Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|540
Gene name
LocationContig_1127:1648..2917
Strand-
Gene length (bp)1269
Transcript length (bp)1269
Coding sequence length (bp)1269
Protein length (aa) 423

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein 1.2E-06 143 290

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|F4JCQ3|DG783_ARATH Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana GN=At3g47830 PE=3 SV=1 90 312 4.0E-40
sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1 141 331 8.0E-14
sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2 173 333 1.0E-13
sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2 173 313 1.0E-12
sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2 157 313 5.0E-12
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Swissprot ID Swissprot Description Start End E-value
sp|F4JCQ3|DG783_ARATH Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana GN=At3g47830 PE=3 SV=1 90 312 4.0E-40
sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1 141 331 8.0E-14
sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2 173 333 1.0E-13
sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2 173 313 1.0E-12
sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2 157 313 5.0E-12
sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2 173 333 2.0E-11
sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1434 PE=3 SV=1 140 306 2.0E-10
sp|P0AB83|END3_ECOLI Endonuclease III OS=Escherichia coli (strain K12) GN=nth PE=1 SV=1 134 335 2.0E-07
sp|P0AB84|END3_ECOL6 Endonuclease III OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nth PE=3 SV=1 134 335 2.0E-07
sp|P39788|END3_BACSU Endonuclease III OS=Bacillus subtilis (strain 168) GN=nth PE=3 SV=1 139 334 5.0E-07
sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=nth PE=3 SV=1 142 270 1.0E-06
sp|P46303|UVEN_MICLC Ultraviolet N-glycosylase/AP lyase OS=Micrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230) GN=pdg PE=1 SV=2 139 271 1.0E-06
sp|B9DFZ0|NTH2_ARATH Endonuclease III homolog 2, chloroplastic OS=Arabidopsis thaliana GN=NTH2 PE=2 SV=1 76 307 4.0E-06
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GO

GO Term Description Terminal node
GO:0006284 base-excision repair Yes
GO:0050896 response to stimulus No
GO:0033554 cellular response to stress No
GO:0044238 primary metabolic process No
GO:0008150 biological_process No
GO:0006259 DNA metabolic process No
GO:0006950 response to stress No
GO:0008152 metabolic process No
GO:0009987 cellular process No
GO:0046483 heterocycle metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0006281 DNA repair No
