Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|5390
Gene name
Location	Contig_495:12442..14181
Strand	+
Gene length (bp)	1739
Transcript length (bp)	1587
Coding sequence length (bp)	1587
Protein length (aa)	529

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1.1E-08	31	81

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O14369\|SCE3_SCHPO	Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sce3 PE=1 SV=1	12	152	3.0E-16
sp\|Q04836\|CP31A_ARATH	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1	36	91	2.0E-07
sp\|Q5XI72\|IF4H_RAT	Eukaryotic translation initiation factor 4H OS=Rattus norvegicus GN=Eif4h PE=1 SV=1	30	85	6.0E-07
sp\|Q9WUK2\|IF4H_MOUSE	Eukaryotic translation initiation factor 4H OS=Mus musculus GN=Eif4h PE=1 SV=3	30	85	6.0E-07
sp\|Q1JPH6\|IF4H_BOVIN	Eukaryotic translation initiation factor 4H OS=Bos taurus GN=EIF4H PE=2 SV=1	30	85	6.0E-07

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O14369\|SCE3_SCHPO	Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sce3 PE=1 SV=1	12	152	3.0E-16
sp\|Q04836\|CP31A_ARATH	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1	36	91	2.0E-07
sp\|Q5XI72\|IF4H_RAT	Eukaryotic translation initiation factor 4H OS=Rattus norvegicus GN=Eif4h PE=1 SV=1	30	85	6.0E-07
sp\|Q9WUK2\|IF4H_MOUSE	Eukaryotic translation initiation factor 4H OS=Mus musculus GN=Eif4h PE=1 SV=3	30	85	6.0E-07
sp\|Q1JPH6\|IF4H_BOVIN	Eukaryotic translation initiation factor 4H OS=Bos taurus GN=EIF4H PE=2 SV=1	30	85	6.0E-07
sp\|Q15056\|IF4H_HUMAN	Eukaryotic translation initiation factor 4H OS=Homo sapiens GN=EIF4H PE=1 SV=5	30	85	6.0E-07
sp\|Q5RBR8\|IF4H_PONAB	Eukaryotic translation initiation factor 4H OS=Pongo abelii GN=EIF4H PE=2 SV=1	30	85	7.0E-07

