© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|5314 |
| Gene name | |
| Location | Contig_483:8238..9359 |
| Strand | - |
| Gene length (bp) | 1121 |
| Transcript length (bp) | 1053 |
| Coding sequence length (bp) | 1053 |
| Protein length (aa) | 351 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00134 | Cyclin_N | Cyclin, N-terminal domain | 2.5E-11 | 35 | 154 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74627|CG1C_SCHPO | Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pch1 PE=1 SV=1 | 2 | 211 | 2.0E-57 |
| sp|Q9FKE6|CCT15_ARATH | Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2 | 3 | 252 | 5.0E-27 |
| sp|Q2QQS5|CCT14_ORYSJ | Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 | 13 | 260 | 2.0E-26 |
| sp|Q2RAC5|CCT13_ORYSJ | Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 | 13 | 285 | 3.0E-25 |
| sp|O88874|CCNK_MOUSE | Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=3 | 13 | 264 | 5.0E-25 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74627|CG1C_SCHPO | Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pch1 PE=1 SV=1 | 2 | 211 | 2.0E-57 |
| sp|Q9FKE6|CCT15_ARATH | Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2 | 3 | 252 | 5.0E-27 |
| sp|Q2QQS5|CCT14_ORYSJ | Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 | 13 | 260 | 2.0E-26 |
| sp|Q2RAC5|CCT13_ORYSJ | Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 | 13 | 285 | 3.0E-25 |
| sp|O88874|CCNK_MOUSE | Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=3 | 13 | 264 | 5.0E-25 |
| sp|Q8GYM6|CCT14_ARATH | Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 | 12 | 299 | 1.0E-24 |
| sp|O75909|CCNK_HUMAN | Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2 | 13 | 261 | 2.0E-24 |
| sp|Q9JJA7|CCNL2_MOUSE | Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1 | 10 | 339 | 3.0E-23 |
| sp|Q6Z7H3|CCT12_ORYSJ | Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2 | 13 | 265 | 3.0E-23 |
| sp|Q7ZVX0|CCNL1_DANRE | Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1 | 6 | 212 | 2.0E-22 |
| sp|Q5I0H5|CCNL2_RAT | Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=1 SV=2 | 10 | 339 | 2.0E-22 |
| sp|Q6GN15|CCNL1_XENLA | Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2 | 10 | 212 | 2.0E-22 |
| sp|Q5BKF8|CCNL2_XENTR | Cyclin-L2 OS=Xenopus tropicalis GN=ccnl2 PE=2 SV=1 | 23 | 212 | 2.0E-21 |
| sp|Q52KE7|CCNL1_MOUSE | Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=1 SV=1 | 10 | 212 | 3.0E-21 |
| sp|Q9R1Q2|CCNL1_RAT | Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1 | 10 | 212 | 4.0E-21 |
| sp|Q9UK58|CCNL1_HUMAN | Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1 | 10 | 212 | 4.0E-21 |
| sp|Q5ZJP9|CCNL1_CHICK | Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1 | 17 | 212 | 1.0E-20 |
| sp|Q8RWV3|CCL11_ARATH | Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=1 SV=2 | 11 | 350 | 4.0E-20 |