GO:1901360 organic cyclic compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0051716 cellular response to stimulus No
GO:0044237 cellular metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0006974 cellular response to DNA damage stimulus No
GO:0034641 cellular nitrogen compound metabolic process No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2454
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|540 (this protein)
Ophiocordyceps australis map64 (Brazil) OphauB2|6235
Ophiocordyceps camponoti-floridani Ophcf2|03055
Ophiocordyceps camponoti-rufipedis Ophun1|5080
Ophiocordyceps kimflemingae Ophio5|6481
Ophiocordyceps subramaniannii Hirsu2|3525

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|540
MLLPRRSARSHKRQASDSDAQADKTKRVKTDQASASSSPHAPWHQPSPPSPSRKSDQAVASSSPPRHKPTIANDL
RLRKLKSFAAHVQQSPFAGFAHPTPAECVRAHRILAKLHGDRLRPDTVVAPKDAAGCGNSPSVLDALVRTILSQN
TSDVNSSRAKLSMDAEYGGSDCWDAIVAGGQARLQRAIQSGGLSLVKSRAIVNILHQVKERHGQYSLNHLFDASD
HDAMREMLSFKGVGPKTASCVLLFCLRRPSFAVDTHVHRITGLLGWRPVRATRQEAQAHLDARVPPDQKYALHVL
FITHGKTCPECRAGGKRLGNCELQAAFAKGQEADVMHNTVKLEPPGTQVDPVGTPPDQDHGKAGSPVKQEALVKE
ETLVKEENHVTKENHVTKETHFNKGENIQVRAQDEPRRTRSKSKKKK*
Coding >OphauG2|540
ATGCTTCTTCCTAGACGCAGCGCCCGCAGCCACAAGCGCCAGGCCTCCGACTCCGACGCACAGGCCGACAAGACG
AAGCGCGTCAAGACGGACCAAGCGTCGGCCTCGTCGTCTCCCCATGCCCCATGGCACCAACCCTCGCCGCCCTCT
CCCAGTCGCAAGTCGGACCAAGCTGTTGCCTCGTCATCTCCCCCTCGCCACAAGCCAACAATCGCCAATGACCTG
CGACTCCGCAAGCTCAAGTCGTTTGCCGCCCATGTTCAACAGTCCCCCTTTGCCGGCTTTGCCCATCCCACCCCG
GCCGAGTGTGTGCGCGCTCACCGCATTCTAGCCAAGCTGCATGGCGATCGCCTTCGTCCCGACACCGTCGTTGCG
CCAAAGGATGCGGCAGGATGCGGCAACTCGCCCTCGGTGCTCGACGCCCTTGTCCGCACCATTCTCTCCCAGAAC
ACCAGCGACGTGAATAGCTCGCGCGCAAAGCTCAGCATGGACGCCGAGTACGGCGGCAGTGATTGCTGGGATGCC
ATTGTCGCGGGGGGGCAGGCCCGTCTGCAGCGCGCCATTCAGTCGGGCGGCCTCAGCCTGGTCAAGTCGCGCGCC
ATTGTCAATATCCTGCATCAAGTCAAGGAGCGCCATGGACAATATTCTCTCAACCACCTGTTTGATGCTTCCGAC
CACGATGCTATGCGCGAGATGCTCTCCTTCAAGGGCGTCGGCCCAAAGACGGCTAGCTGTGTTTTGCTCTTTTGT
CTGCGCCGCCCCAGTTTTGCTGTCGATACCCACGTCCATCGCATCACTGGCCTGCTGGGCTGGCGGCCCGTGCGT
GCCACCCGCCAAGAAGCCCAGGCCCATCTCGATGCTAGAGTCCCGCCCGACCAAAAGTATGCCCTGCATGTCTTG
TTCATCACCCACGGCAAGACGTGTCCCGAGTGCAGAGCCGGCGGCAAGAGGCTGGGCAATTGTGAGCTACAAGCC
GCCTTTGCCAAGGGCCAAGAGGCCGACGTGATGCACAATACCGTCAAGCTGGAACCTCCAGGCACGCAAGTCGAC
CCTGTGGGTACCCCTCCAGATCAAGACCATGGCAAGGCGGGAAGCCCTGTCAAACAGGAGGCCCTTGTCAAAGAG
GAGACTCTTGTCAAAGAGGAAAACCACGTCACCAAGGAAAACCACGTCACCAAGGAAACCCACTTCAACAAAGGG
GAAAATATACAAGTGAGAGCCCAAGACGAACCGAGGCGCACCAGGAGTAAAAGCAAGAAGAAAAAGTAG
Transcript >OphauG2|540
ATGCTTCTTCCTAGACGCAGCGCCCGCAGCCACAAGCGCCAGGCCTCCGACTCCGACGCACAGGCCGACAAGACG
