Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|4856
Gene name
LocationContig_42:29364..31469
Strand-
Gene length (bp)2105
Transcript length (bp)1812
Coding sequence length (bp)1812
Protein length (aa) 604

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08646 Rep_fac-A_C Replication factor-A C terminal domain 1.5E-54 447 592
PF16900 REPA_OB_2 Replication protein A OB domain 3.4E-38 291 388
PF04057 Rep-A_N Replication factor-A protein 1, N-terminal domain 5.7E-20 8 107
PF01336 tRNA_anti-codon OB-fold nucleic acid binding domain 1.1E-08 182 267

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb1 PE=1 SV=1 4 596 0.0E+00
sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1 29 598 2.0E-134
sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2 7 598 5.0E-133
sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1 7 598 7.0E-131
sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1 7 596 4.0E-130
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Swissprot ID Swissprot Description Start End E-value
sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb1 PE=1 SV=1 4 596 0.0E+00
sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1 29 598 2.0E-134
sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2 7 598 5.0E-133
sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1 7 598 7.0E-131
sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1 7 596 4.0E-130
sp|Q5FW17|RFA1_XENTR Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1 3 598 1.0E-126
sp|Q8VEE4|RFA1_MOUSE Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=1 SV=1 7 598 2.0E-126
sp|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1 29 598 4.0E-125
sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1 29 598 2.0E-118
sp|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1 29 586 7.0E-113
sp|Q9SKI4|RFA1A_ARATH Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana GN=RPA1A PE=1 SV=1 29 596 3.0E-100
sp|Q6YZ49|RFA1A_ORYSJ Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica GN=RPA1A PE=1 SV=1 29 596 2.0E-97
sp|Q10Q08|RFA1B_ORYSJ Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica GN=RPA1B PE=1 SV=1 2 596 4.0E-89
sp|Q9FHJ6|RFA1C_ARATH Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana GN=RPA1C PE=3 SV=1 124 601 1.0E-87
sp|F4JSG3|RFA1E_ARATH Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana GN=RPA1E PE=2 SV=1 164 603 3.0E-85
sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 132 596 5.0E-84
sp|Q9SD82|RFA1B_ARATH Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana GN=RPA1B PE=3 SV=1 5 592 2.0E-83
sp|Q9FME0|RFA1D_ARATH Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana GN=RPA1D PE=2 SV=1 46 592 1.0E-71
sp|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit OS=Crithidia fasciculata GN=RPA1 PE=1 SV=1 160 570 1.0E-65
sp|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit OS=Caenorhabditis elegans GN=rpa-1 PE=1 SV=1 161 598 7.0E-53
