© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|5039 |
| Gene name | |
| Location | Contig_444:14561..15327 |
| Strand | + |
| Gene length (bp) | 766 |
| Transcript length (bp) | 720 |
| Coding sequence length (bp) | 720 |
| Protein length (aa) | 240 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03824 | NicO | High-affinity nickel-transport protein | 8.9E-44 | 54 | 233 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74869|NIC1_SCHPO | High-affinity nickel transport protein nic1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nic1 PE=3 SV=3 | 6 | 236 | 3.0E-49 |
| sp|P23516|HOXN_CUPNH | High-affinity nickel transport protein OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxN PE=1 SV=3 | 13 | 236 | 8.0E-44 |
| sp|Q45247|HUPN_BRADU | Hydrogenase nickel incorporation protein HupN OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=hupN PE=3 SV=1 | 47 | 232 | 8.0E-30 |
| sp|Q48262|NIXA_HELPY | High-affinity nickel-transport protein NixA OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=nixA PE=1 SV=2 | 52 | 234 | 7.0E-26 |
| sp|Q9ZM74|NIXA_HELPJ | High-affinity nickel-transport protein NixA OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=nixA PE=3 SV=1 | 52 | 234 | 2.0E-25 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74869|NIC1_SCHPO | High-affinity nickel transport protein nic1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nic1 PE=3 SV=3 | 6 | 236 | 3.0E-49 |
| sp|P23516|HOXN_CUPNH | High-affinity nickel transport protein OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxN PE=1 SV=3 | 13 | 236 | 8.0E-44 |
| sp|Q45247|HUPN_BRADU | Hydrogenase nickel incorporation protein HupN OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=hupN PE=3 SV=1 | 47 | 232 | 8.0E-30 |
| sp|Q48262|NIXA_HELPY | High-affinity nickel-transport protein NixA OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=nixA PE=1 SV=2 | 52 | 234 | 7.0E-26 |
| sp|Q9ZM74|NIXA_HELPJ | High-affinity nickel-transport protein NixA OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=nixA PE=3 SV=1 | 52 | 234 | 2.0E-25 |
| sp|P96454|NHLF_RHORH | Cobalt transport protein NhlF OS=Rhodococcus rhodochrous GN=nhlF PE=1 SV=1 | 55 | 236 | 1.0E-21 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035444 | nickel cation transmembrane transport | Yes |
| GO:0015099 | nickel cation transmembrane transporter activity | Yes |
| GO:0005887 | integral component of plasma membrane | Yes |
| GO:0055085 | transmembrane transport | No |
| GO:0009987 | cellular process | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008150 | biological_process | No |
| GO:0006811 | ion transport | No |
| GO:0016021 | integral component of membrane | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0030001 | metal ion transport | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0005215 | transporter activity | No |
