© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauG2|4819 |
| Gene name | |
| Location | Contig_415:6185..8255 |
| Strand | - |
| Gene length (bp) | 2070 |
| Transcript length (bp) | 1752 |
| Coding sequence length (bp) | 1752 |
| Protein length (aa) | 584 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.6E-05 | 258 | 324 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.3E-12 | 377 | 448 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.0E-05 | 508 | 568 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36629|U2AF2_SCHPO | Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1 | 178 | 583 | 3.0E-71 |
| sp|Q24562|U2AF2_DROME | Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1 | 187 | 573 | 5.0E-68 |
| sp|P90978|U2AF2_CAEEL | Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=2 SV=2 | 164 | 573 | 9.0E-61 |
| sp|P90727|U2AF2_CAEBR | Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2 | 194 | 573 | 1.0E-60 |
| sp|P26369|U2AF2_MOUSE | Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3 | 186 | 572 | 1.0E-60 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36629|U2AF2_SCHPO | Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1 | 178 | 583 | 3.0E-71 |
| sp|Q24562|U2AF2_DROME | Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1 | 187 | 573 | 5.0E-68 |
| sp|P90978|U2AF2_CAEEL | Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=2 SV=2 | 164 | 573 | 9.0E-61 |
| sp|P90727|U2AF2_CAEBR | Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2 | 194 | 573 | 1.0E-60 |
| sp|P26369|U2AF2_MOUSE | Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3 | 186 | 572 | 1.0E-60 |
| sp|P26368|U2AF2_HUMAN | Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4 | 186 | 572 | 1.0E-60 |
| sp|Q9ZR40|U2A2B_NICPL | Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1 | 191 | 578 | 7.0E-41 |
| sp|O23212|U2A2A_ARATH | Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2 | 188 | 579 | 2.0E-40 |
| sp|Q8L716|U2A2B_ARATH | Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2 | 209 | 578 | 1.0E-38 |
| sp|Q2R0Q1|U2A2A_ORYSJ | Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2 | 184 | 578 | 6.0E-37 |
| sp|Q63285|UHMK1_RAT | Serine/threonine-protein kinase Kist OS=Rattus norvegicus GN=Uhmk1 PE=1 SV=1 | 485 | 579 | 1.0E-10 |
| sp|P97343|UHMK1_MOUSE | Serine/threonine-protein kinase Kist OS=Mus musculus GN=Uhmk1 PE=1 SV=3 | 485 | 579 | 1.0E-10 |
| sp|O13845|RSD1_SCHPO | RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rsd1 PE=1 SV=2 | 482 | 578 | 1.0E-08 |
