© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|5164 |
| Gene name | |
| Location | Contig_461:9967..12655 |
| Strand | + |
| Gene length (bp) | 2688 |
| Transcript length (bp) | 2559 |
| Coding sequence length (bp) | 2559 |
| Protein length (aa) | 853 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00924 | MS_channel | Mechanosensitive ion channel | 2.7E-20 | 447 | 587 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74839|YC1B_SCHPO | Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1 | 66 | 657 | 7.0E-89 |
| sp|O14050|YEYH_SCHPO | Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1 | 71 | 670 | 1.0E-82 |
| sp|Q9LYG9|MSL10_ARATH | Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1 | 381 | 652 | 2.0E-24 |
| sp|Q84M97|MSL9_ARATH | Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=1 SV=1 | 395 | 652 | 1.0E-23 |
| sp|F4IME2|MSL8_ARATH | Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2 | 361 | 639 | 3.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74839|YC1B_SCHPO | Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1 | 66 | 657 | 7.0E-89 |
| sp|O14050|YEYH_SCHPO | Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1 | 71 | 670 | 1.0E-82 |
| sp|Q9LYG9|MSL10_ARATH | Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1 | 381 | 652 | 2.0E-24 |
| sp|Q84M97|MSL9_ARATH | Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=1 SV=1 | 395 | 652 | 1.0E-23 |
| sp|F4IME2|MSL8_ARATH | Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2 | 361 | 639 | 3.0E-19 |
| sp|Q9LPG3|MSL4_ARATH | Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1 | 365 | 654 | 7.0E-19 |
| sp|F4IME1|MSL7_ARATH | Mechanosensitive ion channel protein 7 OS=Arabidopsis thaliana GN=MSL7 PE=3 SV=1 | 361 | 639 | 2.0E-18 |
| sp|Q9LH74|MSL5_ARATH | Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1 | 145 | 673 | 2.0E-18 |
| sp|Q9SYM1|MSL6_ARATH | Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1 | 365 | 654 | 2.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 85 | 107 | 22 |
| 2 | 127 | 149 | 22 |
| 3 | 153 | 172 | 19 |
| 4 | 177 | 199 | 22 |
| 5 | 448 | 465 | 17 |