| sp|O60583|CCNT2_HUMAN | Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2 | 10 | 232 | 5.0E-20 |
| sp|Q0E474|CCT11_ORYSJ | Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2 | 13 | 253 | 6.0E-20 |
| sp|Q9AS36|CCL11_ORYSJ | Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1 | 11 | 250 | 6.0E-20 |
| sp|Q6T8E9|CCNT1_BOVIN | Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1 | 12 | 233 | 6.0E-20 |
| sp|Q9XT26|CCNT1_HORSE | Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1 | 12 | 233 | 6.0E-20 |
| sp|Q9QWV9|CCNT1_MOUSE | Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3 | 12 | 233 | 2.0E-19 |
| sp|Q96S94|CCNL2_HUMAN | Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1 | 10 | 212 | 2.0E-19 |
| sp|O60563|CCNT1_HUMAN | Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1 | 12 | 233 | 4.0E-19 |
| sp|Q8HXN7|CCNT1_PANTR | Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1 | 12 | 233 | 5.0E-19 |
| sp|Q8LBC0|CCT13_ARATH | Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2 | 5 | 228 | 2.0E-16 |
| sp|Q56YF8|CCT12_ARATH | Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2 | 13 | 196 | 3.0E-16 |
| sp|Q8N1B3|FA58A_HUMAN | Cyclin-related protein FAM58A OS=Homo sapiens GN=FAM58A PE=1 SV=2 | 32 | 237 | 9.0E-16 |
| sp|Q6NRK9|FA58A_XENLA | Cyclin-related protein FAM58A OS=Xenopus laevis GN=fam58a PE=2 SV=2 | 29 | 234 | 4.0E-15 |
| sp|Q9C8P7|CCT11_ARATH | Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1 | 10 | 229 | 8.0E-15 |
| sp|Q8QZR8|FA58B_MOUSE | Cyclin-related protein FAM58B OS=Mus musculus GN=Fam58b PE=2 SV=2 | 32 | 237 | 3.0E-14 |
| sp|Q4QQW5|FA58A_RAT | Cyclin-related protein FAM58A OS=Rattus norvegicus GN=Fam58a PE=2 SV=1 | 45 | 237 | 2.0E-13 |
| sp|Q5RD50|CCNL1_PONAB | Cyclin-L1 OS=Pongo abelii GN=CCNL1 PE=3 SV=1 | 10 | 110 | 1.0E-11 |
| sp|Q503D6|FA58A_DANRE | Cyclin-related protein FAM58A OS=Danio rerio GN=fam58a PE=2 SV=1 | 45 | 184 | 2.0E-11 |
| sp|O96433|CCNT_DROME | Cyclin-T OS=Drosophila melanogaster GN=CycT PE=1 SV=2 | 13 | 251 | 2.0E-10 |
| sp|P24863|CCNC_HUMAN | Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2 | 44 | 251 | 1.0E-09 |
| sp|P39947|CCNC_RAT | Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2 | 44 | 251 | 2.0E-09 |
| sp|Q3ZCK5|CCNC_BOVIN | Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1 | 44 | 251 | 2.0E-09 |
| sp|Q9FJK6|CCC11_ARATH | Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2 | 29 | 249 | 2.0E-09 |
| sp|P55168|CCNC_CHICK | Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1 | 44 | 251 | 3.0E-09 |
| sp|Q7QB13|CCNC_ANOGA | Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2 | 44 | 237 | 3.0E-09 |
| sp|O59748|CTK2_SCHPO | CTD kinase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsc1 PE=1 SV=2 | 26 | 211 | 4.0E-09 |
| sp|Q16JA2|CCNC_AEDAE | Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1 | 44 | 237 | 6.0E-09 |
| sp|P25008|CCNC_DROME | Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1 | 28 | 249 | 6.0E-09 |