| sp|P42698|DR111_ARATH | DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=1 SV=2 | 479 | 581 | 4.0E-08 |
| sp|Q28GD4|ELAV2_XENTR | ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2 | 365 | 452 | 7.0E-07 |
| sp|Q06106|MRD1_YEAST | Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1 SV=1 | 231 | 572 | 2.0E-06 |
| sp|Q60899|ELAV2_MOUSE | ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1 | 367 | 452 | 2.0E-06 |
| sp|Q5R9Z6|ELAV2_PONAB | ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1 | 367 | 452 | 2.0E-06 |
| sp|Q12926|ELAV2_HUMAN | ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2 | 367 | 452 | 2.0E-06 |
| sp|Q28IQ9|CIRBP_XENTR | Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1 | 376 | 452 | 3.0E-06 |
| sp|F1QBY1|NIPLB_DANRE | Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1 | 4 | 139 | 5.0E-06 |
| sp|Q91584|ELAV3_XENLA | ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1 | 372 | 452 | 6.0E-06 |
| sp|Q9UHX1|PUF60_HUMAN | Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1 | 481 | 579 | 7.0E-06 |
| sp|Q5R469|PUF60_PONAB | Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1 | 481 | 579 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4819 MNGDSYSARGADGRRGREYPPNRGDRDERRDRFRDRDRERDRERERDRDRDRDRDRDRDRDRQRDRRRSRSPDHR VHRRGGDGDADAYSSSRTHRDREREDRYAGRDRRGEREWDRDRGSSRRDARRDDEERPPRRDRELYDERRRAPRE RRDDVAFARQEQPRRSPTPVKREPTPDLTDTVPILERKRRLTQWDIKPPGYELVTAEQAKLSGMFPLPGAPRQQA VDPTRLQAFMNQPGAQVTSAGLKASNSRQSKRLIVSNLPPGTTEESLVAFFNLQLNDLNVIESTDPCAYCQFSPD DTFAVLEFKNAADATMALALDGISMTADDVANGSDMPDASRLVIRRPKDYVMPAVPDDMMYDMDVVSSNVPDTVH KLCISNLPTYLTEEQVMELLAAFGKPKAFVLVKDRNADESRGIAFVEYFEPTAANDPALNTLNGMDVKGNKLKAN KASFGFTQVANFDVGITAISGLASQTSGNTEKGRVLQLLNMVKPEELMDNDEYQEICDDVREECVKFGTLLDLKV PRPSGGSRQSAGVGKIFVKFESSDSAQNALTALAGRKFADRTVVATYFPEENFEVNAW* |
| Coding | >OphauG2|4819 ATGAACGGCGACAGCTACTCAGCTCGAGGTGCAGATGGGCGGCGGGGTCGAGAGTATCCCCCTAATCGAGGGGAT CGTGACGAGCGTCGAGACCGTTTCCGAGATAGGGACCGAGAGCGTGATCGTGAGCGTGAGCGCGACCGCGACCGC GACCGCGACCGTGATCGTGACCGTGATCGCGACCGTCAGCGTGACCGCAGACGCTCCAGATCCCCTGATCATCGT GTCCATCGTCGCGGCGGAGATGGCGATGCCGATGCCTACTCGTCGAGCCGAACTCACCGTGACAGAGAGCGCGAG GACCGCTACGCCGGCCGTGATCGCCGAGGAGAGCGTGAGTGGGATCGCGATCGAGGCTCTTCTCGCAGAGACGCT AGGCGCGATGACGAGGAAAGGCCTCCCCGACGCGACAGGGAATTGTACGATGAACGTCGCCGTGCCCCCAGAGAG CGCCGAGACGACGTGGCCTTTGCGAGACAGGAACAGCCTCGCAGGAGTCCGACTCCTGTTAAGCGCGAGCCGACT CCTGATCTTACCGACACTGTTCCCATATTGGAGCGTAAAAGACGACTGACCCAATGGGACATCAAACCACCGGGC TATGAACTAGTCACGGCTGAACAGGCAAAACTTTCTGGAATGTTTCCATTGCCTGGGGCTCCTCGCCAACAAGCT