| 6 | 470 | 492 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5164 MSDNGIPLTKVRSNASVTGARKPTPGSVESSLGNEKRSLHNRHAGRRKKHGDLGRTGTGGSDIVSVNAMGRLYAK IIGFSPVTRYMVYVVPIGILLAVPLVVLALSNHKNDIPVGRKKTQTDAGTQIVTGPPLFFLFLWIEITWISLWLA KIAAWFLPKAFTFFSGIVSMGVRKYATVLSNLTIPLSLFFSALASWLTFKNLFLEAVNNKITWVVTLERILGATF VSSAVLLGEKAIVQLMGVTYHQRSFANRIKASKREVHLLGLLYDASRTIFPMYCREFSDEDYIINDSIELMLENK TGIKGAGAATPMKIIGDVGRLGDKVTSAFGNFAQEITGKKVFNPNSAHSIVLEALEKRVSSEALGRRIWMSFVLE GNEALYLEDFQEVLGPDCLDEAEEIFNAFDNDVNGDISLDEMVRKVVEVGTERKAIGEGMKDIGQALRVFDKVLL FVVFLIVIFIFLFFFNSNVLTTVASAGTALLSLSFVFAVTTQEFLGSCIFLFVKHPYDVGDRVDISDTKMVVDRI SLLYTVFTRIDCMQVVQVPNIQLNTLWIENISRSKAMVETIELDVSYDTTFEDIELLRGEMEGFVRSPENSRDFQ PDFNISVGGVGDLDKMTLYISIKHKSNWHNEKVRAKRRSKFMCALALALKKIPIYGPGGGGETLGGPTNPTYSVA VSNDFASTARDEASKKKDAARMVPTKDNQTEEEMFQAEKQAILGLVARPTAVETESIWSGHNTEEQSGPQRSSSV NTRRSQEVGSLLLSRSSTRGRRKAGETLQHHLTHESSAAPSSPYVQRLETFDEEAQTDMPSSYYGGHPVGEEEVQ GLHPTASRRDPRRGHSLSSRRVSPDLR* |
| Coding | >OphauG2|5164 ATGTCTGACAACGGCATTCCTCTGACAAAGGTCAGGAGCAACGCTTCTGTTACCGGTGCGCGGAAGCCTACCCCG GGCAGCGTTGAGTCGTCACTCGGAAACGAAAAACGCAGTCTACACAATCGCCATGCTGGCCGACGAAAGAAACAT GGCGACCTTGGCCGCACTGGCACTGGTGGCTCCGACATTGTCAGCGTCAACGCCATGGGCAGACTCTACGCCAAG ATTATCGGCTTCTCACCTGTTACCCGATACATGGTCTATGTCGTGCCCATTGGCATCTTGCTAGCTGTCCCGCTT GTTGTCCTGGCCCTTTCCAATCATAAGAATGATATCCCCGTTGGCCGGAAGAAGACGCAGACAGACGCCGGCACA CAAATCGTCACAGGCCCGCCACTCTTTTTCCTCTTTTTGTGGATTGAAATCACTTGGATCTCTCTATGGCTAGCC AAAATTGCCGCCTGGTTTCTGCCAAAGGCCTTTACCTTTTTCAGCGGCATCGTGAGCATGGGCGTTCGCAAATAC GCCACTGTCCTCAGCAACTTGACCATTCCCCTCTCCCTCTTCTTTTCTGCCCTGGCCTCGTGGCTCACTTTTAAG AACCTCTTTCTCGAGGCGGTTAACAACAAAATCACCTGGGTCGTGACCCTTGAGCGCATTCTAGGAGCTACCTTC GTCTCCTCGGCTGTTTTGCTCGGCGAAAAAGCCATTGTCCAGTTGATGGGCGTCACTTATCATCAGCGTTCCTTT GCCAACCGCATCAAGGCCTCAAAGCGCGAGGTTCACCTGCTCGGCCTCTTATATGACGCTTCTCGAACCATTTTC CCCATGTACTGTCGAGAGTTTTCCGACGAGGACTACATCATCAATGACAGCATCGAGCTTATGCTGGAAAACAAG ACTGGAATCAAGGGTGCAGGCGCAGCCACTCCAATGAAGATTATTGGTGATGTTGGTCGTTTGGGAGACAAGGTT ACCTCTGCATTTGGCAACTTTGCTCAAGAAATCACGGGCAAAAAGGTCTTCAACCCCAACTCGGCCCACTCGATT GTCCTGGAAGCATTGGAGAAGCGAGTATCGTCAGAAGCTCTGGGCAGGCGCATTTGGATGTCGTTTGTGCTCGAG GGCAACGAAGCGCTTTACCTGGAAGATTTCCAAGAGGTTCTTGGCCCCGACTGCCTGGACGAAGCTGAAGAAATC TTCAATGCCTTTGACAACGATGTCAATGGTGACATTAGCCTGGACGAAATGGTGCGCAAAGTGGTCGAGGTTGGC ACAGAGCGCAAGGCTATTGGTGAGGGAATGAAGGACATTGGCCAGGCTTTGCGCGTCTTTGACAAGGTTTTGCTT