Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|5254
Gene name
Location	Contig_475:7497..8152
Strand	-
Gene length (bp)	655
Transcript length (bp)	501
Coding sequence length (bp)	501
Protein length (aa)	167

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF18126	Mitoc_mL59	Mitochondrial ribosomal protein mL59	5.2E-40	22	154

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P23369\|RM25_YEAST	54S ribosomal protein L25, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL25 PE=1 SV=2	11	149	2.0E-13

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 38	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|5254 MTPAVLKPPSSYLELAKKLPPPLLRFLARWPPASIHANPDKPILTSYQQQRPDPFRPFKHPATGCWHDAVYSRRK QADLMRLAQKHGVAELMPVSQKDPERRLAKRVEFGLRVKGTGVGQQVKGHAHERTMIARHEKRRKAMLAMPKLIK QFKKVGKRRWKKFPKL*
Coding	>OphauG2\|5254 ATGACGCCCGCCGTGCTGAAACCGCCCTCGTCCTACTTGGAGCTCGCCAAAAAACTCCCCCCGCCCCTGCTGCGC TTCCTTGCTCGCTGGCCGCCTGCCTCGATTCATGCCAACCCCGACAAGCCCATCCTCACCTCGTACCAGCAGCAA CGCCCAGATCCTTTTCGCCCCTTCAAGCATCCCGCCACAGGCTGCTGGCATGACGCTGTCTACTCGCGCCGAAAG CAGGCCGACTTGATGCGCTTGGCCCAAAAGCACGGTGTGGCAGAGCTCATGCCTGTGTCCCAAAAGGACCCCGAG CGCCGCCTTGCCAAGCGTGTCGAGTTTGGTTTGCGCGTCAAGGGCACCGGTGTTGGCCAACAAGTCAAGGGCCAT GCTCACGAAAGAACCATGATTGCCAGGCACGAGAAGAGGAGAAAGGCCATGCTGGCCATGCCCAAGCTCATCAAG CAGTTCAAAAAGGTTGGAAAGAGACGGTGGAAGAAATTCCCCAAATTATAG
Transcript	>OphauG2\|5254 ATGACGCCCGCCGTGCTGAAACCGCCCTCGTCCTACTTGGAGCTCGCCAAAAAACTCCCCCCGCCCCTGCTGCGC TTCCTTGCTCGCTGGCCGCCTGCCTCGATTCATGCCAACCCCGACAAGCCCATCCTCACCTCGTACCAGCAGCAA CGCCCAGATCCTTTTCGCCCCTTCAAGCATCCCGCCACAGGCTGCTGGCATGACGCTGTCTACTCGCGCCGAAAG CAGGCCGACTTGATGCGCTTGGCCCAAAAGCACGGTGTGGCAGAGCTCATGCCTGTGTCCCAAAAGGACCCCGAG CGCCGCCTTGCCAAGCGTGTCGAGTTTGGTTTGCGCGTCAAGGGCACCGGTGTTGGCCAACAAGTCAAGGGCCAT GCTCACGAAAGAACCATGATTGCCAGGCACGAGAAGAGGAGAAAGGCCATGCTGGCCATGCCCAAGCTCATCAAG CAGTTCAAAAAGGTTGGAAAGAGACGGTGGAAGAAATTCCCCAAATTATAG
Gene	>OphauG2\|5254 ATGACGCCCGCCGTGCTGAAACCGCCCTCGTCCTACTTGGAGCTCGCCAAAAAACTCCCCCCGCCCCTGCTGCGC TTCCTTGCTCGCTGGCCGCCTGCCTCGATTCATGCCAACCCCGACAAGCCCATCCTCACCTCGTACCAGCAGCAA CGCCCAGATCCTTTTCGCCCCTTCAAGCATCCCGCCACAGGCTGCTGGCATGACGCTGTCTACTCGCGCCGAAAG CAGGCCGACTTGATGCGCTTGGCCCAAAAGCACGGTGTGGCAGAGCTCATGCCTGTGTCCCAAAAGGACCCCGAG CGCCGCCTTGCCAAGCGTGTCGAGTTTGGTTTGCGCGTCAAGGGCACCGGTGTTGGCCAACAAGTCAAGGGCCAT GCTCACGAAAGAACCATGATTGCCAGGTCTGTCCATCTCTTGGCCCTCCTTCATGTGCCGTCTTGATGCCTTGGC CTGACTCTGATTTGTTCCTTGTTCTCGCAGGCACGAGAAGAGGAGAAAGGCCATGCTGGCCATGCCCAAGCTCAT CAAGCAGTTCAAAAAGGTGAGCCAAGCAAGCTCGCTCCCCCCCGACTCTGCTTGGCTTGCCTCGGCTTATGCTAA CTTACTTGGATGCCAGGTTGGAAAGAGACGGTGGAAGAAATTCCCCAAATTATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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