© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4884 |
| Gene name | |
| Location | Contig_423:15254..15932 |
| Strand | - |
| Gene length (bp) | 678 |
| Transcript length (bp) | 678 |
| Coding sequence length (bp) | 678 |
| Protein length (aa) | 226 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02214 | BTB_2 | BTB/POZ domain | 4.2E-08 | 24 | 113 |
| PF00651 | BTB | BTB/POZ domain | 9.0E-06 | 23 | 117 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A3KMV1|SHKB1_BOVIN | SH3KBP1-binding protein 1 OS=Bos taurus GN=SHKBP1 PE=2 SV=1 | 14 | 113 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0051260 | protein homooligomerization | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016043 | cellular component organization | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0005488 | binding | No |
| GO:0051259 | protein complex oligomerization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0008150 | biological_process | No |
| GO:0022607 | cellular component assembly | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4884 MANEFEISAMIVRVPANHPRSRTIKLQVGERFFTTERETLVFESSYFDAVLAEHRDGEEETIFVDADPHLFEHIL GYLRHGHFPIFYHGATGHDIGRYQALLAEAQFFGIKKLEDWLHKEKYFEAVKTTMRCEVFPDSSAVREADGEWDS RTTVQIFPSWFLRQVYRCPRGIAVHAGDATLCGKKCLRALNFTFPQCETQASVSMLRVVTRTYLVPYVEDVSTGA * |
| Coding | >OphauG2|4884 ATGGCAAACGAATTTGAAATTAGTGCCATGATCGTAAGAGTGCCTGCGAACCACCCAAGAAGCCGCACAATCAAG CTCCAAGTGGGCGAGAGATTCTTCACCACAGAGCGCGAAACTCTAGTCTTTGAAAGCTCCTACTTTGACGCCGTG CTCGCTGAGCATCGGGACGGGGAAGAAGAGACCATTTTTGTCGACGCGGACCCGCATCTCTTTGAACATATTCTG GGCTACCTCCGCCACGGCCACTTTCCCATCTTTTACCACGGCGCCACGGGCCACGATATCGGCCGATACCAGGCA CTCCTAGCCGAGGCGCAGTTTTTTGGAATCAAGAAACTGGAGGATTGGCTGCACAAGGAGAAGTACTTTGAAGCC GTCAAGACGACGATGCGGTGTGAAGTCTTTCCAGACTCTAGTGCAGTGCGCGAGGCCGACGGGGAGTGGGATTCG CGCACGACTGTGCAGATCTTTCCGTCGTGGTTTCTTCGACAGGTGTATCGCTGTCCGCGCGGCATCGCGGTCCAT GCGGGAGATGCGACGCTCTGTGGGAAAAAATGTCTCAGGGCGCTCAACTTTACTTTCCCGCAGTGCGAGACCCAG GCCTCGGTGTCGATGCTAAGGGTGGTGACGAGGACGTATCTGGTGCCGTATGTCGAAGACGTGTCGACGGGAGCC TAG |
| Transcript | >OphauG2|4884 ATGGCAAACGAATTTGAAATTAGTGCCATGATCGTAAGAGTGCCTGCGAACCACCCAAGAAGCCGCACAATCAAG CTCCAAGTGGGCGAGAGATTCTTCACCACAGAGCGCGAAACTCTAGTCTTTGAAAGCTCCTACTTTGACGCCGTG CTCGCTGAGCATCGGGACGGGGAAGAAGAGACCATTTTTGTCGACGCGGACCCGCATCTCTTTGAACATATTCTG GGCTACCTCCGCCACGGCCACTTTCCCATCTTTTACCACGGCGCCACGGGCCACGATATCGGCCGATACCAGGCA CTCCTAGCCGAGGCGCAGTTTTTTGGAATCAAGAAACTGGAGGATTGGCTGCACAAGGAGAAGTACTTTGAAGCC GTCAAGACGACGATGCGGTGTGAAGTCTTTCCAGACTCTAGTGCAGTGCGCGAGGCCGACGGGGAGTGGGATTCG CGCACGACTGTGCAGATCTTTCCGTCGTGGTTTCTTCGACAGGTGTATCGCTGTCCGCGCGGCATCGCGGTCCAT GCGGGAGATGCGACGCTCTGTGGGAAAAAATGTCTCAGGGCGCTCAACTTTACTTTCCCGCAGTGCGAGACCCAG GCCTCGGTGTCGATGCTAAGGGTGGTGACGAGGACGTATCTGGTGCCGTATGTCGAAGACGTGTCGACGGGAGCC TAG |
| Gene | >OphauG2|4884 ATGGCAAACGAATTTGAAATTAGTGCCATGATCGTAAGAGTGCCTGCGAACCACCCAAGAAGCCGCACAATCAAG CTCCAAGTGGGCGAGAGATTCTTCACCACAGAGCGCGAAACTCTAGTCTTTGAAAGCTCCTACTTTGACGCCGTG CTCGCTGAGCATCGGGACGGGGAAGAAGAGACCATTTTTGTCGACGCGGACCCGCATCTCTTTGAACATATTCTG GGCTACCTCCGCCACGGCCACTTTCCCATCTTTTACCACGGCGCCACGGGCCACGATATCGGCCGATACCAGGCA CTCCTAGCCGAGGCGCAGTTTTTTGGAATCAAGAAACTGGAGGATTGGCTGCACAAGGAGAAGTACTTTGAAGCC GTCAAGACGACGATGCGGTGTGAAGTCTTTCCAGACTCTAGTGCAGTGCGCGAGGCCGACGGGGAGTGGGATTCG CGCACGACTGTGCAGATCTTTCCGTCGTGGTTTCTTCGACAGGTGTATCGCTGTCCGCGCGGCATCGCGGTCCAT GCGGGAGATGCGACGCTCTGTGGGAAAAAATGTCTCAGGGCGCTCAACTTTACTTTCCCGCAGTGCGAGACCCAG GCCTCGGTGTCGATGCTAAGGGTGGTGACGAGGACGTATCTGGTGCCGTATGTCGAAGACGTGTCGACGGGAGCC TAG |