TTCGTCGTCTTCCTCATTGTCATCTTCATCTTTCTATTCTTCTTCAACAGCAATGTTCTTACTACCGTTGCCAGC GCCGGCACGGCTCTCTTGTCTCTGTCCTTTGTCTTTGCTGTCACGACGCAAGAGTTCCTCGGTTCTTGCATTTTC TTGTTTGTCAAGCATCCTTATGACGTTGGAGACCGAGTCGATATTAGCGATACCAAGATGGTGGTGGACAGAATC TCTTTGCTTTACACAGTATTTACTCGCATCGACTGTATGCAGGTGGTTCAGGTGCCAAACATTCAGCTCAATACG CTGTGGATCGAAAATATCTCTCGCAGCAAGGCCATGGTGGAGACAATTGAGCTCGACGTTTCCTATGATACCACT TTTGAAGATATCGAACTGCTTCGCGGCGAAATGGAGGGCTTTGTCCGGTCACCAGAAAACTCGCGCGACTTCCAG CCCGACTTCAATATTAGCGTGGGCGGCGTGGGCGATCTCGACAAGATGACGCTGTATATTAGCATCAAGCACAAG TCAAATTGGCACAACGAAAAGGTGCGGGCCAAGCGCAGGTCTAAGTTTATGTGCGCTCTGGCTCTCGCGCTCAAG AAGATTCCAATTTACGGACCGGGCGGCGGCGGCGAAACTCTTGGCGGGCCGACAAATCCTACATACTCGGTGGCT GTTTCCAATGACTTTGCTTCCACAGCCCGCGATGAGGCTTCCAAGAAGAAGGATGCGGCACGCATGGTGCCCACC AAAGACAACCAGACAGAAGAAGAGATGTTCCAAGCCGAAAAGCAAGCCATTCTCGGCCTGGTTGCACGTCCCACT GCTGTTGAGACGGAGTCGATCTGGAGCGGACATAATACTGAAGAACAGAGCGGTCCTCAGCGCTCATCATCAGTC AACACGCGCCGGTCGCAAGAGGTGGGCTCGCTGCTTCTCTCGCGCTCGAGCACGCGAGGCCGAAGGAAGGCTGGA GAGACTCTGCAGCATCATTTGACGCACGAAAGCAGTGCAGCACCCAGCTCGCCATATGTGCAGAGACTGGAGACG TTTGACGAAGAGGCACAGACGGATATGCCGTCGTCGTACTATGGCGGACATCCTGTTGGCGAGGAAGAGGTGCAG GGCCTGCATCCGACTGCATCGCGGCGCGATCCTCGTCGTGGGCATAGCTTGTCTTCGAGAAGAGTGTCGCCAGAC TTGCGCTAA |
| Transcript | >OphauG2|5164 ATGTCTGACAACGGCATTCCTCTGACAAAGGTCAGGAGCAACGCTTCTGTTACCGGTGCGCGGAAGCCTACCCCG GGCAGCGTTGAGTCGTCACTCGGAAACGAAAAACGCAGTCTACACAATCGCCATGCTGGCCGACGAAAGAAACAT GGCGACCTTGGCCGCACTGGCACTGGTGGCTCCGACATTGTCAGCGTCAACGCCATGGGCAGACTCTACGCCAAG ATTATCGGCTTCTCACCTGTTACCCGATACATGGTCTATGTCGTGCCCATTGGCATCTTGCTAGCTGTCCCGCTT GTTGTCCTGGCCCTTTCCAATCATAAGAATGATATCCCCGTTGGCCGGAAGAAGACGCAGACAGACGCCGGCACA CAAATCGTCACAGGCCCGCCACTCTTTTTCCTCTTTTTGTGGATTGAAATCACTTGGATCTCTCTATGGCTAGCC AAAATTGCCGCCTGGTTTCTGCCAAAGGCCTTTACCTTTTTCAGCGGCATCGTGAGCATGGGCGTTCGCAAATAC GCCACTGTCCTCAGCAACTTGACCATTCCCCTCTCCCTCTTCTTTTCTGCCCTGGCCTCGTGGCTCACTTTTAAG AACCTCTTTCTCGAGGCGGTTAACAACAAAATCACCTGGGTCGTGACCCTTGAGCGCATTCTAGGAGCTACCTTC GTCTCCTCGGCTGTTTTGCTCGGCGAAAAAGCCATTGTCCAGTTGATGGGCGTCACTTATCATCAGCGTTCCTTT GCCAACCGCATCAAGGCCTCAAAGCGCGAGGTTCACCTGCTCGGCCTCTTATATGACGCTTCTCGAACCATTTTC CCCATGTACTGTCGAGAGTTTTCCGACGAGGACTACATCATCAATGACAGCATCGAGCTTATGCTGGAAAACAAG