© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|5414 |
| Gene name | |
| Location | Contig_5:3599..4709 |
| Strand | - |
| Gene length (bp) | 1110 |
| Transcript length (bp) | 1029 |
| Coding sequence length (bp) | 1029 |
| Protein length (aa) | 343 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05652 | DcpS | Scavenger mRNA decapping enzyme (DcpS) N-terminal | 1.1E-32 | 13 | 134 |
| PF11969 | DcpS_C | Scavenger mRNA decapping enzyme C-term binding | 4.6E-29 | 164 | 283 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P7C9|DCPS_SCHPO | m7GpppX diphosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nhm1 PE=1 SV=1 | 13 | 334 | 7.0E-59 |
| sp|Q06151|DCPS_YEAST | m7GpppX diphosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCS1 PE=1 SV=1 | 12 | 327 | 8.0E-58 |
| sp|Q12123|DCS2_YEAST | Inactive diphosphatase DCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCS2 PE=1 SV=3 | 8 | 331 | 2.0E-50 |
| sp|D3K0N9|DCPS_ASCSU | m7GpppX diphosphatase OS=Ascaris suum PE=1 SV=1 | 17 | 303 | 4.0E-44 |
| sp|G5EFS4|DCPS_CAEEL | m7GpppX diphosphatase OS=Caenorhabditis elegans GN=dcs-1 PE=1 SV=1 | 2 | 302 | 1.0E-36 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P7C9|DCPS_SCHPO | m7GpppX diphosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nhm1 PE=1 SV=1 | 13 | 334 | 7.0E-59 |
| sp|Q06151|DCPS_YEAST | m7GpppX diphosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCS1 PE=1 SV=1 | 12 | 327 | 8.0E-58 |
| sp|Q12123|DCS2_YEAST | Inactive diphosphatase DCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCS2 PE=1 SV=3 | 8 | 331 | 2.0E-50 |
| sp|D3K0N9|DCPS_ASCSU | m7GpppX diphosphatase OS=Ascaris suum PE=1 SV=1 | 17 | 303 | 4.0E-44 |
| sp|G5EFS4|DCPS_CAEEL | m7GpppX diphosphatase OS=Caenorhabditis elegans GN=dcs-1 PE=1 SV=1 | 2 | 302 | 1.0E-36 |
| sp|Q96C86|DCPS_HUMAN | m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2 | 17 | 302 | 2.0E-34 |
| sp|Q8MJJ7|DCPS_BOVIN | m7GpppX diphosphatase OS=Bos taurus GN=DCPS PE=2 SV=1 | 17 | 281 | 2.0E-34 |
| sp|Q8MIZ3|DCPS_PIG | m7GpppX diphosphatase OS=Sus scrofa GN=DCPS PE=2 SV=1 | 17 | 300 | 2.0E-33 |
| sp|Q9DAR7|DCPS_MOUSE | m7GpppX diphosphatase OS=Mus musculus GN=Dcps PE=1 SV=1 | 17 | 302 | 2.0E-33 |
| sp|Q8K4F7|DCPS_RAT | m7GpppX diphosphatase OS=Rattus norvegicus GN=Dcps PE=2 SV=1 | 17 | 302 | 6.0E-33 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0000290 | deadenylation-dependent decapping of nuclear-transcribed mRNA | Yes |