sp|O97472|RFA1_CAEBR Probable replication factor A 73 kDa subunit OS=Caenorhabditis briggsae GN=rpa-1 PE=3 SV=1 169 598 1.0E-52
sp|F4JSG3|RFA1E_ARATH Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana GN=RPA1E PE=2 SV=1 28 120 2.0E-10
sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 7 133 2.0E-07
sp|O27438|RPA_METTH Replication factor A OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rpa PE=1 SV=2 184 572 2.0E-07
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GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0003677 DNA binding Yes
GO:0005634 nucleus Yes
GO:0006260 DNA replication Yes
GO:0043170 macromolecule metabolic process No
GO:0043226 organelle No
GO:1901363 heterocyclic compound binding No
GO:0044238 primary metabolic process No
GO:0043231 intracellular membrane-bounded organelle No
GO:0008150 biological_process No
GO:0006259 DNA metabolic process No
GO:0008152 metabolic process No
GO:0043227 membrane-bounded organelle No
GO:0043229 intracellular organelle No
GO:0009987 cellular process No
GO:0046483 heterocycle metabolic process No
GO:0005575 cellular_component No
GO:1901360 organic cyclic compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0005488 binding No
GO:0071704 organic substance metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0003674 molecular_function No
GO:0110165 cellular anatomical entity No
GO:0097159 organic cyclic compound binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0044237 cellular metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup821
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4856 (this protein)
Ophiocordyceps australis map64 (Brazil) OphauB2|5297
Ophiocordyceps camponoti-floridani Ophcf2|02064
Ophiocordyceps camponoti-floridani Ophcf2|07426
Ophiocordyceps camponoti-rufipedis Ophun1|1034
Ophiocordyceps kimflemingae Ophio5|1248
Ophiocordyceps subramaniannii Hirsu2|3927

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|4856
MDAASLISRGSLDVIFNDADKAAKLFPVPILQCLQIKQMAPSAQGGDRYRLVMSDGEHYVQTMLATQANHVVHED
KLLRGSLARIKQYTPNNLKGKNILIIIDLEALEGGVHDKIGDPSPLDARAPTETTIPSNDFYGAKKEESKSQVQM
QKPQQSMPSRPAMHAGSNIYPIEGLSPFAHKWTIKARVTVKSDIKTWHKATGEGKLFSVNLLDESSEIKATGFNE
QCDAFYDLFEQGCVYYISSPCRVQLAKKQFSNLANDYELTFERDTVIEKAEDQSNVPQVRFNFCTIQELQSVEKD
NTIDVIGVLKDVAEVTEITSKKDGRPFQKRELTLVDDTGYSVRVTVWGKTASSFAANPESVVAFKGVKVSDFGGK
SLSLLSSGTMTVDPDIADAHRLKGWYDSAGRTDTFATHQGLASMSGATGRRDEVKTIAQVKEDGLGVDDVAYYTL
KATIVFAKQDNFCYPACSSQACNKKVTAMGDGTWHCEKCNVSHDKPNYRYILSLNVADHTSHQWLSCFDETGALI
LGRTANELMELKENDETRFMAAFEDVNCKKLMFRCRAKMDNYGDAQRVRYQVMSAAFLDYKAEAHKLADMIRQYD
INS*
Coding >OphauG2|4856
ATGGACGCCGCCTCTCTTATTTCTCGGGGGTCTCTTGACGTCATCTTTAACGATGCCGACAAGGCTGCCAAGCTA
TTCCCCGTGCCCATTTTGCAATGCCTGCAGATCAAGCAGATGGCGCCGTCGGCCCAGGGCGGCGATAGATATCGG
CTCGTCATGAGCGATGGAGAACACTACGTGCAGACCATGCTGGCCACTCAAGCCAACCACGTGGTTCACGAAGAC