ACTGGAATCAAGGGTGCAGGCGCAGCCACTCCAATGAAGATTATTGGTGATGTTGGTCGTTTGGGAGACAAGGTT ACCTCTGCATTTGGCAACTTTGCTCAAGAAATCACGGGCAAAAAGGTCTTCAACCCCAACTCGGCCCACTCGATT GTCCTGGAAGCATTGGAGAAGCGAGTATCGTCAGAAGCTCTGGGCAGGCGCATTTGGATGTCGTTTGTGCTCGAG GGCAACGAAGCGCTTTACCTGGAAGATTTCCAAGAGGTTCTTGGCCCCGACTGCCTGGACGAAGCTGAAGAAATC TTCAATGCCTTTGACAACGATGTCAATGGTGACATTAGCCTGGACGAAATGGTGCGCAAAGTGGTCGAGGTTGGC ACAGAGCGCAAGGCTATTGGTGAGGGAATGAAGGACATTGGCCAGGCTTTGCGCGTCTTTGACAAGGTTTTGCTT TTCGTCGTCTTCCTCATTGTCATCTTCATCTTTCTATTCTTCTTCAACAGCAATGTTCTTACTACCGTTGCCAGC GCCGGCACGGCTCTCTTGTCTCTGTCCTTTGTCTTTGCTGTCACGACGCAAGAGTTCCTCGGTTCTTGCATTTTC TTGTTTGTCAAGCATCCTTATGACGTTGGAGACCGAGTCGATATTAGCGATACCAAGATGGTGGTGGACAGAATC TCTTTGCTTTACACAGTATTTACTCGCATCGACTGTATGCAGGTGGTTCAGGTGCCAAACATTCAGCTCAATACG CTGTGGATCGAAAATATCTCTCGCAGCAAGGCCATGGTGGAGACAATTGAGCTCGACGTTTCCTATGATACCACT TTTGAAGATATCGAACTGCTTCGCGGCGAAATGGAGGGCTTTGTCCGGTCACCAGAAAACTCGCGCGACTTCCAG CCCGACTTCAATATTAGCGTGGGCGGCGTGGGCGATCTCGACAAGATGACGCTGTATATTAGCATCAAGCACAAG TCAAATTGGCACAACGAAAAGGTGCGGGCCAAGCGCAGGTCTAAGTTTATGTGCGCTCTGGCTCTCGCGCTCAAG AAGATTCCAATTTACGGACCGGGCGGCGGCGGCGAAACTCTTGGCGGGCCGACAAATCCTACATACTCGGTGGCT GTTTCCAATGACTTTGCTTCCACAGCCCGCGATGAGGCTTCCAAGAAGAAGGATGCGGCACGCATGGTGCCCACC AAAGACAACCAGACAGAAGAAGAGATGTTCCAAGCCGAAAAGCAAGCCATTCTCGGCCTGGTTGCACGTCCCACT GCTGTTGAGACGGAGTCGATCTGGAGCGGACATAATACTGAAGAACAGAGCGGTCCTCAGCGCTCATCATCAGTC AACACGCGCCGGTCGCAAGAGGTGGGCTCGCTGCTTCTCTCGCGCTCGAGCACGCGAGGCCGAAGGAAGGCTGGA GAGACTCTGCAGCATCATTTGACGCACGAAAGCAGTGCAGCACCCAGCTCGCCATATGTGCAGAGACTGGAGACG TTTGACGAAGAGGCACAGACGGATATGCCGTCGTCGTACTATGGCGGACATCCTGTTGGCGAGGAAGAGGTGCAG GGCCTGCATCCGACTGCATCGCGGCGCGATCCTCGTCGTGGGCATAGCTTGTCTTCGAGAAGAGTGTCGCCAGAC TTGCGCTAA |
| Gene | >OphauG2|5164 ATGTCTGACAACGGCATTCCTCTGACAAAGGTCAGGAGCAACGCTTCTGTTACCGGTGCGCGGAAGCCTACCCCG GGCAGCGTTGAGTCGTCACTCGGAAACGAAAAACGCAGTCTACACAATCGCCATGCTGGCCGACGAAAGAAACAT GGCGACCTTGGCCGCACTGGCACTGGTGGCTCCGACATTGTCAGCGTCAACGCCATGGGCAGACTCTACGCCAAG ATTATCGGCTTCTCACCTGTTACCCGATACATGGTCTATGTCGTGCCCATTGGCATCTTGCTAGCTGTCCCGCTT GTTGTCCTGGCCCTTTCCAATCATAAGAATGATATCCCCGTTGGCCGGAAGAAGACGCAGACAGACGCCGGCACA CAAATCGTCACAGGCCCGCCACTCTTTTTCCTCTTTTTGTGGATTGAAATCACTTGGATCTCTCTATGGCTAGCC AAAATTGCCGCCTGGTTTCTGCCAAAGGCCTTTACCTTTTTCAGCGGCATCGTGAGCATGGGCGTTCGCAAATAC