© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4976 |
| Gene name | |
| Location | Contig_437:14618..15453 |
| Strand | - |
| Gene length (bp) | 835 |
| Transcript length (bp) | 612 |
| Coding sequence length (bp) | 612 |
| Protein length (aa) | 204 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q69YG0|TMM42_HUMAN | Transmembrane protein 42 OS=Homo sapiens GN=TMEM42 PE=2 SV=2 | 63 | 151 | 3.0E-07 |
| sp|Q5R7Q1|TMM42_PONAB | Transmembrane protein 42 OS=Pongo abelii GN=TMEM42 PE=2 SV=1 | 63 | 151 | 4.0E-07 |
| sp|Q2KIX3|TMM42_BOVIN | Transmembrane protein 42 OS=Bos taurus GN=TMEM42 PE=2 SV=1 | 61 | 154 | 1.0E-06 |
| sp|Q9CR22|TMM42_MOUSE | Transmembrane protein 42 OS=Mus musculus GN=Tmem42 PE=2 SV=1 | 63 | 144 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 34 | 19 |
| 2 | 65 | 87 | 22 |
| 3 | 97 | 119 | 22 |
| 4 | 126 | 143 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4976 MASSCPAPSPWASRTQWLGLAVASGACAAFNGVFAKLTTTHRTSYIAAFIARLTHLESTERLVDLALRAIFFILN LSFNGIMWTLFTKALASGSSTTQVSIVNTSTNFVLTALLGLAVFSESLPSLWWAGAALLVAGNVIIGSKDDDKSE PPKPFDAASDSLSTSVDADESKPLLRPSLRSVTLVDEDVPHLEPLLNDQVSET* |
| Coding | >OphauG2|4976 ATGGCCTCCTCTTGTCCAGCTCCCTCGCCCTGGGCCTCGCGTACCCAGTGGCTAGGCCTCGCCGTCGCTAGTGGA GCTTGTGCCGCCTTCAACGGCGTCTTTGCAAAGCTCACAACCACGCACCGCACCTCTTACATTGCTGCCTTTATT GCACGTCTGACGCACCTCGAGTCCACCGAGCGTCTTGTCGATCTTGCTCTCCGCGCCATCTTCTTCATCCTCAAC CTCTCCTTCAACGGCATTATGTGGACCCTCTTCACCAAGGCTCTCGCAAGCGGCTCCTCAACCACCCAAGTCTCC ATTGTCAATACTTCTACAAACTTTGTCCTTACCGCCCTGCTCGGCCTTGCCGTCTTTTCAGAATCACTGCCCTCG TTATGGTGGGCTGGTGCTGCTCTTTTGGTTGCAGGCAACGTCATTATTGGCTCCAAGGACGACGACAAGTCTGAG CCTCCGAAACCATTCGACGCCGCCTCGGATTCTCTTTCAACCTCGGTCGATGCCGACGAGTCCAAGCCTCTATTG CGCCCGAGCCTTCGATCCGTGACCCTTGTCGATGAAGATGTGCCTCACCTCGAACCTCTTTTGAACGACCAAGTC AGCGAGACTTGA |
| Transcript | >OphauG2|4976 ATGGCCTCCTCTTGTCCAGCTCCCTCGCCCTGGGCCTCGCGTACCCAGTGGCTAGGCCTCGCCGTCGCTAGTGGA GCTTGTGCCGCCTTCAACGGCGTCTTTGCAAAGCTCACAACCACGCACCGCACCTCTTACATTGCTGCCTTTATT GCACGTCTGACGCACCTCGAGTCCACCGAGCGTCTTGTCGATCTTGCTCTCCGCGCCATCTTCTTCATCCTCAAC CTCTCCTTCAACGGCATTATGTGGACCCTCTTCACCAAGGCTCTCGCAAGCGGCTCCTCAACCACCCAAGTCTCC ATTGTCAATACTTCTACAAACTTTGTCCTTACCGCCCTGCTCGGCCTTGCCGTCTTTTCAGAATCACTGCCCTCG TTATGGTGGGCTGGTGCTGCTCTTTTGGTTGCAGGCAACGTCATTATTGGCTCCAAGGACGACGACAAGTCTGAG CCTCCGAAACCATTCGACGCCGCCTCGGATTCTCTTTCAACCTCGGTCGATGCCGACGAGTCCAAGCCTCTATTG CGCCCGAGCCTTCGATCCGTGACCCTTGTCGATGAAGATGTGCCTCACCTCGAACCTCTTTTGAACGACCAAGTC AGCGAGACTTGA |
| Gene | >OphauG2|4976 ATGGCCTCCTCTTGTCCAGCTCCCTCGCCCTGGGCCTCGCGTACCCAGTGGCTAGGCCTCGCCGTCGCTAGTGGA GCTTGTGCCGCCTTCAACGGCGTCTTTGCAAAGCTGTAAACCCTTCCCTCTGCGCCTCTACGCCTCTCAGCTAAC ACGCCTTAGCACAACCACGCACCGCACCTCTTACATTGCTGCCTTTATTGCACGTCTGACGCACCTCGAGTCCAC CGAGCGTCTTGTCGATCTTGCTCTCCGCGCCGTAGGGCCCTCTATGCCACATTTCTCGTCTCTTGATGCCTCTCT CCAAGACGCTGACTTTTCCCCCCGCCCCTGTCCTCTTCTAGATCTTCTTCATCCTCAACCTCTCCTTCAACGGCA TTGTACGTTTTGCCCCTAGTTCCCCAAACACCCTCCGTTTTTGTTCTTCTCTCCAACATTGGGCTGACAAGACCC AACCTGACCCTTGTAGATGTGGACCCTCTTCACCAAGGCTCTCGCAAGCGGCTCCTCAACCACCCAAGTCTCCAT TGTCAATACTTCTACAAACTTTGTCCTTACCGCCCTGCTCGGCCTTGCCGTCTTTTCAGAATCACTGCCCTCGTT ATGGTGGGCTGGTGCTGCTCTTTTGGTTGCAGGCAACGTCATTATTGGCTCCAAGGACGACGACAAGTCTGAGCC TCCGAAACCATTCGACGCCGCCTCGGATTCTCTTTCAACCTCGGTCGATGCCGACGAGTCCAAGCCTCTATTGCG CCCGAGCCTTCGATCCGTGACCCTTGTCGATGAAGATGTGCCTCACCTCGAACCTCTTTTGAACGACCAAGTCAG CGAGACTTGA |