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| Protein ID | OphauG2|4882 |
| Gene name | |
| Location | Contig_423:10391..11789 |
| Strand | + |
| Gene length (bp) | 1398 |
| Transcript length (bp) | 594 |
| Coding sequence length (bp) | 594 |
| Protein length (aa) | 198 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.0E-11 | 8 | 72 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10193|SRP1_SCHPO | Pre-mRNA-splicing factor srp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp1 PE=1 SV=3 | 7 | 86 | 5.0E-31 |
| sp|C6Y4C0|YFMR_SCHPO | Putative splicing factor C222.18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC222.18 PE=2 SV=1 | 5 | 84 | 6.0E-17 |
| sp|Q4WAQ9|PPIL4_ASPFU | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cyp6 PE=3 SV=1 | 7 | 103 | 7.0E-08 |
| sp|G3V6S8|SRSF6_RAT | Serine/arginine-rich splicing factor 6 OS=Rattus norvegicus GN=Srsf6 PE=1 SV=1 | 8 | 85 | 5.0E-07 |
| sp|Q3TWW8|SRSF6_MOUSE | Serine/arginine-rich splicing factor 6 OS=Mus musculus GN=Srsf6 PE=1 SV=1 | 8 | 85 | 5.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10193|SRP1_SCHPO | Pre-mRNA-splicing factor srp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp1 PE=1 SV=3 | 7 | 86 | 5.0E-31 |
| sp|C6Y4C0|YFMR_SCHPO | Putative splicing factor C222.18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC222.18 PE=2 SV=1 | 5 | 84 | 6.0E-17 |
| sp|Q4WAQ9|PPIL4_ASPFU | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cyp6 PE=3 SV=1 | 7 | 103 | 7.0E-08 |
| sp|G3V6S8|SRSF6_RAT | Serine/arginine-rich splicing factor 6 OS=Rattus norvegicus GN=Srsf6 PE=1 SV=1 | 8 | 85 | 5.0E-07 |
| sp|Q3TWW8|SRSF6_MOUSE | Serine/arginine-rich splicing factor 6 OS=Mus musculus GN=Srsf6 PE=1 SV=1 | 8 | 85 | 5.0E-07 |
| sp|O22703|RZ1B_ARATH | Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1 | 8 | 72 | 5.0E-07 |
| sp|Q5ARI5|PPIL4_EMENI | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cyp6 PE=3 SV=1 | 7 | 165 | 6.0E-07 |
| sp|Q13247|SRSF6_HUMAN | Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2 | 8 | 85 | 7.0E-07 |
| sp|Q8WXF0|SRS12_HUMAN | Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1 | 6 | 83 | 1.0E-06 |
| sp|Q3B7L6|SRSF6_BOVIN | Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2 SV=1 | 8 | 85 | 1.0E-06 |
| sp|Q2U256|PPIL4_ASPOR | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1 | 7 | 150 | 1.0E-06 |
| sp|O88453|SAFB1_RAT | Scaffold attachment factor B1 OS=Rattus norvegicus GN=Safb PE=1 SV=2 | 2 | 160 | 1.0E-06 |
| sp|P0C1I6|PPIL4_RHIO9 | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp13 PE=3 SV=1 | 7 | 71 | 2.0E-06 |
| sp|Q8VE97|SRSF4_MOUSE | Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4 PE=2 SV=1 | 8 | 85 | 5.0E-06 |
| sp|Q8VYA5|RSZ33_ARATH | Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana GN=RS2Z33 PE=1 SV=1 | 4 | 94 | 6.0E-06 |
| sp|Q08170|SRSF4_HUMAN | Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4 PE=1 SV=2 | 8 | 85 | 6.0E-06 |
| sp|P0C196|PPIL4_USTMA | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CYP6 PE=3 SV=1 | 7 | 71 | 6.0E-06 |
| sp|P92964|SRS31_ARATH | Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2 | 8 | 83 | 7.0E-06 |
| sp|P0CP88|PPIL4_CRYNJ | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CYP6 PE=3 SV=1 | 7 | 71 | 8.0E-06 |