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GO

GO Term	Description	Terminal node
GO:0003723	RNA binding	Yes
GO:0003674	molecular_function	No
GO:1901363	heterocyclic compound binding	No
GO:0005488	binding	No
GO:0003676	nucleic acid binding	No
GO:0097159	organic cyclic compound binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 27	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|5390 MSTWQDRGKQSFLMTIYTLIAKLCSRLLEFFGGSDIVSVRIIEDREMQRPKGFGYVEFGNVEALKKALTLDGQSF QGRVIRIKVADPPRGGDGRGDSNRDLSDWTRKGPLPDIPGRSGRQQSDFGDRRSRDPAAEPRPAREYTWERRGPL SPLAQPEPASRSREGSRARPGPEGLGERGESHRGNRHAAGAWGEGRQEGSRPPRRENPERIVSAADRDLQWRERM RPDAPGKSSPPSRDGSEAPPSPSVPTAAPVPAVRPRLNLAKRTVSEAVEASTPSAGPGEAKASPFGAARPIDTAA KEKEIEEKRLQAIKDKREAEEKAKEEQRLAKQEAAAKAEAEAEKAAKEQAAAKKLAEEKAKAEQQAAAKAAEPEQ QVTNSGPQKPNGALAAEAKVAQRGRDGYEAREPREPKDQVSNYKSRAAEAGNWRSASNEQRLGRGPSGGGRGGRG GGGGGRGSRFDNRGPRSNGSPAHHHHHHHQQQAGQQHSQQAAGQTGGGEAASKQANAPDEEGWTTVPNKKGRQNR ALA*
Coding	>OphauG2\|5390 ATGTCGACTTGGCAGGATCGAGGCAAGCAAAGCTTTCTCATGACTATATACACGCTTATTGCTAAACTGTGCTCT AGGCTACTCGAATTCTTTGGCGGAAGCGACATTGTTAGCGTTCGCATTATTGAAGATCGCGAAATGCAACGTCCC AAGGGCTTTGGTTACGTGGAATTCGGCAACGTCGAAGCACTCAAGAAGGCGCTCACTCTTGATGGCCAGTCCTTC CAGGGTCGAGTCATTAGAATCAAGGTGGCAGATCCTCCCCGTGGTGGAGACGGCCGAGGTGATTCCAATCGAGAC TTGAGCGACTGGACTCGCAAGGGACCTCTGCCAGATATCCCAGGAAGAAGCGGACGCCAACAGTCCGACTTTGGT GACCGTCGCTCTCGGGACCCCGCCGCCGAACCTCGCCCTGCACGCGAATATACATGGGAGCGCCGTGGGCCTCTT TCACCACTGGCGCAACCAGAGCCCGCATCGCGATCTCGAGAGGGCAGCCGTGCACGCCCTGGCCCCGAAGGTCTT GGTGAACGAGGCGAATCCCACCGCGGCAACAGACACGCTGCTGGTGCCTGGGGCGAGGGGCGCCAGGAAGGCTCC CGCCCCCCGCGCCGGGAAAACCCGGAACGTATTGTAAGCGCCGCCGACAGGGATTTGCAATGGAGAGAGCGCATG CGCCCCGATGCGCCTGGCAAGTCGAGCCCTCCGTCTCGCGACGGCAGCGAAGCTCCGCCATCCCCATCTGTTCCA ACAGCTGCCCCAGTGCCTGCTGTGCGTCCCCGACTGAACCTGGCGAAGCGAACGGTATCCGAGGCTGTGGAGGCT TCAACGCCTTCGGCTGGCCCCGGCGAGGCCAAGGCAAGCCCATTTGGCGCAGCTCGCCCCATTGACACGGCTGCC AAGGAGAAGGAGATTGAAGAGAAGAGACTACAGGCAATCAAGGACAAGCGCGAGGCAGAGGAAAAGGCCAAGGAG GAGCAGCGTCTAGCCAAGCAGGAAGCTGCGGCCAAGGCTGAAGCCGAAGCGGAAAAGGCGGCCAAGGAGCAGGCA GCGGCCAAGAAGCTTGCCGAGGAAAAGGCCAAGGCGGAGCAGCAGGCGGCAGCCAAGGCAGCCGAGCCGGAGCAA CAGGTTACAAATTCTGGGCCGCAGAAGCCCAACGGGGCATTGGCGGCTGAAGCCAAGGTGGCACAGCGAGGACGC GACGGCTACGAAGCACGCGAGCCACGGGAGCCCAAAGATCAAGTGAGCAACTACAAGTCGAGAGCAGCTGAAGCA GGCAACTGGAGATCAGCATCCAATGAGCAGCGGCTGGGACGCGGACCATCTGGCGGAGGCAGAGGTGGACGAGGG GGGGGCGGTGGTGGTCGAGGGTCGCGCTTTGACAACCGCGGTCCACGGTCCAACGGGTCGCCTGCACATCATCAC CACCATCATCATCAGCAACAGGCAGGACAGCAGCATTCGCAGCAGGCTGCGGGACAAACAGGTGGTGGCGAGGCA GCAAGCAAGCAGGCGAATGCGCCTGATGAGGAAGGATGGACTACGGTTCCAAACAAGAAGGGACGACAGAACCGC GCGTTGGCATAG
Transcript	>OphauG2\|5390 ATGTCGACTTGGCAGGATCGAGGCAAGCAAAGCTTTCTCATGACTATATACACGCTTATTGCTAAACTGTGCTCT AGGCTACTCGAATTCTTTGGCGGAAGCGACATTGTTAGCGTTCGCATTATTGAAGATCGCGAAATGCAACGTCCC AAGGGCTTTGGTTACGTGGAATTCGGCAACGTCGAAGCACTCAAGAAGGCGCTCACTCTTGATGGCCAGTCCTTC CAGGGTCGAGTCATTAGAATCAAGGTGGCAGATCCTCCCCGTGGTGGAGACGGCCGAGGTGATTCCAATCGAGAC TTGAGCGACTGGACTCGCAAGGGACCTCTGCCAGATATCCCAGGAAGAAGCGGACGCCAACAGTCCGACTTTGGT GACCGTCGCTCTCGGGACCCCGCCGCCGAACCTCGCCCTGCACGCGAATATACATGGGAGCGCCGTGGGCCTCTT