GTTGACCCGACTCGACTTCAGGCCTTTATGAATCAGCCTGGAGCACAAGTGACTAGTGCAGGCCTCAAGGCAAGC AACTCGCGACAATCGAAGCGTCTCATCGTCTCAAACTTGCCTCCCGGTACAACGGAAGAGAGCCTTGTCGCCTTC TTCAATCTACAGCTCAATGACCTCAATGTCATCGAGTCCACCGACCCTTGTGCTTATTGCCAATTTTCTCCAGAC GATACTTTTGCCGTCTTGGAATTCAAGAACGCTGCAGACGCTACCATGGCTCTCGCTCTTGACGGAATCTCAATG ACTGCAGACGACGTTGCAAATGGCTCCGACATGCCAGATGCATCCCGTCTCGTCATCCGGCGACCAAAGGACTAC GTCATGCCCGCTGTCCCTGATGATATGATGTACGACATGGACGTTGTCTCCAGCAACGTTCCCGATACCGTGCAT AAACTTTGCATCAGCAACCTTCCCACATACCTCACAGAGGAGCAGGTCATGGAACTACTTGCTGCATTTGGCAAA CCCAAGGCTTTTGTCCTGGTCAAAGATCGCAATGCCGATGAATCGCGAGGTATTGCTTTTGTCGAATACTTTGAA CCGACTGCAGCAAATGACCCTGCCCTGAACACCTTGAACGGCATGGATGTCAAGGGCAACAAGCTCAAGGCAAAT AAAGCCAGCTTTGGCTTCACGCAGGTTGCCAACTTTGATGTGGGCATCACAGCCATTAGCGGCCTTGCTTCACAA ACCTCTGGCAACACGGAAAAGGGGCGTGTGCTACAGCTGCTCAACATGGTCAAACCAGAAGAGCTCATGGACAAC GACGAATACCAAGAAATTTGTGATGATGTTCGCGAAGAGTGTGTCAAGTTTGGCACCTTGTTGGATCTAAAAGTC CCCAGGCCCTCGGGAGGCAGTCGCCAGTCTGCTGGCGTGGGCAAGATTTTTGTCAAATTCGAATCAAGCGACTCG GCCCAGAATGCGCTTACGGCACTAGCTGGCCGCAAGTTTGCCGATCGAACTGTTGTTGCAACTTACTTCCCCGAG GAAAACTTTGAAGTCAACGCATGGTGA |
| Transcript | >OphauG2|4819 ATGAACGGCGACAGCTACTCAGCTCGAGGTGCAGATGGGCGGCGGGGTCGAGAGTATCCCCCTAATCGAGGGGAT CGTGACGAGCGTCGAGACCGTTTCCGAGATAGGGACCGAGAGCGTGATCGTGAGCGTGAGCGCGACCGCGACCGC GACCGCGACCGTGATCGTGACCGTGATCGCGACCGTCAGCGTGACCGCAGACGCTCCAGATCCCCTGATCATCGT GTCCATCGTCGCGGCGGAGATGGCGATGCCGATGCCTACTCGTCGAGCCGAACTCACCGTGACAGAGAGCGCGAG GACCGCTACGCCGGCCGTGATCGCCGAGGAGAGCGTGAGTGGGATCGCGATCGAGGCTCTTCTCGCAGAGACGCT AGGCGCGATGACGAGGAAAGGCCTCCCCGACGCGACAGGGAATTGTACGATGAACGTCGCCGTGCCCCCAGAGAG CGCCGAGACGACGTGGCCTTTGCGAGACAGGAACAGCCTCGCAGGAGTCCGACTCCTGTTAAGCGCGAGCCGACT CCTGATCTTACCGACACTGTTCCCATATTGGAGCGTAAAAGACGACTGACCCAATGGGACATCAAACCACCGGGC TATGAACTAGTCACGGCTGAACAGGCAAAACTTTCTGGAATGTTTCCATTGCCTGGGGCTCCTCGCCAACAAGCT GTTGACCCGACTCGACTTCAGGCCTTTATGAATCAGCCTGGAGCACAAGTGACTAGTGCAGGCCTCAAGGCAAGC AACTCGCGACAATCGAAGCGTCTCATCGTCTCAAACTTGCCTCCCGGTACAACGGAAGAGAGCCTTGTCGCCTTC TTCAATCTACAGCTCAATGACCTCAATGTCATCGAGTCCACCGACCCTTGTGCTTATTGCCAATTTTCTCCAGAC GATACTTTTGCCGTCTTGGAATTCAAGAACGCTGCAGACGCTACCATGGCTCTCGCTCTTGACGGAATCTCAATG ACTGCAGACGACGTTGCAAATGGCTCCGACATGCCAGATGCATCCCGTCTCGTCATCCGGCGACCAAAGGACTAC GTCATGCCCGCTGTCCCTGATGATATGATGTACGACATGGACGTTGTCTCCAGCAACGTTCCCGATACCGTGCAT AAACTTTGCATCAGCAACCTTCCCACATACCTCACAGAGGAGCAGGTCATGGAACTACTTGCTGCATTTGGCAAA CCCAAGGCTTTTGTCCTGGTCAAAGATCGCAATGCCGATGAATCGCGAGGTATTGCTTTTGTCGAATACTTTGAA CCGACTGCAGCAAATGACCCTGCCCTGAACACCTTGAACGGCATGGATGTCAAGGGCAACAAGCTCAAGGCAAAT