| sp|P0CP89|PPIL4_CRYNB | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CYP6 PE=3 SV=1 | 7 | 71 | 8.0E-06 |
| sp|Q9FYB7|RSZ32_ARATH | Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1 | 4 | 104 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| Orthofinder run ID | 4 |
| Orthogroup | 6330 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4882 MSRGGTTLYVTGFSHGTRARDLAYEFERYGRLVRCDIPAPRSSSSRLFAFVEYEDRRDADDAYYEMHNKRIGRDD MLKIEWARTPPSASWRFESGRDRDRRGGPRSPRRGRSPSPRRSGRDHSPRKDDRRDRDRDYDRDGRRDRDRSRSP DPRDRDRDGKDDRDDRDRRENGANGDDRKGEALDSPPPVHDDLDVAE* |
| Coding | >OphauG2|4882 ATGTCTCGTGGCGGCACAACGCTTTACGTGACCGGCTTTAGCCACGGCACCCGCGCTCGAGATCTCGCCTACGAG TTCGAACGTTATGGGCGCCTTGTCCGTTGTGACATTCCGGCCCCGCGCTCCTCCTCGAGCCGACTCTTCGCCTTT GTCGAGTACGAGGATCGTCGCGATGCCGATGATGCCTACTACGAGATGCACAACAAGCGCATCGGTCGTGATGAC ATGCTGAAGATTGAGTGGGCGCGTACTCCTCCTTCGGCGTCGTGGCGCTTCGAGTCTGGCCGTGATCGTGACCGC CGTGGTGGGCCCCGCTCACCTCGCCGTGGCCGATCACCTTCGCCTCGTCGTAGTGGACGTGATCACTCGCCGCGT AAGGATGACCGACGGGATCGCGATCGCGACTATGACCGAGATGGCCGTCGTGATCGTGACCGTTCCCGCAGCCCT GACCCTCGTGATCGTGACCGAGACGGCAAGGATGACCGCGATGATCGAGACCGACGCGAGAATGGCGCCAACGGC GACGACCGCAAGGGTGAAGCTCTCGACAGCCCTCCCCCGGTTCACGACGATCTTGATGTCGCCGAATAG |
| Transcript | >OphauG2|4882 ATGTCTCGTGGCGGCACAACGCTTTACGTGACCGGCTTTAGCCACGGCACCCGCGCTCGAGATCTCGCCTACGAG TTCGAACGTTATGGGCGCCTTGTCCGTTGTGACATTCCGGCCCCGCGCTCCTCCTCGAGCCGACTCTTCGCCTTT GTCGAGTACGAGGATCGTCGCGATGCCGATGATGCCTACTACGAGATGCACAACAAGCGCATCGGTCGTGATGAC ATGCTGAAGATTGAGTGGGCGCGTACTCCTCCTTCGGCGTCGTGGCGCTTCGAGTCTGGCCGTGATCGTGACCGC CGTGGTGGGCCCCGCTCACCTCGCCGTGGCCGATCACCTTCGCCTCGTCGTAGTGGACGTGATCACTCGCCGCGT AAGGATGACCGACGGGATCGCGATCGCGACTATGACCGAGATGGCCGTCGTGATCGTGACCGTTCCCGCAGCCCT GACCCTCGTGATCGTGACCGAGACGGCAAGGATGACCGCGATGATCGAGACCGACGCGAGAATGGCGCCAACGGC GACGACCGCAAGGGTGAAGCTCTCGACAGCCCTCCCCCGGTTCACGACGATCTTGATGTCGCCGAATAG |
| Gene | >OphauG2|4882 ATGTCTCGTGGCGGCACAACGCTTTACGTGACCGGCTTTAGCCACGGCACCCGCGCTCGAGATCTCGCCTACGAG TTCGAACGGTATGTCAACTGCGCCTGCGCTGGCGTCTTTCGTTCAACGCCCTCGTCCTCGCCCTCGTCCACGTCG CCCTCCGTCCTCTTCGCCCCCGACGACGAGAAAGCCTGTCCCCGCATCTCGATGCTCAAGACTTGATGCCAGGTC TTGGGCACTCCAGCCTCGTCGTCGTCGTCGTCGCCCTCGTCGTCGCCCTCGCCCTCGTCCGCCCTCGTCATCCCT CTCGCTCTGAGCCTGCCTTTATCAATTCCTCCTCCCATGTCCTGTCTCGCCGATGGATGCGCTTGCTGGCCCTTT TCATGGTGGCGACTCTCAAGAGTCAGTCCTGAGCTTGCACAGTCTGTACTCGTGCGCCCAGCTTCATTATGGAGT CATGGCTCTCGCGCCCCTCCGCCTTGCGGCTCTTACTCTTGCCTATCCCGCATCTGCTGCTCTCTTCCAAGATGC CCGTGCCATCCACCTTTTCATCTCACCCTTCGCTCTTGATGCATGTGCCTTGAACAGGTCTTTCCAACGTACTAA TCACTCTTGACCTTGTAGTTATGGGCGCCTTGTCCGTTGTGACATTCCGGCCCCGCGCTCCTCCTCGAGCCGACT GTGAGTTTTTGTCTTGTTGTTGTGTCTTTTTCTCCACCAAAAGAGGTCAACTCTTGCTGACAGCCCTAACCCACC ATGCCGCGCAGCTTCGCCTTTGTCGAGTACGAGGATCGTCGCGATGCCGATGATGCCTACTACGAGATGCACAAC AAGCGCATCGGTCGTGATGACATGCTGAAGATTGAGGTTAGCAGACATGATTGCCACGTCACTTGCTCTTTTCTG TTTCTGACTTGGCCATGCGGCAGTGGGCGCGTACTCCTCCTTCGGCGTCGTGGCGCTTCGAGTCTGGCCGTGATC GTGACCGCCGTGGTGGGCCCCGCTCACCTCGCCGTGGCCGATCACCTTCGCCTCGTCGTAGTGGACGTGATCACT CGCCGCGTAAGGATGACCGACGGGATCGCGATCGCGACTATGACCGAGATGGCCGTCGTGATCGTGACCGTTCCC GCAGCCCTGACCCTCGGTTAGTTGGGCTACTTTGCGACTTTTGATTGGCAACACGGCATTGACAGGAGCTGTAGT GATCGTGACCGAGACGGCAAGGATGACCGCGATGATCGAGACCGACGCGAGAATGGCGCCAACGGCGACGACCGC AAGGGTAAGGCGGCGGTCATCATCACGGTTTAATGCTGTAGCTATCTAACATTGCTGGATTCTACAGGTGAAGCT CTCGACAGCCCTCCCCCGGTTCACGACGATCTTGATGTCGCCGAATAG |