| GO:0031226 | intrinsic component of plasma membrane | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0000041 | transition metal ion transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0015675 | nickel cation transport | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0006810 | transport | No |
| GO:0006812 | cation transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 93 | 115 | 22 |
| 3 | 130 | 152 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|5039 MAPILNFLVEKPRLLGGIPSNSIAIIILLVAVNLTTWATSGIILRFHPRLASPAVLAYTLGLRHALDADHVSAID LVTRRLIAAGQRPASVGCFFSLGHSTVVIITCVVVAASSGALRDRFDGFSRVGNIIGTAVSAAFLIILCLGNAWV LYKLVKRLQQVLQQRSPVALEQGVAANDNDDDASPDALASGQFHLEGAGFLARVFKTLFKAIDRPWKMYPLGIVF GLGFDTSAPASGSF* |
| Coding | >OphauG2|5039 ATGGCGCCAATCCTCAACTTCCTTGTCGAAAAGCCGCGTCTTCTCGGCGGCATCCCGTCAAACAGCATCGCAATC ATCATACTGCTCGTGGCCGTCAACCTCACCACATGGGCCACGTCGGGCATCATTCTGCGCTTCCACCCGCGGCTC GCGTCCCCCGCCGTGCTGGCCTACACGCTTGGCCTCCGCCACGCGCTCGACGCAGACCACGTCTCCGCCATTGAC CTTGTCACGCGCCGCCTCATTGCTGCCGGGCAGCGGCCCGCGTCGGTCGGCTGCTTCTTCTCCCTCGGCCACAGC ACCGTCGTCATCATCACGTGTGTCGTTGTTGCGGCCTCGTCGGGCGCGCTGCGAGATCGCTTTGATGGCTTTAGT CGCGTCGGCAACATTATTGGCACTGCCGTCAGTGCTGCCTTTTTAATCATCTTGTGCTTGGGAAATGCTTGGGTC CTGTACAAGCTGGTCAAGAGACTGCAACAAGTCTTGCAGCAACGCAGCCCCGTTGCCCTCGAACAAGGTGTTGCT GCAAATGACAACGACGACGACGCGTCCCCAGATGCCCTGGCTAGCGGCCAGTTCCACCTCGAGGGCGCCGGCTTC CTCGCTAGAGTCTTCAAGACGCTCTTCAAGGCCATTGACCGCCCGTGGAAAATGTATCCCCTCGGCATCGTCTTT GGCCTTGGCTTCGACACCTCGGCACCAGCATCTGGCTCATTCTAA |
| Transcript | >OphauG2|5039 ATGGCGCCAATCCTCAACTTCCTTGTCGAAAAGCCGCGTCTTCTCGGCGGCATCCCGTCAAACAGCATCGCAATC ATCATACTGCTCGTGGCCGTCAACCTCACCACATGGGCCACGTCGGGCATCATTCTGCGCTTCCACCCGCGGCTC GCGTCCCCCGCCGTGCTGGCCTACACGCTTGGCCTCCGCCACGCGCTCGACGCAGACCACGTCTCCGCCATTGAC CTTGTCACGCGCCGCCTCATTGCTGCCGGGCAGCGGCCCGCGTCGGTCGGCTGCTTCTTCTCCCTCGGCCACAGC ACCGTCGTCATCATCACGTGTGTCGTTGTTGCGGCCTCGTCGGGCGCGCTGCGAGATCGCTTTGATGGCTTTAGT CGCGTCGGCAACATTATTGGCACTGCCGTCAGTGCTGCCTTTTTAATCATCTTGTGCTTGGGAAATGCTTGGGTC CTGTACAAGCTGGTCAAGAGACTGCAACAAGTCTTGCAGCAACGCAGCCCCGTTGCCCTCGAACAAGGTGTTGCT GCAAATGACAACGACGACGACGCGTCCCCAGATGCCCTGGCTAGCGGCCAGTTCCACCTCGAGGGCGCCGGCTTC CTCGCTAGAGTCTTCAAGACGCTCTTCAAGGCCATTGACCGCCCGTGGAAAATGTATCCCCTCGGCATCGTCTTT GGCCTTGGCTTCGACACCTCGGCACCAGCATCTGGCTCATTCTAA |
| Gene | >OphauG2|5039 ATGGCGCCAATCCTCAACTTCCTTGTCGAAAAGCCGCGTCTTCTCGGCGGCATCCCGTCAAACAGCATCGCAATC ATCATACTGCTCGTGGCCGTCAACCTCACCACATGGGCCACGTCGGGCATCATTCTGCGCTTCCACCCGCGGCTC GCGTCCCCCGCCGTGCTGGCCTACACGCTTGGCCTCCGCCACGCGCTCGACGCAGACCACGTCTCCGCCATTGAC CTTGTCACGCGCCGCCTCATTGCTGCCGGGCAGCGGCCCGCGTCGGTCGGCTGCTTCTTCTCCCTCGGCCACAGC ACCGTCGTCATCATCACGTGTGTCGTTGTTGCGGCCTCGTCGGGCGCGCTGCGAGATCGCTTTGATGGCTTTAGT CGCGTCGGCAACATTATTGGCACTGCCGTCAGTGCTGCCTTTTTAATCATCTTGTGCTTGGGAAATGCTTGGGTC CTGTACAAGCTGGTCAAGAGACTGCAACAAGTCTTGCAGCAACGCAGCCCCGTTGCCCTCGAACAAGGTGTTGCT GCAAATGACAACGACGACGACGCGTCCCCAGATGCCCTGGCTAGCGGCCAGTTCCACCTCGAGGGCGCCGGCTTC CTCGCTAGAGTCTTCAAGACGCTCTTCAAGGCCATTGACCGCCCGTGGAAAATGTATCCCCTCGGCATCGTCTTT GGCCTTGGCTTCGACACCTCGTCGGAAATTGCCATTCTCGGCATTGCCAGCATACAAGCAATCAAGGGCACCAGC ATCTGGCTCATTCTAA |