| sp|P93411|CCC11_ORYSJ | Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1 | 29 | 219 | 7.0E-09 |
| sp|Q62447|CCNC_MOUSE | Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=4 | 44 | 251 | 7.0E-09 |
| sp|Q29AI1|CCNC_DROPS | Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3 SV=1 | 44 | 249 | 8.0E-09 |
| sp|Q4KLA0|CCNC_XENLA | Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1 | 44 | 251 | 9.0E-09 |
| sp|Q28F72|CCNC_XENTR | Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1 | 44 | 251 | 1.0E-08 |
| sp|P0C7Q3|FA58B_HUMAN | Putative cyclin-related protein FAM58B OS=Homo sapiens GN=FAM58BP PE=5 SV=1 | 45 | 237 | 2.0E-08 |
| sp|Q9FJK7|CCC12_ARATH | Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1 | 29 | 254 | 5.0E-08 |
| sp|Q6CK68|BUR2_KLULA | Protein BUR2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=BUR2 PE=3 SV=1 | 9 | 207 | 2.0E-07 |
| sp|P51947|CCNH_XENLA | Cyclin-H OS=Xenopus laevis GN=ccnh PE=1 SV=1 | 55 | 209 | 2.0E-07 |
| sp|Q3ZBL9|CCNH_BOVIN | Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1 | 55 | 277 | 5.0E-07 |
| sp|A4RD79|SSN8_MAGO7 | RNA polymerase II holoenzyme cyclin-like subunit OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SSN8 PE=3 SV=1 | 53 | 213 | 8.0E-07 |
| sp|O94612|YFO5_SCHPO | Uncharacterized cyclin-L1-like protein C1296.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1296.05c PE=3 SV=1 | 42 | 261 | 2.0E-06 |
| sp|Q5A4H9|SSN8_CANAL | RNA polymerase II holoenzyme cyclin-like subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SSN8 PE=3 SV=1 | 44 | 213 | 4.0E-06 |
| sp|Q2UDB2|SSN8_ASPOR | RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=ssn8 PE=3 SV=2 | 46 | 218 | 5.0E-06 |
| sp|Q0CV29|SSN8_ASPTN | RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ssn8 PE=3 SV=1 | 57 | 218 | 6.0E-06 |
| sp|Q61458|CCNH_MOUSE | Cyclin-H OS=Mus musculus GN=Ccnh PE=1 SV=2 | 55 | 209 | 1.0E-05 |
| sp|Q4R7U4|CCNH_MACFA | Cyclin-H OS=Macaca fascicularis GN=CCNH PE=2 SV=1 | 55 | 209 | 1.0E-05 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 45 | 67 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5314 MEAHESPPPTNQWSFTPDEVLSTPTIIDGLAPSEERLRRAKGVNFIYQAGVMLDLPQITLWVAAVFFHRFYMRYS MVQEKGGIHHYNIAATALFLANKVEENCRKTKDIIIAVAKVAQKNPKLIIDEQSKEYWRWRDSILTYEEVMLEQL CFDLMIDNPYRQLFDLLEALDMIHNKHLRKIAWAFCNDACLTALPLLIEARDVAISSIFFASVHTNQQVDDVNGE AWWRFLNGDADRCTRAIEVMRQFYTENPLRKQNPSLPSPAFDLENTRRRAETLSSTGGTPRDADRASRSPAVRLN GGAEGAGDARDASGDPATRSPKRNIVPSPEESRSEKRAKLSEDKVEPVEG* |
| Coding | >OphauG2|5314 ATGGAGGCACACGAATCCCCGCCTCCCACTAACCAGTGGTCCTTTACCCCAGACGAGGTTCTCAGCACTCCCACA ATTATCGATGGCCTTGCTCCGTCGGAAGAACGACTTCGGAGAGCAAAGGGCGTCAACTTTATTTACCAGGCCGGC GTCATGCTCGACCTGCCCCAAATCACGCTTTGGGTTGCCGCCGTATTTTTCCATCGCTTTTACATGCGCTACAGC ATGGTTCAGGAAAAGGGAGGCATACACCACTATAACATAGCTGCCACGGCGCTGTTCCTCGCAAACAAGGTGGAA GAAAACTGCAGAAAGACAAAAGATATCATCATTGCCGTTGCAAAAGTCGCCCAGAAAAACCCAAAACTCATCATT GATGAGCAGAGCAAGGAGTACTGGCGATGGAGGGACAGCATCCTCACATATGAGGAAGTCATGCTCGAGCAACTC