATCCACAGTTAGTGCTGTGCAGATTCTCTTC ATGGTCGGCGCTTTAGACGAACTCGACCGTCGAGGCCCTGGAAAGGCCAACGTTGGAAAATGTACGTGCTGTGCT GCCGCGATCTGCAAACTGTTGTAGGTGGCAATTGTGCTAACACTGGGCAACAGATATCGCAGATTTACAAAATCG CCAGACTGGCAGTTTTTGCGGCGATGCGTGGGGCGAAGAAGACACACGTTTTCTCTATGGCGCTTTCAACGCCTT GTCTCTTCTGGGACTTTTGTCTATGGTCAATGTGGACAAGGCCGTTAGCTATATAGCATCGTGTGCCAATTTTGA CGGCGGATACGGTGTTAGGCCTGGTGCGGAGTCGCATTCGGGCCAGGTCTTTACATGTCTTGCGGCTTTAAGTAT TGCCGGTCGGCTTGATACCATTGATGAGGATAAGCTAGCTTGTTGGCTCAGCGAGCGACAGACACGTGCGGGTGG TCTTAATGGACGTCCCGAGAAAAAGGAAGATGTCTGTTATAGCTGGTGGGTGCTCAGCAGCCTCGCCATGATTAA TCGCACGCATTGGATCGACCGCGAGGCTCTTGTGGGCTTCATTCTCGACAGCCAAGATAGCGAATCTGGTGGCAT ATCAGACCGACCTGGCGACATGGTTGATGTTTGGCACACATGCTTTGGAATTGCAGGGCTAAGTCTTCTTGGGTA TCCCGGTTTGGAAGCCGTTGATCCTGTCTACTGCATGCCCAAGACAACAATTGAGCAGCTAGTCAGAAGATAG |