Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|5245
Gene name
LocationContig_473:13225..14554
Strand-
Gene length (bp)1329
Transcript length (bp)1251
Coding sequence length (bp)1251
Protein length (aa) 417

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00566 RabGAP-TBC Rab-GTPase-TBC domain 1.6E-17 109 282

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9D9I4|TBC20_MOUSE TBC1 domain family member 20 OS=Mus musculus GN=Tbc1d20 PE=1 SV=1 5 324 1.0E-36
sp|Q2T9Q1|TBC20_BOVIN TBC1 domain family member 20 OS=Bos taurus GN=TBC1D20 PE=2 SV=1 7 324 1.0E-35
sp|Q96BZ9|TBC20_HUMAN TBC1 domain family member 20 OS=Homo sapiens GN=TBC1D20 PE=1 SV=1 7 324 3.0E-35
sp|O94661|GYP10_SCHPO GTPase-activating protein gyp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp10 PE=3 SV=1 25 364 4.0E-33
sp|P43570|GYP8_YEAST GTPase-activating protein GYP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP8 PE=1 SV=1 113 248 6.0E-13

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 38 0.45

Transmembrane Domains

Domain # Start End Length
1 383 400 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|5245
MDSSNRGSDAFNLDAALWARHKRIEIVSACQSRDVAALSSLAQSRHGLLSDSLRQAACALHQSHPSFTPCRASTD
LGLPRYQLGPILLGLPLPPPLGADAPPPADDWKNLPCHRDEDQVQLDVNRSFVYYPAHQSEAELERCKLDLSSLI
IEVLRRNPYLCYFQGYHDICQVFLLVLGPVRRAEAVSRLSVLRIRDFMLPSLAPTTAQLRLLPDILTKADPELRR
HIASVEPFYALAGTLTMYAHNIERYRDIVRLFDVLLAREPVFTIYLFACIVMDRRDEVLDIDEPDMLQVTLAKVP
ADMDIDGLVVKAVALYDRFPPQSLPSWHQISSASVLKTARDVCDCATQTLQQGRAYFQRQVSELWWLNTRQSILL
VLGRYRRPVRAIGMAFAVAAVAFYLRQNPATMRYLTGLFSK*
Coding >OphauG2|5245
ATGGACTCAAGCAATCGAGGTTCCGACGCATTCAACCTCGATGCTGCCCTGTGGGCCAGGCACAAGCGAATCGAG
ATTGTCAGCGCTTGCCAATCAAGAGATGTTGCTGCTCTAAGCTCTCTCGCTCAATCGCGTCACGGCCTGCTCTCC
GACTCATTACGACAAGCAGCCTGTGCGCTTCACCAATCCCACCCCTCCTTTACACCTTGCCGAGCTTCCACTGAC
CTTGGTCTACCTCGGTACCAATTAGGGCCAATCTTGCTAGGTCTCCCATTACCCCCGCCCTTGGGTGCCGATGCG
CCTCCGCCTGCCGACGACTGGAAAAATCTACCTTGCCACAGGGACGAAGACCAGGTTCAACTCGATGTCAACCGC
TCCTTTGTGTATTATCCTGCCCACCAGTCCGAGGCTGAGCTCGAGCGTTGCAAACTAGACCTATCAAGCCTCATA
ATTGAGGTTTTGCGTCGAAATCCCTATCTCTGCTACTTTCAGGGTTATCATGACATCTGCCAAGTGTTTTTGCTC
GTTCTAGGGCCCGTCAGACGGGCCGAGGCCGTTTCACGACTCTCGGTCCTACGCATACGCGACTTCATGCTGCCC
AGTCTCGCTCCCACCACTGCTCAGCTAAGACTGCTGCCAGATATCCTGACCAAGGCGGACCCTGAGCTGCGGCGG
CACATAGCTTCTGTCGAGCCCTTCTACGCCCTGGCAGGAACCCTAACCATGTACGCCCACAACATCGAGCGTTAT
CGAGACATTGTACGCTTATTCGATGTTTTGCTTGCCCGCGAGCCCGTCTTCACCATCTATCTCTTTGCCTGCATC
GTCATGGACCGCCGTGACGAGGTCCTTGACATCGATGAACCCGACATGCTCCAGGTGACACTGGCCAAAGTCCCC
GCCGACATGGACATAGACGGGCTGGTTGTCAAGGCTGTAGCCCTCTATGATCGCTTTCCCCCGCAATCGCTGCCA
TCTTGGCATCAAATTTCAAGTGCGAGCGTTCTCAAGACGGCTCGAGACGTTTGTGACTGCGCTACCCAGACGCTC
CAGCAAGGTCGCGCCTACTTTCAACGCCAGGTCAGCGAGCTTTGGTGGCTAAATACGCGCCAAAGCATCCTCCTG
GTACTCGGCAGGTATCGAAGACCAGTCAGAGCCATTGGCATGGCCTTCGCTGTTGCCGCCGTTGCCTTCTATCTG