GCCACTGTCCTCAGCAACTTGACCATTCCCCTCTCCCTCTTCTTTTCTGCCCTGGCCTCGTGGCTCACTTTTAAG AACCTCTTTCTCGAGGCGGTTAACAACAAAATCACCTGGGTCGTGACCCTTGAGCGCATTCTAGGAGCTACCTTC GTCTCCTCGGCTGTTTTGCTCGGCGAAAAAGCCATTGTCCAGTTGATGGGCGTCACTTATCATCAGCGTTCCTTT GCCAACCGCATCAAGGCCTCAAAGCGCGAGGTTCACCTGCTCGGCCTCTTATATGACGCTTCTCGAACCATTTTC CCCATGTACTGTCGAGAGTTTTCCGACGAGGACTACATCATCAATGACAGCATCGAGCTTATGCTGGAAAACAAG ACTGGAATCAAGGGTGCAGGCGCAGCCACTCCAATGAAGATTATTGGTGATGTTGGTCGTTTGGGAGACAAGGTT ACCTCTGCATTTGGCAACTTTGCTCAAGAAATCACGGGCAAAAAGGTCTTCAACCCCAACTCGGCCCACTCGATT GTCCTGGAAGCATTGGAGAAGCGAGTATCGTCAGAAGCTCTGGGCAGGCGCATTTGGATGTCGTTTGTGCTCGAG GGCAACGAAGCGCTTTACCTGGAAGATTTCCAAGAGGTTCTTGGCCCCGACTGCCTGGACGAAGCTGAAGAAATC TTCAATGCCTTTGACAACGATGTCAATGGTGACATTAGCCTGGACGAAATGGTGCGCAAAGTGGTCGAGGTTGGC ACAGAGCGCAAGGCTATTGGTGAGGGAATGAAGGACATTGGCCAGGCTTTGCGCGTCTTTGACAAGGTTTTGCTT TTCGTCGTCTTCCTCATTGTCATCTTCATCTTTCGTAAGTCTTGTCGTGCGGCTTGGCCTCGAAGCTGATGATGG ACTGCTAACGGCTATTGGACAGTATTCTTCTTCAACAGCAATGTTCTTACTACCGTTGCCAGCGCCGGCACGGCT CTCTTGTCTCTGTCCTTTGTCTTTGCTGTCACGACGCAAGAGTTCCTCGGTTCTTGCATTTTCTTGTTTGTCAAG CATCCTTATGACGTTGGAGACCGAGTCGATATTAGCGATACCAAGATGGTGGTGGACAGAATCTCTTTGCTTTAC ACAGTATTTACTCGCATCGACTGTATGCAGGTGGTTCAGGTAAGCTTTACATGTCCAAAGCGAGCGCCTTGAAAG CACCTCAAAAGGCTGACTGGCTTGGAACAGGTGCCAAACATTCAGCTCAATACGCTGTGGATCGAAAATATCTCT CGCAGCAAGGCCATGGTGGAGACAATTGAGCTCGACGTTTCCTATGATACCACTTTTGAAGATATCGAACTGCTT CGCGGCGAAATGGAGGGCTTTGTCCGGTCACCAGAAAACTCGCGCGACTTCCAGCCCGACTTCAATATTAGCGTG GGCGGCGTGGGCGATCTCGACAAGATGACGCTGTATATTAGCATCAAGCACAAGTCAAATTGGCACAACGAAAAG GTGCGGGCCAAGCGCAGGTCTAAGTTTATGTGCGCTCTGGCTCTCGCGCTCAAGAAGATTCCAATTTACGGACCG GGCGGCGGCGGCGAAACTCTTGGCGGGCCGACAAATCCTACATACTCGGTGGCTGTTTCCAATGACTTTGCTTCC ACAGCCCGCGATGAGGCTTCCAAGAAGAAGGATGCGGCACGCATGGTGCCCACCAAAGACAACCAGACAGAAGAA GAGATGTTCCAAGCCGAAAAGCAAGCCATTCTCGGCCTGGTTGCACGTCCCACTGCTGTTGAGACGGAGTCGATC TGGAGCGGACATAATACTGAAGAACAGAGCGGTCCTCAGCGCTCATCATCAGTCAACACGCGCCGGTCGCAAGAG GTGGGCTCGCTGCTTCTCTCGCGCTCGAGCACGCGAGGCCGAAGGAAGGCTGGAGAGACTCTGCAGCATCATTTG ACGCACGAAAGCAGTGCAGCACCCAGCTCGCCATATGTGCAGAGACTGGAGACGTTTGACGAAGAGGCACAGACG GATATGCCGTCGTCGTACTATGGCGGACATCCTGTTGGCGAGGAAGAGGTGCAGGGCCTGCATCCGACTGCATCG CGGCGCGATCCTCGTCGTGGGCATAGCTTGTCTTCGAGAAGAGTGTCGCCAGACTTGCGCTAA |