| GO:0050789 | regulation of biological process | No |
| GO:0000956 | nuclear-transcribed mRNA catabolic process | No |
| GO:0110156 | methylguanosine-cap decapping | No |
| GO:0010605 | negative regulation of macromolecule metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0034655 | nucleobase-containing compound catabolic process | No |
| GO:0044270 | cellular nitrogen compound catabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009056 | catabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0010629 | negative regulation of gene expression | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0006402 | mRNA catabolic process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0009892 | negative regulation of metabolic process | No |
| GO:0048519 | negative regulation of biological process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0046700 | heterocycle catabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0019439 | aromatic compound catabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006401 | RNA catabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:1901361 | organic cyclic compound catabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0110154 | RNA decapping | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5414 MDAVVEKQRAEALIPRFELERILNQDQAGRRISLLGKIDGQPALLSVERAPFSLDEGWLSSLPRRFAKVQNLGVN DVYSWTLAVFTGQDELQQDTSRDEKQEAAQDDKDDFFADVKLNLIFPCTPAHVAKYSKQAVRLVVESPQTYHDAV RPYMQRKRQHGQLNWVYNIIDGKTEVEDVIYRTPRGQSGDEGFLLAPDLNWDRSTLEALHLLALVERRDMWSLRD IKKKHIAWLEHMRSKLVAATVATYPSIQPDQLKLYVHYQPTYYHFHIHIVHVALEAGATQATGKAVGLDSIIETL RVMAGNDETGMDTLTMSYTLGEASELWTHVFAPLKATLQSRQ* |
| Coding | >OphauG2|5414 ATGGATGCAGTGGTTGAAAAGCAGCGTGCCGAGGCGCTCATTCCGCGCTTTGAGCTGGAGCGCATACTCAACCAG GATCAGGCTGGTCGGCGGATTAGTCTGCTGGGCAAGATTGATGGCCAGCCTGCGCTGCTCAGTGTTGAGCGGGCT CCCTTTTCCTTGGACGAGGGCTGGCTGTCTAGCCTGCCGCGGCGGTTTGCAAAGGTGCAGAACCTGGGCGTGAAT GATGTGTATAGTTGGACGTTGGCGGTGTTTACCGGGCAAGACGAATTGCAGCAAGATACAAGTCGAGACGAGAAA CAAGAGGCAGCACAAGACGACAAGGACGACTTTTTTGCCGACGTCAAGCTCAACCTCATCTTTCCCTGCACGCCG GCGCACGTGGCAAAGTACTCCAAGCAGGCGGTGCGCCTCGTCGTCGAGTCGCCGCAGACATATCACGATGCCGTC AGGCCCTACATGCAGCGCAAGCGCCAACACGGCCAACTCAACTGGGTCTACAACATTATCGACGGCAAGACCGAG GTGGAAGACGTCATTTACAGGACGCCGCGCGGCCAGTCCGGCGACGAGGGCTTCTTGCTGGCGCCCGACCTCAAC TGGGACCGCAGCACGCTAGAGGCGCTGCATCTACTGGCGCTGGTGGAGCGGCGCGACATGTGGTCGCTGCGCGAT ATCAAAAAGAAGCATATTGCCTGGCTTGAGCACATGAGGTCCAAGCTCGTTGCTGCCACCGTGGCAACCTATCCC TCCATCCAGCCCGACCAGCTAAAGCTTTATGTACACTACCAGCCCACCTACTACCACTTCCACATACACATTGTC CACGTCGCGCTCGAGGCCGGTGCCACGCAGGCAACCGGCAAGGCCGTGGGGCTGGACAGCATCATTGAGACGCTC AGGGTCATGGCGGGCAATGACGAGACGGGCATGGACACTCTAACCATGAGCTACACGCTCGGCGAGGCCAGTGAG CTCTGGACGCATGTCTTTGCGCCCCTCAAAGCGACTTTGCAATCTCGTCAATAG |