TGCTTTGACCTCATGATTGACAATCCCTATCGACAGCTCTTTGACCTTCTCGAGGCGCTTGACATGATTCACAAC AAACACCTGAGAAAGATAGCCTGGGCATTCTGTAACGATGCATGCCTTACGGCACTGCCTCTTCTCATTGAGGCC CGAGACGTGGCCATTAGTTCCATCTTCTTTGCCAGCGTGCACACCAACCAACAAGTCGACGACGTCAACGGTGAA GCCTGGTGGAGGTTTCTCAATGGCGATGCAGACCGCTGCACACGCGCCATTGAAGTCATGAGGCAGTTTTATACG GAGAACCCCCTCAGAAAACAGAACCCGTCGCTGCCTTCGCCCGCCTTTGACCTGGAAAACACAAGACGCCGAGCA GAGACGCTATCGTCGACAGGCGGCACACCCAGAGACGCCGATCGCGCCAGTCGCAGCCCCGCCGTCCGCCTCAAT GGCGGCGCCGAGGGAGCAGGAGACGCCAGAGACGCCAGCGGTGACCCGGCAACAAGATCTCCAAAAAGAAACATT GTGCCCAGCCCTGAAGAGTCGAGATCAGAGAAGCGCGCCAAGCTGTCCGAGGACAAGGTGGAGCCTGTCGAGGGC TAG |
| Transcript | >OphauG2|5314 ATGGAGGCACACGAATCCCCGCCTCCCACTAACCAGTGGTCCTTTACCCCAGACGAGGTTCTCAGCACTCCCACA ATTATCGATGGCCTTGCTCCGTCGGAAGAACGACTTCGGAGAGCAAAGGGCGTCAACTTTATTTACCAGGCCGGC GTCATGCTCGACCTGCCCCAAATCACGCTTTGGGTTGCCGCCGTATTTTTCCATCGCTTTTACATGCGCTACAGC ATGGTTCAGGAAAAGGGAGGCATACACCACTATAACATAGCTGCCACGGCGCTGTTCCTCGCAAACAAGGTGGAA GAAAACTGCAGAAAGACAAAAGATATCATCATTGCCGTTGCAAAAGTCGCCCAGAAAAACCCAAAACTCATCATT GATGAGCAGAGCAAGGAGTACTGGCGATGGAGGGACAGCATCCTCACATATGAGGAAGTCATGCTCGAGCAACTC TGCTTTGACCTCATGATTGACAATCCCTATCGACAGCTCTTTGACCTTCTCGAGGCGCTTGACATGATTCACAAC AAACACCTGAGAAAGATAGCCTGGGCATTCTGTAACGATGCATGCCTTACGGCACTGCCTCTTCTCATTGAGGCC CGAGACGTGGCCATTAGTTCCATCTTCTTTGCCAGCGTGCACACCAACCAACAAGTCGACGACGTCAACGGTGAA GCCTGGTGGAGGTTTCTCAATGGCGATGCAGACCGCTGCACACGCGCCATTGAAGTCATGAGGCAGTTTTATACG GAGAACCCCCTCAGAAAACAGAACCCGTCGCTGCCTTCGCCCGCCTTTGACCTGGAAAACACAAGACGCCGAGCA GAGACGCTATCGTCGACAGGCGGCACACCCAGAGACGCCGATCGCGCCAGTCGCAGCCCCGCCGTCCGCCTCAAT GGCGGCGCCGAGGGAGCAGGAGACGCCAGAGACGCCAGCGGTGACCCGGCAACAAGATCTCCAAAAAGAAACATT GTGCCCAGCCCTGAAGAGTCGAGATCAGAGAAGCGCGCCAAGCTGTCCGAGGACAAGGTGGAGCCTGTCGAGGGC TAG |
| Gene | >OphauG2|5314 ATGGAGGCACACGAATCCCCGCCTCCCACTAACCAGTGGTCCTTTACCCCAGACGAGGTTCTCAGCACTCCCACA ATTATCGATGGCCTTGCTCCGTCGGAAGAACGACTTCGGAGAGCAAAGGGCGTCAACTTTATTTACCAGGCCGGC GTCATGCTCGACCTGCCCCAAATCACGCTTTGGGTTGCCGCCGTATTTTTCCATCGCTTTTACATGCGCTACAGC ATGGTTCAGGAAAAGGGAGGCATACACCACTATGTAGGTCTTTCGTATTTTGGTTTTTTTTCTTGCTTGTTAAAT ACTGCGGTACTAACTGCTGTTGCTAGAACATAGCTGCCACGGCGCTGTTCCTCGCAAACAAGGTGGAAGAAAACT GCAGAAAGACAAAAGATATCATCATTGCCGTTGCAAAAGTCGCCCAGAAAAACCCAAAACTCATCATTGATGAGC AGAGCAAGGAGTACTGGCGATGGAGGGACAGCATCCTCACATATGAGGAAGTCATGCTCGAGCAACTCTGCTTTG ACCTCATGATTGACAATCCCTATCGACAGCTCTTTGACCTTCTCGAGGCGCTTGACATGATTCACAACAAACACC TGAGAAAGATAGCCTGGGCATTCTGTAACGATGCATGCCTTACGGCACTGCCTCTTCTCATTGAGGCCCGAGACG TGGCCATTAGTTCCATCTTCTTTGCCAGCGTGCACACCAACCAACAAGTCGACGACGTCAACGGTGAAGCCTGGT GGAGGTTTCTCAATGGCGATGCAGACCGCTGCACACGCGCCATTGAAGTCATGAGGCAGTTTTATACGGAGAACC CCCTCAGAAAACAGAACCCGTCGCTGCCTTCGCCCGCCTTTGACCTGGAAAACACAAGACGCCGAGCAGAGACGC TATCGTCGACAGGCGGCACACCCAGAGACGCCGATCGCGCCAGTCGCAGCCCCGCCGTCCGCCTCAATGGCGGCG CCGAGGGAGCAGGAGACGCCAGAGACGCCAGCGGTGACCCGGCAACAAGATCTCCAAAAAGAAACATTGTGCCCA GCCCTGAAGAGTCGAGATCAGAGAAGCGCGCCAAGCTGTCCGAGGACAAGGTGGAGCCTGTCGAGGGCTAG |