AAGCTCCTTCGCGGCTCTCTAGCTCGCATCAAGCAATACACGCCGAATAATCTCAAGGGGAAAAACATTCTCATT
ATTATTGACCTGGAAGCCTTGGAAGGCGGTGTGCACGACAAGATTGGCGACCCTAGCCCGCTCGACGCGAGGGCG
CCAACCGAGACGACGATTCCGAGCAACGACTTTTATGGGGCGAAAAAGGAGGAGAGCAAGTCGCAAGTTCAGATG
CAGAAGCCGCAGCAATCGATGCCCTCGCGGCCAGCCATGCACGCGGGCAGCAACATCTACCCCATCGAGGGCCTG
TCGCCGTTTGCACACAAGTGGACCATCAAAGCGCGAGTGACGGTCAAATCAGACATCAAGACGTGGCACAAGGCT
ACTGGCGAGGGCAAGCTGTTCAGCGTCAACCTGCTGGACGAGAGCAGCGAGATCAAGGCGACGGGGTTCAACGAG
CAATGCGATGCCTTTTACGACTTGTTTGAGCAAGGATGCGTCTACTACATCTCGAGTCCGTGCCGCGTGCAGCTG
GCCAAGAAGCAATTCTCCAACCTTGCCAATGACTACGAGCTTACGTTTGAGCGTGATACGGTGATTGAAAAGGCC
GAGGACCAGAGCAACGTGCCGCAAGTGCGCTTCAACTTTTGCACCATCCAGGAGCTGCAGAGCGTGGAAAAGGAC
AATACGATTGATGTGATTGGCGTGCTCAAGGACGTGGCCGAGGTGACGGAAATCACGTCCAAGAAGGACGGGCGG
CCCTTTCAGAAGCGGGAGCTGACGCTGGTGGACGACACGGGCTACTCGGTGCGCGTCACAGTCTGGGGCAAGACG
GCCAGCAGCTTCGCGGCCAACCCCGAGTCGGTGGTGGCCTTTAAAGGCGTCAAGGTGTCCGACTTTGGCGGCAAG
AGCCTGAGCCTGCTTTCGTCGGGCACCATGACGGTCGACCCCGACATTGCCGACGCGCACCGCCTCAAGGGCTGG
TACGACTCGGCCGGGCGCACCGACACGTTTGCCACGCACCAAGGCCTGGCCAGCATGAGCGGTGCCACGGGCCGC
CGAGACGAAGTCAAGACGATTGCCCAGGTCAAGGAGGACGGGCTGGGCGTCGACGACGTGGCCTACTACACCCTC
AAGGCCACCATTGTCTTTGCCAAGCAGGACAACTTTTGCTACCCGGCCTGCTCCTCCCAGGCCTGCAACAAAAAG
GTGACGGCCATGGGCGACGGCACCTGGCACTGCGAAAAGTGCAACGTGTCGCACGACAAGCCAAACTATCGCTAC
ATTCTCTCCCTCAACGTGGCCGACCACACCAGCCACCAGTGGCTCAGCTGCTTTGACGAGACGGGCGCTCTGATT
CTCGGCCGCACCGCCAATGAGCTTATGGAGCTCAAGGAAAACGACGAGACTCGCTTCATGGCTGCGTTTGAGGAC
GTCAACTGCAAGAAGCTCATGTTTCGCTGCCGCGCAAAGATGGACAACTATGGCGATGCTCAGAGGGTCCGATAT
CAAGTCATGAGCGCAGCCTTCCTCGACTACAAGGCCGAGGCCCACAAGTTGGCCGACATGATTCGACAGTACGAC
ATCAACTCGTAA
Transcript >OphauG2|4856
ATGGACGCCGCCTCTCTTATTTCTCGGGGGTCTCTTGACGTCATCTTTAACGATGCCGACAAGGCTGCCAAGCTA
TTCCCCGTGCCCATTTTGCAATGCCTGCAGATCAAGCAGATGGCGCCGTCGGCCCAGGGCGGCGATAGATATCGG
CTCGTCATGAGCGATGGAGAACACTACGTGCAGACCATGCTGGCCACTCAAGCCAACCACGTGGTTCACGAAGAC
AAGCTCCTTCGCGGCTCTCTAGCTCGCATCAAGCAATACACGCCGAATAATCTCAAGGGGAAAAACATTCTCATT
ATTATTGACCTGGAAGCCTTGGAAGGCGGTGTGCACGACAAGATTGGCGACCCTAGCCCGCTCGACGCGAGGGCG
CCAACCGAGACGACGATTCCGAGCAACGACTTTTATGGGGCGAAAAAGGAGGAGAGCAAGTCGCAAGTTCAGATG
CAGAAGCCGCAGCAATCGATGCCCTCGCGGCCAGCCATGCACGCGGGCAGCAACATCTACCCCATCGAGGGCCTG
TCGCCGTTTGCACACAAGTGGACCATCAAAGCGCGAGTGACGGTCAAATCAGACATCAAGACGTGGCACAAGGCT
ACTGGCGAGGGCAAGCTGTTCAGCGTCAACCTGCTGGACGAGAGCAGCGAGATCAAGGCGACGGGGTTCAACGAG
CAATGCGATGCCTTTTACGACTTGTTTGAGCAAGGATGCGTCTACTACATCTCGAGTCCGTGCCGCGTGCAGCTG
GCCAAGAAGCAATTCTCCAACCTTGCCAATGACTACGAGCTTACGTTTGAGCGTGATACGGTGATTGAAAAGGCC
GAGGACCAGAGCAACGTGCCGCAAGTGCGCTTCAACTTTTGCACCATCCAGGAGCTGCAGAGCGTGGAAAAGGAC
AATACGATTGATGTGATTGGCGTGCTCAAGGACGTGGCCGAGGTGACGGAAATCACGTCCAAGAAGGACGGGCGG
CCCTTTCAGAAGCGGGAGCTGACGCTGGTGGACGACACGGGCTACTCGGTGCGCGTCACAGTCTGGGGCAAGACG
GCCAGCAGCTTCGCGGCCAACCCCGAGTCGGTGGTGGCCTTTAAAGGCGTCAAGGTGTCCGACTTTGGCGGCAAG
AGCCTGAGCCTGCTTTCGTCGGGCACCATGACGGTCGACCCCGACATTGCCGACGCGCACCGCCTCAAGGGCTGG