| Transcript | >OphauG2|5414 ATGGATGCAGTGGTTGAAAAGCAGCGTGCCGAGGCGCTCATTCCGCGCTTTGAGCTGGAGCGCATACTCAACCAG GATCAGGCTGGTCGGCGGATTAGTCTGCTGGGCAAGATTGATGGCCAGCCTGCGCTGCTCAGTGTTGAGCGGGCT CCCTTTTCCTTGGACGAGGGCTGGCTGTCTAGCCTGCCGCGGCGGTTTGCAAAGGTGCAGAACCTGGGCGTGAAT GATGTGTATAGTTGGACGTTGGCGGTGTTTACCGGGCAAGACGAATTGCAGCAAGATACAAGTCGAGACGAGAAA CAAGAGGCAGCACAAGACGACAAGGACGACTTTTTTGCCGACGTCAAGCTCAACCTCATCTTTCCCTGCACGCCG GCGCACGTGGCAAAGTACTCCAAGCAGGCGGTGCGCCTCGTCGTCGAGTCGCCGCAGACATATCACGATGCCGTC AGGCCCTACATGCAGCGCAAGCGCCAACACGGCCAACTCAACTGGGTCTACAACATTATCGACGGCAAGACCGAG GTGGAAGACGTCATTTACAGGACGCCGCGCGGCCAGTCCGGCGACGAGGGCTTCTTGCTGGCGCCCGACCTCAAC TGGGACCGCAGCACGCTAGAGGCGCTGCATCTACTGGCGCTGGTGGAGCGGCGCGACATGTGGTCGCTGCGCGAT ATCAAAAAGAAGCATATTGCCTGGCTTGAGCACATGAGGTCCAAGCTCGTTGCTGCCACCGTGGCAACCTATCCC TCCATCCAGCCCGACCAGCTAAAGCTTTATGTACACTACCAGCCCACCTACTACCACTTCCACATACACATTGTC CACGTCGCGCTCGAGGCCGGTGCCACGCAGGCAACCGGCAAGGCCGTGGGGCTGGACAGCATCATTGAGACGCTC AGGGTCATGGCGGGCAATGACGAGACGGGCATGGACACTCTAACCATGAGCTACACGCTCGGCGAGGCCAGTGAG CTCTGGACGCATGTCTTTGCGCCCCTCAAAGCGACTTTGCAATCTCGTCAATAG |
| Gene | >OphauG2|5414 ATGGATGCAGTGGTTGAAAAGCAGCGTGCCGAGGCGCTCATTCCGCGCTTTGAGCTGGAGCGCATACTCAACCAG GGTGAGAGCATTTTGACTCGGCATCTCAAAACACCAAAAACACATGTTTAGAGAGGCCAGGCCTTGCTAACGCGC TGGTTAGATCAGGCTGGTCGGCGGATTAGTCTGCTGGGCAAGATTGATGGCCAGCCTGCGCTGCTCAGTGTTGAG CGGGCTCCCTTTTCCTTGGACGAGGGCTGGCTGTCTAGCCTGCCGCGGCGGTTTGCAAAGGTGCAGAACCTGGGC GTGAATGATGTGTATAGTTGGACGTTGGCGGTGTTTACCGGGCAAGACGAATTGCAGCAAGATACAAGTCGAGAC GAGAAACAAGAGGCAGCACAAGACGACAAGGACGACTTTTTTGCCGACGTCAAGCTCAACCTCATCTTTCCCTGC ACGCCGGCGCACGTGGCAAAGTACTCCAAGCAGGCGGTGCGCCTCGTCGTCGAGTCGCCGCAGACATATCACGAT GCCGTCAGGCCCTACATGCAGCGCAAGCGCCAACACGGCCAACTCAACTGGGTCTACAACATTATCGACGGCAAG ACCGAGGTGGAAGACGTCATTTACAGGACGCCGCGCGGCCAGTCCGGCGACGAGGGCTTCTTGCTGGCGCCCGAC CTCAACTGGGACCGCAGCACGCTAGAGGCGCTGCATCTACTGGCGCTGGTGGAGCGGCGCGACATGTGGTCGCTG CGCGATATCAAAAAGAAGCATATTGCCTGGCTTGAGCACATGAGGTCCAAGCTCGTTGCTGCCACCGTGGCAACC TATCCCTCCATCCAGCCCGACCAGCTAAAGCTTTATGTACACTACCAGCCCACCTACTACCACTTCCACATACAC ATTGTCCACGTCGCGCTCGAGGCCGGTGCCACGCAGGCAACCGGCAAGGCCGTGGGGCTGGACAGCATCATTGAG ACGCTCAGGGTCATGGCGGGCAATGACGAGACGGGCATGGACACTCTAACCATGAGCTACACGCTCGGCGAGGCC AGTGAGCTCTGGACGCATGTCTTTGCGCCCCTCAAAGCGACTTTGCAATCTCGTCAATAG |