TCACCACTGGCGCAACCAGAGCCCGCATCGCGATCTCGAGAGGGCAGCCGTGCACGCCCTGGCCCCGAAGGTCTT GGTGAACGAGGCGAATCCCACCGCGGCAACAGACACGCTGCTGGTGCCTGGGGCGAGGGGCGCCAGGAAGGCTCC CGCCCCCCGCGCCGGGAAAACCCGGAACGTATTGTAAGCGCCGCCGACAGGGATTTGCAATGGAGAGAGCGCATG CGCCCCGATGCGCCTGGCAAGTCGAGCCCTCCGTCTCGCGACGGCAGCGAAGCTCCGCCATCCCCATCTGTTCCA ACAGCTGCCCCAGTGCCTGCTGTGCGTCCCCGACTGAACCTGGCGAAGCGAACGGTATCCGAGGCTGTGGAGGCT TCAACGCCTTCGGCTGGCCCCGGCGAGGCCAAGGCAAGCCCATTTGGCGCAGCTCGCCCCATTGACACGGCTGCC AAGGAGAAGGAGATTGAAGAGAAGAGACTACAGGCAATCAAGGACAAGCGCGAGGCAGAGGAAAAGGCCAAGGAG GAGCAGCGTCTAGCCAAGCAGGAAGCTGCGGCCAAGGCTGAAGCCGAAGCGGAAAAGGCGGCCAAGGAGCAGGCA GCGGCCAAGAAGCTTGCCGAGGAAAAGGCCAAGGCGGAGCAGCAGGCGGCAGCCAAGGCAGCCGAGCCGGAGCAA CAGGTTACAAATTCTGGGCCGCAGAAGCCCAACGGGGCATTGGCGGCTGAAGCCAAGGTGGCACAGCGAGGACGC GACGGCTACGAAGCACGCGAGCCACGGGAGCCCAAAGATCAAGTGAGCAACTACAAGTCGAGAGCAGCTGAAGCA GGCAACTGGAGATCAGCATCCAATGAGCAGCGGCTGGGACGCGGACCATCTGGCGGAGGCAGAGGTGGACGAGGG GGGGGCGGTGGTGGTCGAGGGTCGCGCTTTGACAACCGCGGTCCACGGTCCAACGGGTCGCCTGCACATCATCAC CACCATCATCATCAGCAACAGGCAGGACAGCAGCATTCGCAGCAGGCTGCGGGACAAACAGGTGGTGGCGAGGCA GCAAGCAAGCAGGCGAATGCGCCTGATGAGGAAGGATGGACTACGGTTCCAAACAAGAAGGGACGACAGAACCGC GCGTTGGCATAG
Gene	>OphauG2\|5390 ATGTCGACTTGGCAGGATCGAGGCAAGCAAAGCTTTCTCATGACTATATACACGCTTATTGCTAAACTGTGCTCT AGGCTACTCGGTTCGCGAGGAGGCGCCCCAGCGGTTGCCCGACAAGCCACCCTACACGGCTCATTTGGGCAATCT GTCGTATGACGCAACTTCGGAATCCGTAACAGAATTCTTTGGCGGAAGCGACATTGTTAGCGTTCGCATTATTGA AGATCGCGAAATGCAACGTCCCAAGGGCTTTGGTTACGTGGAATTCGGCAACGTCGAAGCACTCAAGAAGGCGCT CACTCTTGATGGCCAGTCCTTCCAGGGTCGAGTCATTAGAATCAAGGTGGCAGATCCTCGTACGTTGTTTCCCAG TCCAACTTGTTCAATATGCGCTTATTCCTGTCATTCTAGCCCGTGGTGGAGACGGCCGAGGTGATTCCAATCGAG ACTTGAGCGACTGGACTCGCAAGGGACCTCTGCCAGATATCCCAGGAAGAAGCGGACGCCAACAGTCCGACTTTG GTGACCGTCGCTCTCGGGACCCCGCCGCCGAACCTCGCCCTGCACGCGAATATACATGGGAGCGCCGTGGGCCTC TTTCACCACTGGCGCAACCAGAGCCCGCATCGCGATCTCGAGAGGGCAGCCGTGCACGCCCTGGCCCCGAAGGTC TTGGTGAACGAGGCGAATCCCACCGCGGCAACAGACACGCTGCTGGTGCCTGGGGCGAGGGGCGCCAGGAAGGCT CCCGCCCCCCGCGCCGGGAAAACCCGGAACGTATTGTAAGCGCCGCCGACAGGGATTTGCAATGGAGAGAGCGCA TGCGCCCCGATGCGCCTGGCAAGTCGAGCCCTCCGTCTCGCGACGGCAGCGAAGCTCCGCCATCCCCATCTGTTC CAACAGCTGCCCCAGTGCCTGCTGTGCGTCCCCGACTGAACCTGGCGAAGCGAACGGTATCCGAGGCTGTGGAGG CTTCAACGCCTTCGGCTGGCCCCGGCGAGGCCAAGGCAAGCCCATTTGGCGCAGCTCGCCCCATTGACACGGCTG CCAAGGAGAAGGAGATTGAAGAGAAGAGACTACAGGCAATCAAGGACAAGCGCGAGGCAGAGGAAAAGGCCAAGG AGGAGCAGCGTCTAGCCAAGCAGGAAGCTGCGGCCAAGGCTGAAGCCGAAGCGGAAAAGGCGGCCAAGGAGCAGG CAGCGGCCAAGAAGCTTGCCGAGGAAAAGGCCAAGGCGGAGCAGCAGGCGGCAGCCAAGGCAGCCGAGCCGGAGC AACAGGTTACAAATTCTGGGCCGCAGAAGCCCAACGGGGCATTGGCGGCTGAAGCCAAGGTGGCACAGCGAGGAC GCGACGGCTACGAAGCACGCGAGCCACGGGAGCCCAAAGATCAAGTGAGCAACTACAAGTCGAGAGCAGCTGAAG CAGGCAACTGGAGATCAGCATCCAATGAGCAGCGGCTGGGACGCGGACCATCTGGCGGAGGCAGAGGTGGACGAG GGGGGGGCGGTGGTGGTCGAGGGTCGCGCTTTGACAACCGCGGTCCACGGTCCAACGGGTCGCCTGCACATCATC ACCACCATCATCATCAGCAACAGGCAGGACAGCAGCATTCGCAGCAGGCTGCGGGACAAACAGGTGGTGGCGAGG CAGCAAGCAAGCAGGCGAATGCGCCTGATGAGGAAGGATGGACTACGGTTCCAAACAAGAAGGGACGACAGAACC GCGCGTTGGCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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