AAAGCCAGCTTTGGCTTCACGCAGGTTGCCAACTTTGATGTGGGCATCACAGCCATTAGCGGCCTTGCTTCACAA ACCTCTGGCAACACGGAAAAGGGGCGTGTGCTACAGCTGCTCAACATGGTCAAACCAGAAGAGCTCATGGACAAC GACGAATACCAAGAAATTTGTGATGATGTTCGCGAAGAGTGTGTCAAGTTTGGCACCTTGTTGGATCTAAAAGTC CCCAGGCCCTCGGGAGGCAGTCGCCAGTCTGCTGGCGTGGGCAAGATTTTTGTCAAATTCGAATCAAGCGACTCG GCCCAGAATGCGCTTACGGCACTAGCTGGCCGCAAGTTTGCCGATCGAACTGTTGTTGCAACTTACTTCCCCGAG GAAAACTTTGAAGTCAACGCATGGTGA |
| Gene | >OphauG2|4819 ATGAACGGCGACAGCTACTCAGCTCGAGGTTCGCTAATCATGCCACCATGATGGCCAGGGTAGTCGCTGACTTGG ACGCTCCATCATTTCAAGCAGGTGCAGATGGGCGGCGGGGTCGAGAGTATCCCGTGAGCATACCATGGCGCGTTC TGCTTGGCTCAAGGCTTCTAACCAGACCATACATTACAGCCTAATCGAGGGGATCGTGACGAGCGTCGAGACCGT TTCCGAGATAGGGACCGAGAGCGTGATCGTGAGCGTGAGCGCGACCGCGACCGCGACCGCGACCGTGATCGTGAC CGTGATCGCGACCGTCAGCGTGACCGCAGACGCTCCAGATCCCCTGATCATCGTGTCCATCGTCGCGGCGGAGAT GGCGATGCCGATGCCTACTCGTCGAGCCGAACTCACCGTGACAGAGAGCGCGAGGACCGCTACGCCGGCCGTGAT CGCCGAGGAGAGCGTGAGTGGGATCGCGATCGAGGCTCTTCTCGCAGAGACGCTAGGCGCGATGACGAGGAAAGG CCTCCCCGACGCGACAGGGAATTGTACGATGAACGTCGCCGTGCCCCCAGAGAGCGCCGAGACGACGTGGCCTTT GCGAGACAGGAACAGCCTCGCAGGAGTCCGACTCCTGTTAAGCGCGAGCCGACTCCTGATCTTACCGACACTGTT CCCATATTGGAGCGTAAAAGACGACTGACCCAATGGGACATCAAACCACCGGGCTATGAACTAGTCACGGCTGAA CAGGCAAAACTTTCTGGAATGTTTCCATTGCCTGGGGCTCCTCGCCAACAAGCTGTTGACCCGACTCGACTTCAG GCCTTTATGAATCAGCCTGGAGCACAAGTGACTAGTGCAGGCCTCAAGGCAAGCAACTCGCGACAATCGAAGCGT CTCATCGTCTCAAACTTGCCTCCCGGTACAACGGAAGAGAGCCTTGTCGCCTTCTTCAATCTACAGCTCAATGAC CTCAATGTCATCGAGTCCACCGACCCTTGTGCTTATTGCCAATTTTCTCCAGACGATACTTTTGCCGTCTTGGAA TTCAAGAACGCTGCAGACGCTACCATGGCTCTCGCTCTTGACGGAATCTCAATGACTGCAGACGACGTTGCAAAT GGCTCCGACATGCCAGATGCATCCCGTCTCGTCATCCGGCGACCAAAGGACTACGTCATGCCCGCTGTCCCTGAT GATATGATGTACGACATGGACGTTGTCTCCAGCAACGTTCCCGATACCGTGCATAAACTTTGCATCAGCAACCTT CCCACATACCTCACAGAGGAGCAGGTCATGGAACTACTTGCTGCATTTGGCAAACCCAAGGCTTTTGTCCTGGTC AAAGATCGCAATGCCGATGAATCGCGAGTAAGGAGACTGGTCCTTGTCATGCTGTGTTTTGAGCCATGCATGATT AGATTTACTAACTTGTCAAGGGTATTGCTTTTGTCGAATACTTTGAACCGACTGCAGCAAATGACCCTGCCCTGA ACACCTTGAACGGCATGGATGTCAAGGGCAACAAGCTCAAGGCAAATAAAGCCAGCTTTGGCTTCACGCAGGTTG CCAACTTTGATGTGGGCATCACAGCCATTAGCGGCCTTGCTTCACAAACCTCTGGCAACACGGAAAAGGGGCGTG TGCTACAGCTGCTCAACATGGTCAAACCAGAAGAGCTCATGGACAACGACGAATACCAAGGTAGGTCACGCAAAA GCGTGAGCACTCACCCAGGTTAGTCCACACTTGTGCTGACAAGCCAATAGAAATTTGTGATGATGTTCGCGAAGA GTGTGTCAAGTTTGGCACCTTGTTGGATCTAAAAGTCCCCAGGCCCTCGGGAGGCAGTCGCCAGTCTGCTGGCGT GGGCAAGATTTTTGTCAAATTCGAATCAAGCGACTCGGCCCAGAATGCGCTTACGGCACTAGCTGGCCGCAAGTT TGCCGATCGAACTGTTGTTGCAACTTACTTCCCCGAGGTCAGATTGGTTACCATGCTTGTGAGACGTTTGTGCAC ATGCTAACACTGGCGCAGGAAAACTTTGAAGTCAACGCATGGTGA |