© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|5336 |
| Gene name | |
| Location | Contig_487:4990..5566 |
| Strand | + |
| Gene length (bp) | 576 |
| Transcript length (bp) | 489 |
| Coding sequence length (bp) | 489 |
| Protein length (aa) | 163 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12597 | Cox20 | Cytochrome c oxidase assembly protein COX20 | 1.8E-34 | 38 | 135 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04935|COX20_YEAST | Cytochrome c oxidase protein 20, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX20 PE=1 SV=1 | 20 | 162 | 2.0E-14 |
| sp|Q75D23|COX20_ASHGO | Cytochrome c oxidase protein 20, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=COX20 PE=3 SV=1 | 20 | 162 | 2.0E-14 |
| sp|G2TRP9|COX20_SCHPO | Cytochrome c oxidase protein 20, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox20 PE=3 SV=1 | 37 | 129 | 1.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0033617 | mitochondrial cytochrome c oxidase assembly | Yes |
| GO:0005743 | mitochondrial inner membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0033108 | mitochondrial respiratory chain complex assembly | No |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:0031966 | mitochondrial membrane | No |
| GO:0016020 | membrane | No |
| GO:0031090 | organelle membrane | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0022607 | cellular component assembly | No |
| GO:0008150 | biological_process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0008535 | respiratory chain complex IV assembly | No |
| GO:0016043 | cellular component organization | No |
| GO:0017004 | cytochrome complex assembly | No |
| GO:0019866 | organelle inner membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 63 | 82 | 19 |
| 2 | 92 | 110 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5336 MASDTKDNSKTLHAWSKPSDTGPEGQAQSASGSQHARPSLSEAIGTIHAQDFANIPNLPCARNGLLVGIASGFLS GSLYFVTRGKVAKATNWAVGMFLVGSTASYEYCHYQRRAERTRMKRHIEIVAEKRREVARQAAEEEREKKRLEQE HKAVQKPWYKVW* |
| Coding | >OphauG2|5336 ATGGCTTCCGACACAAAAGACAACAGCAAGACTTTGCACGCATGGTCCAAACCCAGTGACACAGGGCCCGAAGGC CAAGCTCAATCCGCCTCGGGCTCCCAGCATGCCAGACCAAGCCTCTCCGAGGCCATTGGCACCATCCATGCCCAA GACTTTGCAAATATCCCCAACTTGCCCTGTGCCCGCAACGGCCTCCTTGTAGGCATTGCTTCGGGCTTCCTCTCG GGCAGTCTCTACTTTGTCACGCGCGGCAAAGTAGCAAAGGCCACCAACTGGGCAGTAGGCATGTTCCTTGTTGGC AGCACGGCTTCTTACGAATATTGCCATTACCAAAGACGCGCCGAGCGCACCCGCATGAAGCGTCACATTGAAATC GTCGCAGAGAAGCGCAGAGAAGTCGCTCGCCAGGCGGCCGAGGAAGAGCGGGAGAAGAAGCGTCTCGAGCAAGAG CACAAAGCTGTCCAGAAGCCTTGGTACAAGGTGTGGTAG |
| Transcript | >OphauG2|5336 ATGGCTTCCGACACAAAAGACAACAGCAAGACTTTGCACGCATGGTCCAAACCCAGTGACACAGGGCCCGAAGGC CAAGCTCAATCCGCCTCGGGCTCCCAGCATGCCAGACCAAGCCTCTCCGAGGCCATTGGCACCATCCATGCCCAA GACTTTGCAAATATCCCCAACTTGCCCTGTGCCCGCAACGGCCTCCTTGTAGGCATTGCTTCGGGCTTCCTCTCG GGCAGTCTCTACTTTGTCACGCGCGGCAAAGTAGCAAAGGCCACCAACTGGGCAGTAGGCATGTTCCTTGTTGGC AGCACGGCTTCTTACGAATATTGCCATTACCAAAGACGCGCCGAGCGCACCCGCATGAAGCGTCACATTGAAATC GTCGCAGAGAAGCGCAGAGAAGTCGCTCGCCAGGCGGCCGAGGAAGAGCGGGAGAAGAAGCGTCTCGAGCAAGAG CACAAAGCTGTCCAGAAGCCTTGGTACAAGGTGTGGTAG |
| Gene | >OphauG2|5336 ATGGCTTCCGACACAAAAGACAACAGCAAGACTTTGCACGCATGGTCCAAACCCAGTGACACAGGGCCCGAAGGC CAAGCTCAATCCGCCTCGGGCTCCCAGCATGCCAGACCAAGCCTCTCCGAGGCCATTGGCACCATCCATGCCCAA GACTTTGCAAATATCCCCAACTTGCCCTGTGCCCGCAACGGCCTCCTTGTAGGCATTGCTTCGGGCTTCCTCTCG GGCAGTCTCTACTTTGTCACGCGCGGTTGGTTGCCATCCCTGCCAGGCCCCCCGTAGCAGACAAGAGCTTCATCT CTCTGAGCCATGGCCAGCTGATGCTGTCGACCTGTAGGCAAAGTAGCAAAGGCCACCAACTGGGCAGTAGGCATG TTCCTTGTTGGCAGCACGGCTTCTTACGAATATTGCCATTACCAAAGACGCGCCGAGCGCACCCGCATGAAGCGT CACATTGAAATCGTCGCAGAGAAGCGCAGAGAAGTCGCTCGCCAGGCGGCCGAGGAAGAGCGGGAGAAGAAGCGT CTCGAGCAAGAGCACAAAGCTGTCCAGAAGCCTTGGTACAAGGTGTGGTAG |