CGACAGAATCCCGCCACCATGCGGTACTTGACAGGCCTCTTTTCAAAATGA
Transcript >OphauG2|5245
ATGGACTCAAGCAATCGAGGTTCCGACGCATTCAACCTCGATGCTGCCCTGTGGGCCAGGCACAAGCGAATCGAG
ATTGTCAGCGCTTGCCAATCAAGAGATGTTGCTGCTCTAAGCTCTCTCGCTCAATCGCGTCACGGCCTGCTCTCC
GACTCATTACGACAAGCAGCCTGTGCGCTTCACCAATCCCACCCCTCCTTTACACCTTGCCGAGCTTCCACTGAC
CTTGGTCTACCTCGGTACCAATTAGGGCCAATCTTGCTAGGTCTCCCATTACCCCCGCCCTTGGGTGCCGATGCG
CCTCCGCCTGCCGACGACTGGAAAAATCTACCTTGCCACAGGGACGAAGACCAGGTTCAACTCGATGTCAACCGC
TCCTTTGTGTATTATCCTGCCCACCAGTCCGAGGCTGAGCTCGAGCGTTGCAAACTAGACCTATCAAGCCTCATA
ATTGAGGTTTTGCGTCGAAATCCCTATCTCTGCTACTTTCAGGGTTATCATGACATCTGCCAAGTGTTTTTGCTC
GTTCTAGGGCCCGTCAGACGGGCCGAGGCCGTTTCACGACTCTCGGTCCTACGCATACGCGACTTCATGCTGCCC
AGTCTCGCTCCCACCACTGCTCAGCTAAGACTGCTGCCAGATATCCTGACCAAGGCGGACCCTGAGCTGCGGCGG
CACATAGCTTCTGTCGAGCCCTTCTACGCCCTGGCAGGAACCCTAACCATGTACGCCCACAACATCGAGCGTTAT
CGAGACATTGTACGCTTATTCGATGTTTTGCTTGCCCGCGAGCCCGTCTTCACCATCTATCTCTTTGCCTGCATC
GTCATGGACCGCCGTGACGAGGTCCTTGACATCGATGAACCCGACATGCTCCAGGTGACACTGGCCAAAGTCCCC
GCCGACATGGACATAGACGGGCTGGTTGTCAAGGCTGTAGCCCTCTATGATCGCTTTCCCCCGCAATCGCTGCCA
TCTTGGCATCAAATTTCAAGTGCGAGCGTTCTCAAGACGGCTCGAGACGTTTGTGACTGCGCTACCCAGACGCTC
CAGCAAGGTCGCGCCTACTTTCAACGCCAGGTCAGCGAGCTTTGGTGGCTAAATACGCGCCAAAGCATCCTCCTG
GTACTCGGCAGGTATCGAAGACCAGTCAGAGCCATTGGCATGGCCTTCGCTGTTGCCGCCGTTGCCTTCTATCTG
CGACAGAATCCCGCCACCATGCGGTACTTGACAGGCCTCTTTTCAAAATGA
Gene >OphauG2|5245
ATGGACTCAAGCAATCGAGGTTCCGACGCATTCAACCTCGATGCTGCCCTGTGGGCCAGGCACAAGCGAATCGAG
ATTGTCAGCGCTTGCCAATCAAGAGATGTTGCTGCTCTAAGCTCTCTCGCTCAATCGCGTCACGGCCTGCTCTCC
GACTCATTACGACAAGCAGCCTGTGCGCTTCACCAATCCCACCCCTCCTTTACACCTTGCCGAGCTTCCACTGAC
CTTGGTCTACCTCGGTACCAATTAGGGCCAATCTTGCTAGGTCTCCCATTACCCCCGCCCTTGGGTGCCGATGCG
CCTCCGCCTGCCGACGACTGGAAAAATCTACCTTGCCACAGGGACGAAGACCAGGTTCAACTCGATGTCAACCGC
TCCTTTGTGTATTATCCTGCCCGTACGCGTCTTCCCAACCTCCTCTAGAAACAACTTGTCGCCGCTGACTTGCCC
TCGCCGTCGTTTTCGACATACCCAGACCAGTCCGAGGCTGAGCTCGAGCGTTGCAAACTAGACCTATCAAGCCTC
ATAATTGAGGTTTTGCGTCGAAATCCCTATCTCTGCTACTTTCAGGGTTATCATGACATCTGCCAAGTGTTTTTG
CTCGTTCTAGGGCCCGTCAGACGGGCCGAGGCCGTTTCACGACTCTCGGTCCTACGCATACGCGACTTCATGCTG
CCCAGTCTCGCTCCCACCACTGCTCAGCTAAGACTGCTGCCAGATATCCTGACCAAGGCGGACCCTGAGCTGCGG
CGGCACATAGCTTCTGTCGAGCCCTTCTACGCCCTGGCAGGAACCCTAACCATGTACGCCCACAACATCGAGCGT
TATCGAGACATTGTACGCTTATTCGATGTTTTGCTTGCCCGCGAGCCCGTCTTCACCATCTATCTCTTTGCCTGC
ATCGTCATGGACCGCCGTGACGAGGTCCTTGACATCGATGAACCCGACATGCTCCAGGTGACACTGGCCAAAGTC
CCCGCCGACATGGACATAGACGGGCTGGTTGTCAAGGCTGTAGCCCTCTATGATCGCTTTCCCCCGCAATCGCTG
CCATCTTGGCATCAAATTTCAAGTGCGAGCGTTCTCAAGACGGCTCGAGACGTTTGTGACTGCGCTACCCAGACG
CTCCAGCAAGGTCGCGCCTACTTTCAACGCCAGGTCAGCGAGCTTTGGTGGCTAAATACGCGCCAAAGCATCCTC
CTGGTACTCGGCAGGTATCGAAGACCAGTCAGAGCCATTGGCATGGCCTTCGCTGTTGCCGCCGTTGCCTTCTAT
CTGCGACAGAATCCCGCCACCATGCGGTACTTGACAGGCCTCTTTTCAAAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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