AAGCGCGTCAAGACGGACCAAGCGTCGGCCTCGTCGTCTCCCCATGCCCCATGGCACCAACCCTCGCCGCCCTCT
CCCAGTCGCAAGTCGGACCAAGCTGTTGCCTCGTCATCTCCCCCTCGCCACAAGCCAACAATCGCCAATGACCTG
CGACTCCGCAAGCTCAAGTCGTTTGCCGCCCATGTTCAACAGTCCCCCTTTGCCGGCTTTGCCCATCCCACCCCG
GCCGAGTGTGTGCGCGCTCACCGCATTCTAGCCAAGCTGCATGGCGATCGCCTTCGTCCCGACACCGTCGTTGCG
CCAAAGGATGCGGCAGGATGCGGCAACTCGCCCTCGGTGCTCGACGCCCTTGTCCGCACCATTCTCTCCCAGAAC
ACCAGCGACGTGAATAGCTCGCGCGCAAAGCTCAGCATGGACGCCGAGTACGGCGGCAGTGATTGCTGGGATGCC
ATTGTCGCGGGGGGGCAGGCCCGTCTGCAGCGCGCCATTCAGTCGGGCGGCCTCAGCCTGGTCAAGTCGCGCGCC
ATTGTCAATATCCTGCATCAAGTCAAGGAGCGCCATGGACAATATTCTCTCAACCACCTGTTTGATGCTTCCGAC
CACGATGCTATGCGCGAGATGCTCTCCTTCAAGGGCGTCGGCCCAAAGACGGCTAGCTGTGTTTTGCTCTTTTGT
CTGCGCCGCCCCAGTTTTGCTGTCGATACCCACGTCCATCGCATCACTGGCCTGCTGGGCTGGCGGCCCGTGCGT
GCCACCCGCCAAGAAGCCCAGGCCCATCTCGATGCTAGAGTCCCGCCCGACCAAAAGTATGCCCTGCATGTCTTG
TTCATCACCCACGGCAAGACGTGTCCCGAGTGCAGAGCCGGCGGCAAGAGGCTGGGCAATTGTGAGCTACAAGCC
GCCTTTGCCAAGGGCCAAGAGGCCGACGTGATGCACAATACCGTCAAGCTGGAACCTCCAGGCACGCAAGTCGAC
CCTGTGGGTACCCCTCCAGATCAAGACCATGGCAAGGCGGGAAGCCCTGTCAAACAGGAGGCCCTTGTCAAAGAG
GAGACTCTTGTCAAAGAGGAAAACCACGTCACCAAGGAAAACCACGTCACCAAGGAAACCCACTTCAACAAAGGG
GAAAATATACAAGTGAGAGCCCAAGACGAACCGAGGCGCACCAGGAGTAAAAGCAAGAAGAAAAAGTAG
Gene >OphauG2|540
ATGCTTCTTCCTAGACGCAGCGCCCGCAGCCACAAGCGCCAGGCCTCCGACTCCGACGCACAGGCCGACAAGACG
AAGCGCGTCAAGACGGACCAAGCGTCGGCCTCGTCGTCTCCCCATGCCCCATGGCACCAACCCTCGCCGCCCTCT
CCCAGTCGCAAGTCGGACCAAGCTGTTGCCTCGTCATCTCCCCCTCGCCACAAGCCAACAATCGCCAATGACCTG
CGACTCCGCAAGCTCAAGTCGTTTGCCGCCCATGTTCAACAGTCCCCCTTTGCCGGCTTTGCCCATCCCACCCCG
GCCGAGTGTGTGCGCGCTCACCGCATTCTAGCCAAGCTGCATGGCGATCGCCTTCGTCCCGACACCGTCGTTGCG
CCAAAGGATGCGGCAGGATGCGGCAACTCGCCCTCGGTGCTCGACGCCCTTGTCCGCACCATTCTCTCCCAGAAC
ACCAGCGACGTGAATAGCTCGCGCGCAAAGCTCAGCATGGACGCCGAGTACGGCGGCAGTGATTGCTGGGATGCC
ATTGTCGCGGGGGGGCAGGCCCGTCTGCAGCGCGCCATTCAGTCGGGCGGCCTCAGCCTGGTCAAGTCGCGCGCC
ATTGTCAATATCCTGCATCAAGTCAAGGAGCGCCATGGACAATATTCTCTCAACCACCTGTTTGATGCTTCCGAC
CACGATGCTATGCGCGAGATGCTCTCCTTCAAGGGCGTCGGCCCAAAGACGGCTAGCTGTGTTTTGCTCTTTTGT
CTGCGCCGCCCCAGTTTTGCTGTCGATACCCACGTCCATCGCATCACTGGCCTGCTGGGCTGGCGGCCCGTGCGT
GCCACCCGCCAAGAAGCCCAGGCCCATCTCGATGCTAGAGTCCCGCCCGACCAAAAGTATGCCCTGCATGTCTTG
TTCATCACCCACGGCAAGACGTGTCCCGAGTGCAGAGCCGGCGGCAAGAGGCTGGGCAATTGTGAGCTACAAGCC
GCCTTTGCCAAGGGCCAAGAGGCCGACGTGATGCACAATACCGTCAAGCTGGAACCTCCAGGCACGCAAGTCGAC
CCTGTGGGTACCCCTCCAGATCAAGACCATGGCAAGGCGGGAAGCCCTGTCAAACAGGAGGCCCTTGTCAAAGAG
GAGACTCTTGTCAAAGAGGAAAACCACGTCACCAAGGAAAACCACGTCACCAAGGAAACCCACTTCAACAAAGGG
GAAAATATACAAGTGAGAGCCCAAGACGAACCGAGGCGCACCAGGAGTAAAAGCAAGAAGAAAAAGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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