TACGACTCGGCCGGGCGCACCGACACGTTTGCCACGCACCAAGGCCTGGCCAGCATGAGCGGTGCCACGGGCCGC
CGAGACGAAGTCAAGACGATTGCCCAGGTCAAGGAGGACGGGCTGGGCGTCGACGACGTGGCCTACTACACCCTC
AAGGCCACCATTGTCTTTGCCAAGCAGGACAACTTTTGCTACCCGGCCTGCTCCTCCCAGGCCTGCAACAAAAAG
GTGACGGCCATGGGCGACGGCACCTGGCACTGCGAAAAGTGCAACGTGTCGCACGACAAGCCAAACTATCGCTAC
ATTCTCTCCCTCAACGTGGCCGACCACACCAGCCACCAGTGGCTCAGCTGCTTTGACGAGACGGGCGCTCTGATT
CTCGGCCGCACCGCCAATGAGCTTATGGAGCTCAAGGAAAACGACGAGACTCGCTTCATGGCTGCGTTTGAGGAC
GTCAACTGCAAGAAGCTCATGTTTCGCTGCCGCGCAAAGATGGACAACTATGGCGATGCTCAGAGGGTCCGATAT
CAAGTCATGAGCGCAGCCTTCCTCGACTACAAGGCCGAGGCCCACAAGTTGGCCGACATGATTCGACAGTACGAC
ATCAACTCGTAA
Gene >OphauG2|4856
ATGGACGCCGCCTCTCTTATTTCTCGGGGGTCTCTTGAGTAAGTCTGCTCCTTGGTATACTATCGTCGTGTACTG
TCGTAATGTACCATGGACCAAGGCAGTTTTGCTGACTTGAAAACAGCGTCATCTTTAACGATGCCGACAAGGCTG
CCAAGCTATTCCCCGTGCCCATTTTGCAATGCCTGCAGATCAAGCAGATGGCGCCGTCGGCCCAGGGCGGCGATA
GATATCGGCTCGTCATGAGCGATGGAGAACACTACGTGCAGACCATGCTGGCCACTCAAGCCAACCACGTGGTTC
ACGAAGACAAGCTCCTTCGCGGCTCTCTAGCTCGCATCAAGCAATACACGCCGAATAATCTCAAGGGGAAAAAGT
GAGCTGGGCAAAGGCTGTGTGTCTGGAGGCAACTGTGGCTCAACTGACTGTTGGCAGCATTCTCATTATTATTGA
CCTGGAAGCCTTGGAAGGCGGTGTGCACGACAAGATTGGCGACCCTAGCCCGCTCGACGCGAGGGCGCCAACCGA
GACGACGATTCCGAGCAACGACTTTTATGGGGCGAAAAAGGAGGAGAGCAAGTCGCAAGTTCAGATGCAGAAGCC
GCAGCAATCGATGCCCTCGCGGCCAGCCATGCACGCGGGCAGCAACATCTACCCCATCGAGGGCCTGTCGCCGTT
TGCACACAAGTGGACCATCAAAGCGCGAGTGACGGTCAAATCAGACATCAAGACGTGGCACAAGGCTACTGGCGA
GGGCAAGCTGTTCAGCGTCAACCTGCTGGACGAGAGCAGCGAGATCAAGGCGACGGGGTTCAACGAGCAATGCGA
TGCCTTTTACGACTTGTTTGAGCAAGGATGCGTCTACTACATCTCGAGTCCGTGCCGCGTGCAGCTGGCCAAGAA
GCAATTCTCCAACCTTGCCAATGACTACGAGCTTACGTTTGAGCGTGATACGGTGATTGAAAAGGCCGAGGACCA
GAGCAACGTGCCGCAAGTGCGCTTCAACTTTTGCACCATCCAGGAGCTGCAGAGCGTGGAAAAGGACAATACGAT
TGATGTGATTGGCGTGCTCAAGGACGTGGCCGAGGTGACGGAAATCACGTCCAAGAAGGACGGGCGGCCCTTTCA
GAAGCGGGAGCTGACGCTGGTGGACGACACGGGCTACTCGGTGCGCGTCACAGTCTGGGGCAAGACGGCCAGCAG
CTTCGCGGCCAACCCCGAGTCGGTGGTGGCCTTTAAAGGCGTCAAGGTGTCCGACTTTGGCGGCAAGAGCCTGAG
CCTGCTTTCGTCGGGCACCATGACGGTCGACCCCGACATTGCCGACGCGCACCGCCTCAAGGGCTGGTACGACTC
GGCCGGGCGCACCGACACGTTTGCCACGCACCAAGGCCTGGCCAGCATGAGCGGTGCCACGGGCCGCCGAGACGA
AGTCAAGACGATTGCCCAGGTCAAGGAGGACGGGCTGGGCGTCGACGACGTGGCCTACTACACCCTCAAGGCCAC
CATTGTCTTTGCCAAGCAGGACAACTTTTGCTACCCGGCCTGCTCCTCCCAGGCCTGCAACAAAAAGGTGACGGC
CATGGGCGACGGCACCTGGCACTGCGAAAAGTGCAACGTGTCGCACGACAAGCCAAACTATCGCTACATTCTCTC
CCTCAACGTGGCCGACCACACCAGCCACCAGTGGCTCAGCTGCTTTGACGAGACGGGCGCTCTGATTCTCGGCCG
CACCGCCAATGAGCTTATGGAGCTCAAGGAAAACGACGAGACTCGCTTCATGGCTGCGTTTGAGGACGTCAACTG
CAAGAAGCTCATGTTTCGCTGCCGCGCAAAGATGGACAACTATGGCGATGCTCAGAGGTTAGTCCCCCCCTTTTT
TTCTCTGTTTTTCTTCTCTTTCCTTTTTTTTTTTCTTTTTTTTCTTTTTTCTTTTTTTCCTTCTTTTCTTCTTCC
TCCTTCTCTTCTTTTTGCCATGTGTCTCCTTGTCGCTTGGCTGACAATGTCTCAACAGGGTCCGATATCAAGTCA
TGAGCGCAGCCTTCCTCGACTACAAGGCCGAGGCCCACAAGTTGGCCGACATGATTCGACAGTACGACATCAACT
CGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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